Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13865 cluster # 13865       Sequences # 14       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13865#0 length = 601 sequences # 8  
consensus_13865#1 length = 565 sequences # 5  
consensus_13865#2 length = 119 sequences # 1  

consensusID : consensus_13865#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 601
fasta sequence
                              [TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTC-AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC--ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA-CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTCT]

[+] EMBL CA762718             [TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC  ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTCT]
[+] EMBL CF312193             [       TTTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ]
[-] EMBL CF312192             [        TTTTTTTAGGCAGGCAAAACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL BE229909             [                   AGGCAAAACACCGTCAAGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC  ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT                                                             ]
[-] EMBL AK059562             [                         AACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC  ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGAT                                            ]
[-] EMBL CA766945             [                         AACACCGTC AGATATATATCTCTCTGATGATATTAGTACAAACAAGAAGTG AAATCCCTCTTTGTTCTAATAATCACACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC  ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGCGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAAT                                               ]
[-] EMBL CF301833             [                                                    ATGATATTAGTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCCNAC CCAATCATCCGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTG GGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTT                                                                                         ]
[-] EMBL BE229957             [                                                                              AAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCC  ACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAA CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT                                                             ]


>consensus_13865#0 TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTCAGATATATATCTCTCTGATGATATTA GTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATA GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTC T



consensusID : consensus_13865#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 565
fasta sequence
                              [CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTGGCCACACTGGAGAC]

[-] EMBL CB685346             [CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCGGCGCT                      ]
[-] EMBL BE229906             [              gATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT                                                                                                                               ]
[+] EMBL CB685347             [                                            ACTAGCATTTAAAGAGGGAGATCCAGTCCCTTGCCGACTTCCACACCAATCATCTGAAAAATGCCCTTGTTCAGCACCACCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGTAGTTCCATATCTCTGCATTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCTTTGCATCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCCCCATTGGTTCTGGCCTTGGTCTTGCTGGGCCCTGCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGATATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTG              ]
[-] EMBL CB001036             [                                                                                            ATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCGTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTAGGCACCTCAACCCCTGCAGGCAGCTATGCAGCTGTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCGTCAGAGGCTCGTGGCTCAAGATCGACAGATGTTCCAAGAAGGAGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTGTGACATCGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTTTCTCTAGGGCCAATGATAGTCAGCTTCCTCTATCATATATTGTTAGCAAGACGAGATGGGCAATCGTGCGTAGGTAGTCCAGTCGTAGGAGAGGCCACCATCGTTCAGACGTGGCCACACTGGAGAC]
[-] EMBL BE230005             [                                                                                                                                                                                                                                                   CCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAACTGTCGCCGCCATTGGTTATGGCCTTGTTCTTGCTGTGTCCTGCTAGCCTAGCAAGGTTT                                                                                                                               ]


>consensus_13865#1 CACTGCATAAATCTCATAGTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAG GGAGATCAAGTCCCTTGCCGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCA CCAGCTCCACGATGAAGGTGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCT CTGCAGTCCTGGTGAAACCCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCT CAACCCCTGCAGGCAGCTTTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCA GGGATAGACCAAGCTTCCTCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGG AGGGGGCAGCAAGTGTAGCTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCT GCTAGCCTAGCAAGGTTTTCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTC TTTGCAAGACGAGATGGGCAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATC GCTCATACGTGGCCACACTGGAGAC



consensusID : consensus_13865#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 119
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT]

[+] EMBL CF301834             [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT]


>consensus_13865#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTA GTCCCAACAAGAAGGGAAAATCCCTCTTTGGTCTAATAATTTCACTGCATAAATCTCAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13865#0      TTTTTTTTTTTTTTTAGGCAGGCAAAACACCGTCAGATATATATCTCTCTGATGATATTA 60
consensus_13865#1      ------------------------------------------------------------
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      GTACAAACAAGAAGTGAAAATCCCTCTTTGTTCTAATAATTTCACTGCATAAATCTCATA 120
consensus_13865#1      ------------------------------------------CACTGCATAAATCTCATA 18
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC 180
consensus_13865#1      GTATATATGGTACAAAATATATATGGACTAGCATTTAAAGAGGGAGATCAAGTCCCTTGC 78
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG 240
consensus_13865#1      CGACTTCCACACCAATCATCTGAAGAATGCCCTTGTTCAGCACCAGCTCCACGATGAAGG 138
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC 300
consensus_13865#1      TGCCAATGAGGCCAATCATGCAGGCCCTGGAGTTCCATATCTCTGCAGTCCTGGTGAAAC 198
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT 360
consensus_13865#1      CCAGGAAGGGCTCACTCAGCTTTGGCTGCTTCCTCGGCACCTCAACCCCTGCAGGCAGCT 258
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC 420
consensus_13865#1      TTGCAGCTCTAATTTTGACAGATCTGGTTCTTGGCAGTTCCAGGGATAGACCAAGCTTCC 318
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG 480
consensus_13865#1      TCAGAGGCTTGTGGCTCAAGATCGACTGATGTGCCAAGAAGGAGGGGGCAGCAAGTGTAG 378
consensus_13865#2      ------------------------------------------------------------
                                                                                   

consensus_13865#0      CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT 540
consensus_13865#1      CTGTCGCCGCCATTGGTTCTGGCCTTGTTCTTGCTGTGCCCTGCTAGCCTAGCAAGGTTT 438
consensus_13865#2      ---------------------------------------TTTTTTTTTTTTTTTTTTTTT 21
                                                                *  *    *       ***

consensus_13865#0      TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCCCCCCTTGTCTCGTCCTC 600
consensus_13865#1      TCTCTTGGGCCAATGATTTTCAGCTTCCTCTCTCCTATCTTCTTTGCAAGACGAGATGGG 498
consensus_13865#2      TTTTTTTTTTTTTTGATATATATCTCTCTGATGATATTAGTCCCAACAAGAAGGGAAAAT 81
                       * * **       **** *  * **  **        *  **    *  *    *     

consensus_13865#0      T----------------------------------------------------------- 601
consensus_13865#1      CAATCGTGCGTTGGTAGTCCAGTCGTTGGAGAGGCCACCATCGCTCATACGTGGCCACAC 558
consensus_13865#2      CCCTCTTTGGTC--TAATAATTTCACTGCATAAATC-TCAT------------------- 119
                                                                                   

consensus_13865#0      -------
consensus_13865#1      TGGAGAC 565
consensus_13865#2      -------
                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)