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Oryza sativa
cluster # 13870 cluster # 13870       Sequences # 14       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13870#0 length = 1697 sequences # 10  
consensus_13870#1 length = 399 sequences # 2  
consensus_13870#2 length = 271 sequences # 1  
consensus_13870#3 length = 248 sequences # 1  

consensusID : consensus_13870#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1697
fasta sequence
                              [CGCCGCTCCATCTCCAAGCCCGAATCCCCAAAACCCTAGCCCACCCCCTGCCGCCATGGCCGCCTCCCCCACCGGCTCCTCCTCCTCGGCCCCCGCCGCCGCGGCGGCGGCGGCGGCCGAGGCCACCGACGGGCCGACCCTCAGCGTCGTCTCGAAGCGGCTCCGCGCGCTGCGGAAGAAGCACAACCGGATCCTCCAGATGGAGGAGTCGCTCGCCGGCGGGAGGAAGCTCAACAGGGAGCAGGAGGGGGTGCTCCGATCCAAGCCCGCCGTCGTCGCGCTCATCGACGAGCTCGAGCGGATGCGCGCCCCTCTCGCCGCCGCCCTCGCCGAGGAGCTCTCCTCCCGCCCCGCCCCCTCCTCCTCCGCCGCGCCGCCGCCCCCCGCATCCTCCTCCGCCGCAGGCGCCGCGGATTCGTCCGTCGTCGAGGATCTCCTCGCGCTCATCTACTTCGGCACCCTCTTCGACCTCAAGCCGCAGACCGAGTTCGTCGCCACCATGGTCGCGCGCGCGCAGGAGCGGGACTGCTGCATCACCTACGACTACGTCACGGAGGACGCCGCCGACCTGCTGCACCAGTCCGATCTCGACAAGGTGTCTGCTCTGGCCGCCCTCGCCGCCTCGCGCCCTGCCGCGGCGGTGGGCGTCTCGCACCGCGACGCGCTCCAGTCCTGCGCGCAGCACGCCCGCCTCTGGCTTCGCCGTGCCGATGAGCCAATCCACCCCGAATCCAGCATCACTTATGCAGCGGTTAGGGCGAAGTTGGACAAGATCATGGCTTCAGACTACTACACAGCGCAACCGGAGATGCCGGAGATGGGGGCTGCGGTCGATTTGTCGGCTGCTGTGCAGGAGAGCATGGTTGTGTCACCAGAGGCGCCGGCTGTGGAAGAGAGCCAGGCTGAGGGACACAAGGATGAGAAGGAGGCTTCGGAGGCTACAGAAATCTACAACGATAATCAGCCTAATGTAGCTGATGCTCAGAATGTGGAGGATGAAGCCCCGGTGAATCCTTCTGAAGAGTTCTCAGCAGCAGAGGTGGAGCAGGAGAAGTTTGAAGCAGATGTGGAGGAACAAGAGAGGAATGCAGATCAACAGTTCACTTCTCGACGGCCTTACCAGAACCAGCGCGGTGGTGGTGGTCGTGGTGGTGGCAGGAGGGGTTACCAGAATGGAGGTCGTGGTGGACGTGGGGGGCGAGGAATGGGCGGTGGCGGGTACCAGAATGGTCGTGGTGGTGGCGGCG-GCGGTGGCTACCAGAATGGCCGTGGTGGGGGTGAGGGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTC--AGAGTTCTTTTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC-TTTGGGGAAGTAGTTTAAGGTCATATTCGTAAGCGGCCGCGAATTCGCGGCCGCTAGCGG]

