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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13879#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 658 fasta sequence
[CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACCTACAAACTCT-AAATCATGGTAAATTAATCCAAAAAAAAAAAACTCG]
[+] EMBL CF339665 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACCTACAAACTCT AAATCATGGTAAATTAATCCAAAAAAAAAAAACTCG]
[+] EMBL CF339204 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTA CTACAAACTCTAAAATCATGGT ]
[+] EMBL CF338293 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTCTCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACt ]
[+] EMBL CF338604 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGT ]
[+] EMBL CF340573 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGATGATCGTGTG ]
[+] EMBL CF338718 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCT ]
[+] EMBL CF340507 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCT ]
[+] EMBL CF340315 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGAAAATTATAGTGTTTATAAGTAG ]
[+] EMBL CF340329 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCG ]
[+] EMBL CF340250 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACCAC ]
[+] EMBL CF338466 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCAACACCATCCACC ]
[+] EMBL CF339303 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCTCGGCCTCACCCGCGCCGCCGCGCTCGGCCTCGCCCCACCGCCCGCCGTCATCGCCTTCTGCTCCGACGACCAGCCATGCCTCTGGGAGGGCCG ]
[+] EMBL CF339332 [CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAATCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCCATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGTGCCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGGCGGAGGATGAGGGGCGAGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGAGCTAAGGGCCCTGCCT ]
consensusID : consensus_13879#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 481 fasta sequence
[CCCGCCACCACCACAAGCCCGCGTCGCAGCGACGCCAGATCGCCCGTCGACGACGCGAGGAGGCACGTCGAGGAGCGGAGGAGGAGGAGGGCGGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGTGCCGCCGCGCTCGGCCTCGCCCCGCCGCCCGTTCGGTCATCGCCCGGTCTTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCACCACACCCGATCGACCGATCCGCTTCCAGAAAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGCATCGACAGTTCATTTCAAACCGCTGCCTGATGAGTCAGTGATCGGTGCCATCTTGTGTTCTTATTATCTGAAATTTATGATGTTGTTCTTCTTAAAAA]
[+] EMBL BI805219 [CCCGCCACCACCACAAGCCCGCGTCGCAGCGACGCCAGATCGCCCGTCGACGACGCGAGGAGGCACGTCGAGGAGCGGAGGAGGAGGAGGGCGGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTACGGGCCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGTGCCGCCGCGCTCGGCCTCGCCCCGCCGCCCGTTCGGTCATCGCCCGGTCTTGCTCCGACGACCAGCCGTGCCTCTGGGAGGGCCGCGTCTAGCTCTAGCACCACACCCGATCGACCGATCCGCTTCCAGAAAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGCCACGCCTCGTGGTGCTTGCATCGACAGTTCATTTCAAACCGCTGCCTGATGAGTCAGTGATCGGTGCCATCTTGTGTTCTTATTATCTGAAATTTATGATGTTGTTCTTCTTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13879#0 CCCAACCCAACGCCTTAACCCTATAAACTTCCCTCTCCTTCCCCTTCCCCTTCCCCCGAA 60
consensus_13879#1 ------------------------------------------------------------
consensus_13879#0 TCCATCCTACCTCGCCGCAACAATCCAGAGAGATCATCGAGAGAGGAGTCCACCGGACCC 120
consensus_13879#1 ------------------------------------------------------------
consensus_13879#0 ATGAGGAGCGGCGGCGACGTCAAGTCCTTCCGGCAGCGTCAAGCCCACCGGCGGCGT--G 178
consensus_13879#1 -------------------------------------------CCCGCCACCACCACAAG 17
*** ** * * *
consensus_13879#0 CCGGCGTCTCCAAGAAGGCGCCCGCGTCGCAGGCGACGACAGATCGCGCCGTCGAGGAGG 238
consensus_13879#1 CCCGCGTCGCAGCGACGCCAGATCGCCCGTCGACGACGCGAGGAGGCAC-GTCGAGGAG- 75
** ***** * ** * * ** * ***** ** ** * *********
consensus_13879#0 CGGAGGATGAGGGGCG-AGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTAAGGA 297
consensus_13879#1 CGGAGGAGGAGGAGGGCGGAGAGGATGGCTCGGGAGTTCGACATGGACATGCGGTACGGG 135
******* **** * * ************************************** **
consensus_13879#0 GCTAAG---GGCCCTGCCTCGGCCTCAC-------CCGCGCCGCCGCGCTCGGCCTCGCC 347
consensus_13879#1 CCCTGCCTCGGCCTCACCCGCGCCCAGCGCTGGCGCCGTGCCGCCGCGCTCGGCCTCGCC 195
* **** ** *** * *** *********************
consensus_13879#0 CCACCGCCCGCC--GTCATCGCC---TTCTGCTCCGACGACCAGCCATGCCTCTGGGAGG 402
consensus_13879#1 CCGCCGCCCGTTCGGTCATCGCCCGGTCTTGCTCCGACGACCAGCCGTGCCTCTGGGAGG 255
** ******* ********* * ***************** *************
consensus_13879#0 GCCGCGTCTAGCTCTAGCAACACCATCCACCACCACCCGATCGGCCGATCCGCTTCCAGA 462
consensus_13879#1 GCCGCGTCTAGCTCTAGCACCAC-----------ACCCGATCGACCGATCCGCTTCCAGA 304
******************* *** ********* ****************
consensus_13879#0 AAATTATAGTGT----------TTATAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGC 512
consensus_13879#1 AAGTTCTAGTAGCTTGTATGTGTTTTAAGTAGGAACAGCTTCTCCTCTGCTTCCATCTGC 364
** ** **** ** ***********************************
consensus_13879#0 CACGCCTCGTGGTGCTTGATGATCGTGTGTTCTTATCTGAAATTTATGATGTTATTCTTC 572
consensus_13879#1 CACGCCTCGTGGTGCTTGC--ATCGACAGTTC--ATTTCAAAC---------CGCTGCCT 411
****************** **** **** ** * *** *
consensus_13879#0 TCCCAGTTGGTATGATCTATGGCATTTTGATTTGATTACCTACAAACTCTAAATCATGGT 632
consensus_13879#1 GATGAGTCAGT--GATCGGTGCCATCTTGTGTT-----CTTATTATCTGAAATTTATGAT 464
*** ** **** ** *** *** ** * ** * ** ** * *** *
consensus_13879#0 AAATTAATCCAAAAAAAAAAAACTCG 658
consensus_13879#1 GTTGTTCTTCTTAAAAA--------- 481
* * * *****
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||