[+] EMBL AK103539             [CGCCGCTCCATCTCCAAGCCCGAATCCCCAAAACCCTAGCCCACCCCCTGCCGCCATGGCCGCCTCCCCCACCGGCTCCTCCTCCTCGGCCCCCGCCGCCGCGGCGGCGGCGGCGGCCGAGGCCACCGACGGGCCGACCCTCAGCGTCGTCTCGAAGCGGCTCCGCGCGCTGCGGAAGAAGCACAACCGGATCCTCCAGATGGAGGAGTCGCTCGCCGGCGGGAGGAAGCTCAACAGGGAGCAGGAGGGGGTGCTCCGATCCAAGCCCGCCGTCGTCGCGCTCATCGACGAGCTCGAGCGGATGCGCGCCCCTCTCGCCGCCGCCCTCGCCGAGGAGCTCTCCTCCCGCCCCGCCCCCTCCTCCTCCGCCGCGCCGCCGCCCCCCGCATCCTCCTCCGCCGCAGGCGCCGCGGATTCGTCCGTCGTCGAGGATCTCCTCGCGCTCATCTACTTCGGCACCCTCTTCGACCTCAAGCCGCAGACCGAGTTCGTCGCCACCATGGTCGCGCGCGCGCAGGAGCGGGACTGCTGCATCACCTACGACTACGTCACGGAGGACGCCGCCGACCTGCTGCACCAGTCCGATCTCGACAAGGTGTCTGCTCTGGCCGCCCTCGCCGCCTCGCGCCCTGCCGCGGCGGTGGGCGTCTCGCACCGCGACGCGCTCCAGTCCTGCGCGCAGCACGCCCGCCTCTGGCTTCGCCGTGCCGATGAGCCAATCCACCCCGAATCCAGCATCACTTATGCAGCGGTTAGGGCGAAGTTGGACAAGATCATGGCTTCAGACTACTACACAGCGCAACCGGAGATGCCGGAGATGGGGGCTGCGGTCGATTTGTCGGCTGCTGTGCAGGAGAGCATGGTTGTGTCACCAGAGGCGCCGGCTGTGGAAGAGAGCCAGGCTGAGGGACACAAGGATGAGAAGGAGGCTTCGGAGGCTACAGAAATCTACAACGATAATCAGCCTAATGTAGCTGATGCTCAGAATGTGGAGGATGAAGCCCCGGTGAATCCTTCTGAAGAGTTCTCAGCAGCAGAGGTGGAGCAGGAGAAGTTTGAAGCAGATGTGGAGGAACAAGAGAGGAATGCAGATCAACAGTTCACTTCTCGACGGCCTTACCAGAACCAGCGCGGTGGTGGTGGTCGTGGTGGTGGCAGGAGGGGTTACCAGAATGGAGGTCGTGGTGGACGTGGGGGGCGAGGAATGGGCGGTGGCGGGTACCAGAATGGTCGTAGTGGTGGCGGCG GCGGTGGCTACCAGAATGGCCGTGGTGGGGGTGAGGGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTC  AGAGTTCTTTTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TTTGGGGAAGTA                                                ]
[+] EMBL CB646871             [         ATCTCCAAGCCCGAATCCCCAAAACCCTAGCCCACCCCCTGCCGCCATGGCCGCCTCCCCCACCGGCTCCTCCTCCTCGGCCCCCGCCGCCGCGGCGGCGGCGGCGGCCGAGGCCACCGACGGGCCGACCCTCAGCGTCGTCTCGAAGCGGCTCCGCGCGCTGCGGAAGAAGCACAACCGGATCCTCCAGATGGAGGAGTCGCTCGCCGGCGGGAGGAAGCTCAACAAGGAGCAGGAGGGGGTGCTCCGATCCAAGCCCGCCGTCGTCGCGCTCATCGACGAGCTCGAGCGGATGCGCGCCCCTCTCGCCGCCGCCCTCGCCGAGGAGCTCTCCTCCCGCCCCGCCCCCTCCTCCTCCGCCGCGCCGCCGCCCCCCGCATCCTCCTCCGCCGCAGGCGCCGCGGATTCGTCCGTCGTCGAGGATCTCCTCGCGCTCATCTACTTCGGCACCCTCTTCGACCTCAAGCCGCAGACCGAGTTCGTCGCCACCATGGTCGCGCGCGCGCAGGAGCGGGACTGCTGCATCACCTACGACTACGTCACGGAGGACGCCGCCGACCTGCTGCACCAGTCCGATCTCGACAAGGTGTCTGCTCTGGCCGCCCTCGCCGCCTCGCGCCCTGCCGCGGCGGTGGGCGTCTCGCACCGCGACGCGCTCCAGTCCTGCGCGCAGCACGCCCGCCTCTGGCTTCGCCGTGCCGATGAGCCAATCCACCCCGAATCCAGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB646872             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AACGATAATCAGCCTAATGTAGCTGATGCTCAGAATGTGGAGGATGAAGCCCCGGTGAATCCTTCTGAAGAGTTCTCAGCAGCAGAGGTGGAGCAGGAGAAGTTTGAAGCAGATGTGGAGGAACAAGAGAGGAATGCAGATCAACAGTTCACTTCTCGACGGCCTTACCAGAACCAGCGCGGTGGTGGTGGTCGTGGTGGTGGCAGGAGGGGTTACCAGAATGGAGGTCGTGGTGGACGTGGGGGGCGAGGAATGGGCGGTGGCGGGTACCAGAATGGTCGTGGTGGTGGCGGCG GCGGTGGCTACCAGAATGGCCGTGGTGGGGGTGAGGGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTC  AGAGTTCTTTTGTCACTCCAATGACTTTCATA                                                                                         ]
[+] EMBL BI808094             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGTGGTGGT GC GC  GCGGT GCTACCAGAAT GCCGTGGT GGGGTGA GGT GTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCT GTGGTGGCAACTCTTATTAC ACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGC AACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCC ATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TTTGGGGAAGTAGTTTAAGGTCAaaaaaaaa                             ]
[+] EMBL BM418989             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           tGCGCGCGGTGGCTACCAGAAT GCCGT GT GGGGTGA GGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCACGGGTTGTCGCTCTGGTGGT GCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACANTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCC ATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TTTGGGGAAGTAaaaa                                            ]
[-] EMBL CB967243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TTTGGGGAAGTAGTTTAAGGTCATATTC                                ]
[-] EMBL CB964861             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   GGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCAGCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TTTGGGGAAGTAGTTTAAGGTCATATTC                                ]
[+] EMBL AU225528             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     gccgctAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTC  AGAGTTCTTTTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATACGTTTGGGGAAGTAGTTTAAGGTCATATTCGTTAGCGGCCGCGAATTCGCGGCCGCTAGCGG]
[+] EMBL BE230457             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATATGNGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTC  AGAGTTCTTTTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TT                                                          ]
[-] EMBL BU672785             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     TTGTCACTCCAATGACTTTCATATGGATGGTTGGTTGATAATGCGGAATAC TTTGGGGAAGTAGTTTAAGGTCATATTCGT                              ]


>consensus_13870#0 CGCCGCTCCATCTCCAAGCCCGAATCCCCAAAACCCTAGCCCACCCCCTGCCGCCATGGC CGCCTCCCCCACCGGCTCCTCCTCCTCGGCCCCCGCCGCCGCGGCGGCGGCGGCGGCCGA GGCCACCGACGGGCCGACCCTCAGCGTCGTCTCGAAGCGGCTCCGCGCGCTGCGGAAGAA GCACAACCGGATCCTCCAGATGGAGGAGTCGCTCGCCGGCGGGAGGAAGCTCAACAGGGA GCAGGAGGGGGTGCTCCGATCCAAGCCCGCCGTCGTCGCGCTCATCGACGAGCTCGAGCG GATGCGCGCCCCTCTCGCCGCCGCCCTCGCCGAGGAGCTCTCCTCCCGCCCCGCCCCCTC CTCCTCCGCCGCGCCGCCGCCCCCCGCATCCTCCTCCGCCGCAGGCGCCGCGGATTCGTC CGTCGTCGAGGATCTCCTCGCGCTCATCTACTTCGGCACCCTCTTCGACCTCAAGCCGCA GACCGAGTTCGTCGCCACCATGGTCGCGCGCGCGCAGGAGCGGGACTGCTGCATCACCTA CGACTACGTCACGGAGGACGCCGCCGACCTGCTGCACCAGTCCGATCTCGACAAGGTGTC TGCTCTGGCCGCCCTCGCCGCCTCGCGCCCTGCCGCGGCGGTGGGCGTCTCGCACCGCGA CGCGCTCCAGTCCTGCGCGCAGCACGCCCGCCTCTGGCTTCGCCGTGCCGATGAGCCAAT CCACCCCGAATCCAGCATCACTTATGCAGCGGTTAGGGCGAAGTTGGACAAGATCATGGC TTCAGACTACTACACAGCGCAACCGGAGATGCCGGAGATGGGGGCTGCGGTCGATTTGTC GGCTGCTGTGCAGGAGAGCATGGTTGTGTCACCAGAGGCGCCGGCTGTGGAAGAGAGCCA GGCTGAGGGACACAAGGATGAGAAGGAGGCTTCGGAGGCTACAGAAATCTACAACGATAA TCAGCCTAATGTAGCTGATGCTCAGAATGTGGAGGATGAAGCCCCGGTGAATCCTTCTGA AGAGTTCTCAGCAGCAGAGGTGGAGCAGGAGAAGTTTGAAGCAGATGTGGAGGAACAAGA GAGGAATGCAGATCAACAGTTCACTTCTCGACGGCCTTACCAGAACCAGCGCGGTGGTGG TGGTCGTGGTGGTGGCAGGAGGGGTTACCAGAATGGAGGTCGTGGTGGACGTGGGGGGCG AGGAATGGGCGGTGGCGGGTACCAGAATGGTCGTGGTGGTGGCGGCGGCGGTGGCTACCA GAATGGCCGTGGTGGGGGTGAGGGTGGTGGGTACTACTATAATGAGCCTGGTTACTACCA GCAGAGGGGGTACAGCAACAGAGGCAGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTA CAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCT GGGCGCAAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAG AGGACATAATATGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGT CAACATTTGCCCCCCTCAGAGTTCTTTTGTCACTCCAATGACTTTCATATGGATGGTTGG TTGATAATGCGGAATACTTTGGGGAAGTAGTTTAAGGTCATATTCGTAAGCGGCCGCGAA TTCGCGGCCGCTAGCGG



consensusID : consensus_13870#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 399
fasta sequence
                              [ACCTATAATGAGCCTGGTTATCTACCACGCACGA--GGGGTACACGCAACACGAGGCCACGGGGT-GTCGCTCTGGTGGT-GCAACTCTTATTACACACCATCAAGGTGGAGGTTCGCACGGGAGGTGTCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGC-AACGCTTAGCTTCCTAACTAATTTTGCCTTGGAGGAGTGAGTGTTACG-CGAGGAGAGGACATAATCTGTGGGA-CCA-TTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTC-ACATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCCATGACTTTCATAATGGATGGTTTGGTTTGATAATCCGGGAATACTTTGGGGAAGTAGTTTAAGGTCAAATTCGTTCTCCTTAAAAAAAAA]

[+] EMBL BM421813             [ACCTATAATGAGCCTGGTTATCTACCACGCACGA  GGGGTACACGCAACACGAGGCCACGGGGT GTCGCTCTGGTGGT GCAACTCTTATTACACACCATCAAGGTGGAGGTTCGCACGGGAGGTGTCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGC AACGCTTAGCTTCCTAACTAATTTTGCCTTGGAGGAGTGAGTGTTACG CGAGGAGAGGACATAATCTGTGGGA CCA TTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTC ACATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCCATGACTTTCATAATGGATGGTTTGGTTTGATAATCCGGGAATACTTTGGGGAAGTAGTTTAAGGTCAAA                     ]
[+] EMBL BM421749             [        TGAGCCTGGTTA CTACCACGCACGAGGGGGGTACA GCNACA GAGG CACGGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACA ACAATCAAGGTGGAGGTTCGCA GGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAAACGCTTAGCTTCCTAACT ATTTTG CTTGGAGGAGTGAGTGTTACGACGAGGAGAGGACATAATCTGTGGGAGCCACTTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCCATGACTTTCAT ATGGATGG TTGG TTGATAATGC GGAATACTTTGGGGAAGTAGTTTAAGGTCATATTCGTTCTCCTTAAAAAAAAA]


>consensus_13870#1 ACCTATAATGAGCCTGGTTATCTACCACGCACGAGGGGTACACGCAACACGAGGCCACGG GGTGTCGCTCTGGTGGTGCAACTCTTATTACACACCATCAAGGTGGAGGTTCGCACGGGA GGTGTCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAACGCTTAGCTTCCTAACTAAT TTTGCCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGACCATTTTGT TATTATAGAACTAACTTAGCCCTTTATTATGTCACATTTGCCCCCCTCTGTGAGTTCTCT TGTCACTCCATGACTTTCATAATGGATGGTTTGGTTTGATAATCCGGGAATACTTTGGGG AAGTAGTTTAAGGTCAAATTCGTTCTCCTTAAAAAAAAA



consensusID : consensus_13870#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 271
fasta sequence
                              [GTGGTGGAGGTGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGNCGCAAACGCTTANCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTAGCGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAAAACTAACTTATCCCTTTATTATGTCAACATTTGCCCCCCTCAGAGTTCTTTTGTCACTCCAATGACTTTC]

[+] EMBL BE230458             [GTGGTGGAGGTGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGNCGCAAACGCTTANCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTAGCGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAAAACTAACTTATCCCTTTATTATGTCAACATTTGCCCCCCTCAGAGTTCTTTTGTCACTCCAATGACTTTC]


>consensus_13870#2 GTGGTGGAGGTGGGTGGTCGCTCTGGTGGTGGCAACTCTTATTACAACAATCAAGGTGGA GGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGNCGCAAACGCTTAN CTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTAGCGCGAGGAGAGGACATAATATGTG GGAGCCATTTTGTTATTATAAAACTAACTTATCCCTTTATTATGTCAACATTTGCCCCCC TCAGAGTTCTTTTGTCACTCCAATGACTTTC



consensusID : consensus_13870#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 248
fasta sequence
                              [GGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTTTTGTCACTCCCAAAAAAAAAA]

[+] EMBL BI799212             [GGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCCCATCCTGGGAGGGTTGAGCTGGGCGCAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGAGTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTTTTGTCACTCCCAAAAAAAAAA]


>consensus_13870#3 GGTGGTGGCAACTCTTATTACAACAATCAAGGTGGAGGTTCGCAGGGAGGTGGCCACGCC CATCCTGGGAGGGTTGAGCTGGGCGCAACGCTTAGCTTCCTAACTATTTTGCTTGGAGGA GTGAGTGTTACGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTA ACTTAGCCCTTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTTTTGTCACTCCCAA AAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13870#0      CGCCGCTCCATCTCCAAGCCCGAATCCCCAAAACCCTAGCCCACCCCCTGCCGCCATGGC 60
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      CGCCTCCCCCACCGGCTCCTCCTCCTCGGCCCCCGCCGCCGCGGCGGCGGCGGCGGCCGA 120
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GGCCACCGACGGGCCGACCCTCAGCGTCGTCTCGAAGCGGCTCCGCGCGCTGCGGAAGAA 180
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GCACAACCGGATCCTCCAGATGGAGGAGTCGCTCGCCGGCGGGAGGAAGCTCAACAGGGA 240
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GCAGGAGGGGGTGCTCCGATCCAAGCCCGCCGTCGTCGCGCTCATCGACGAGCTCGAGCG 300
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GATGCGCGCCCCTCTCGCCGCCGCCCTCGCCGAGGAGCTCTCCTCCCGCCCCGCCCCCTC 360
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      CTCCTCCGCCGCGCCGCCGCCCCCCGCATCCTCCTCCGCCGCAGGCGCCGCGGATTCGTC 420
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      CGTCGTCGAGGATCTCCTCGCGCTCATCTACTTCGGCACCCTCTTCGACCTCAAGCCGCA 480
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GACCGAGTTCGTCGCCACCATGGTCGCGCGCGCGCAGGAGCGGGACTGCTGCATCACCTA 540
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      CGACTACGTCACGGAGGACGCCGCCGACCTGCTGCACCAGTCCGATCTCGACAAGGTGTC 600
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      TGCTCTGGCCGCCCTCGCCGCCTCGCGCCCTGCCGCGGCGGTGGGCGTCTCGCACCGCGA 660
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      CGCGCTCCAGTCCTGCGCGCAGCACGCCCGCCTCTGGCTTCGCCGTGCCGATGAGCCAAT 720
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      CCACCCCGAATCCAGCATCACTTATGCAGCGGTTAGGGCGAAGTTGGACAAGATCATGGC 780
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      TTCAGACTACTACACAGCGCAACCGGAGATGCCGGAGATGGGGGCTGCGGTCGATTTGTC 840
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GGCTGCTGTGCAGGAGAGCATGGTTGTGTCACCAGAGGCGCCGGCTGTGGAAGAGAGCCA 900
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GGCTGAGGGACACAAGGATGAGAAGGAGGCTTCGGAGGCTACAGAAATCTACAACGATAA 960
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      TCAGCCTAATGTAGCTGATGCTCAGAATGTGGAGGATGAAGCCCCGGTGAATCCTTCTGA 1020
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      AGAGTTCTCAGCAGCAGAGGTGGAGCAGGAGAAGTTTGAAGCAGATGTGGAGGAACAAGA 1080
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GAGGAATGCAGATCAACAGTTCACTTCTCGACGGCCTTACCAGAACCAGCGCGGTGGTGG 1140
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      TGGTCGTGGTGGTGGCAGGAGGGGTTACCAGAATGGAGGTCGTGGTGGACGTGGGGGGCG 1200
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      AGGAATGGGCGGTGGCGGGTACCAGAATGGTCGTGGTGGTGGCGGCGGCGGTGGCTACCA 1260
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ------------------------------------------------------------
                                                                                   

consensus_13870#0      GAATGGCCGTGGTGGGGGTGAGGGTGGTGGGTACTACTATAATGAGCCTGGTTA-CTACC 1319
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      ----------------------------------ACCTATAATGAGCCTGGTTATCTACC 26
                                                                                   

consensus_13870#0      A-GCAGAGGGGGTACA-GCAACA-GAGGCAG-GGGTGGTCGCTCTGGTGGTGGCAACTCT 1375
consensus_13870#2      -----------------GTGGTG-GAGGT---GGGTGGTCGCTCTGGTGGTGGCAACTCT 39
consensus_13870#3      ---------------------------------------------GGTGGTGGCAACTCT 15
consensus_13870#1      ACGCACGAGGGGTACACGCAACACGAGGCCACGGGGTGTCGCTCTGGTGGTG-CAACTCT 85
                                                                    ******* *******

consensus_13870#0      TATTACA-ACAATCAAGGTGGAGGTTCGCA-GGGAGGTGGCCACGCCCATCCTGGGAGGG 1433
consensus_13870#2      TATTACA-ACAATCAAGGTGGAGGTTCGCA-GGGAGGTGGCCACGCCCATCCTGGGAGGG 97
consensus_13870#3      TATTACA-ACAATCAAGGTGGAGGTTCGCA-GGGAGGTGGCCACGCCCATCCTGGGAGGG 73
consensus_13870#1      TATTACACACCATCAAGGTGGAGGTTCGCACGGGAGGTGTCCACGCCCATCCTGGGAGGG 145
                       ******* ** ******************* ******** ********************

consensus_13870#0      TTGAGCTGGGCGCAAACGCTTAGCTTCCTAACTA-TTTTGC-TTGGAGGAGTGAGTGTTA 1491
consensus_13870#2      TTGAGCTGGNCGCAAACGCTTANCTTCCTAACTA-TTTTGC-TTGGAGGAGTGAGTGTTA 155
consensus_13870#3      TTGAGCTGGGCGCAA-CGCTTAGCTTCCTAACTA-TTTTGC-TTGGAGGAGTGAGTGTTA 130
consensus_13870#1      TTGAGCTGGGCGCAA-CGCTTAGCTTCCTAACTAATTTTGCCTTGGAGGAGTGAGTGTTA 204
                       ********* ***** ****** *********** ****** ******************

consensus_13870#0      -CGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCC 1550
consensus_13870#2      GCGCGAGGAGAGGACATAATATGTGGGAGCCATTTTGTTATTATAAAACTAACTTATCCC 215
consensus_13870#3      -CGCGAGGAGAGGACATAATCTGTGGGAGCCATTTTGTTATTATAGAACTAACTTAGCCC 189
consensus_13870#1      -CGCGAGGAGAGGACATAATCTGTGGGA-CCATTTTGTTATTATAGAACTAACTTAGCCC 262
                        ******************* ******* **************** ********** ***

consensus_13870#0      TTTATTATGTCAACATTTGCCCCCCTCAG--AGTTCTTTTGTCACTCCAATGACTTTCAT 1608
consensus_13870#2      TTTATTATGTCAACATTTGCCCCCCTCAG--AGTTCTTTTGTCACTCCAATGACTTTC-- 271
consensus_13870#3      TTTATTATGTCAACATTTGCCCCCCTCTGTGAGTTCTTTTGTCACTCCCAAAAAAAAAA- 248
consensus_13870#1      TTTATTATGTCA-CATTTGCCCCCCTCTGTGAGTTCTCTTGTCACTCC-ATGACTTTCAT 320
                       ************ ************** *  ****** ********** *  *       

consensus_13870#0      A-TGGATGGTTGG--TTGATAATGCGG-AATACTTTGGGGAAGTAGTTTAAGGTCATATT 1664
consensus_13870#2      ------------------------------------------------------------
consensus_13870#3      ------------------------------------------------------------
consensus_13870#1      AATGGATGGTTTGGTTTGATAATCCGGGAATACTTTGGGGAAGTAGTTTAAGGTCAAATT 380
                                                                                   

consensus_13870#0      CGTAAGCGGCCGCGAATTCGCGGCCGCTAGCGG 1697
consensus_13870#2      ---------------------------------
consensus_13870#3      ---------------------------------
consensus_13870#1      CGTTCTCCTTAAAAAAAAA-------------- 399
                                                        




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)