cluster # 13881

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Oryza sativa
cluster # 13881 cluster # 13881 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13881#0 length = 1590 sequences # 10

consensus_13881#1 length = 852 sequences # 2
consensus_13881#2 length = 487 sequences # 2

consensusID : consensus_13881#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1590
fasta sequence

                              [GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAG-ACGACGACGACGTC-TGCGCACTGCG-AGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGGGGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTCTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGTCCCGTCCCTTCTTTGGTTTCCTCCTCCC-CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAGAAGTACAGTTATACTTAGATTGATACCTTAAAAGG]

[+] EMBL OSS5009A             [GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAGAACGACGACGACGTC TGCGCACTGCG AGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGGGGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTNTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTTCAACCCCGTCCTCCNCCTCGTCCNGTCCCTTCTTTGGTTTCCTCCTCCCNAAATCCGAGGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AK072560             [                                   CGCGGGCGCGCGCGCGCGAG ACGACGACGACGTCGTGCGCACTGCGCAGCGCAGAGGGGGGGTTTTGCCGAGATTTTCCTAAAAAGGGGACCTCGCCACCGTACCGAGAAAAGAAAAAGAATACGAGGCGAAAACCAACACCTCTCTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGTCCCGTCCCTTCTTTGGTTTCCTCCTCCC CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGA                                                                ]
[+] EMBL AK104046             [                                                                                                                                                                                     CTCTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGTCCCGTCCCTTCTTTGGTTTCCTCCTCCC CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCCGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGG                                                                                                                                                                                  ]
[+] EMBL CB685319             [                                                                                                                                                                                                                                           CCCCCCTTCCCGTCCCTTCTTTGGTTTCCTCCTCCC CAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CB628714             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  AGAGTAAGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTTCTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCCCTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGT                                                                                                                                                                                 ]
[+] EMBL CF322995             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ACAAAGTCCCTCTTCTTACATTGTCAAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGTCGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATG                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB654206             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ATTGAGGCCTCTACAGGTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAGAAGTACAGTTATACTTAGATTGAT           ]
[-] EMBL CB653976             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    GTTGTCGTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATAGTCTTGAGCCTTACAGTTATACTTAGATTGATACCTTAAAAGG]
[+] EMBL CA763979             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTGAACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGGTTGCAAGCTGCTATCGAAGC                                                             ]
[+] EMBL AU097454             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             ATGAGCAAAGCTTTCATGATGGTNTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATTTTAACTCNTAACTGACAGATGATGGATGAGTAGCGNGGCGAAATCNTCCCCTATGGTTGTATAATNAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGAATTCTTAGTTANTGTGAGNTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAAAAaaa                              ]




>consensus_13881#0
GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAGACGAC
GACGACGTCTGCGCACTGCGAGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGG
GGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTCT
CTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGT
CCCGTCCCTTCTTTGGTTTCCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCC
GCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGG
GCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC
TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC
TGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGC
GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC
GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTA
AGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTC
AAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGT
CGCCTTCTTGGACCAAGGGGAAATTCGTTGAAGAGGATTGAGGCCTCTACAGGTTGTCGT
GTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGGGA
AGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTACCT
GCCAATGTCATTGACGCTAGACTCGCAAAAGCACAAGAAATCCTAGAAGAGTTGTTGAAA
CCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTTTGTTG
AACTCACCACTTAGAGAGGAAAGCCCACATCCTGGTAGTGCTTCTCCATTCAGTAATGGT
GGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACCCTCCAA
GAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTTTCATGA
TGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGTGACATT
TTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTATGGTTGT
ATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTGTGAAGA
ATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTTGTCTGA
GCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGAGAAGTA
CAGTTATACTTAGATTGATACCTTAAAAGG

consensusID : consensus_13881#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 852
fasta sequence

                              [CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATGGGTAACATTTTGATCAGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCCGCCTCTTAACCT]

[+] EMBL CB653975             [CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCA                                                                                           ]
[+] EMBL CB677569             [                                GCCGCCGCCGCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATGGGTAACATTTTGATCAGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCCGCCTCTTAACCT]




>consensus_13881#1
CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCCGCCGCCGCCATCGCCATGG
ACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGGGCCATGTCGCCGCAGGTCA
GGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGG
AGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATC
AAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGT
CGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTA
ATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGCATTAGTTATCCAAGTACAC
GAACACGCTATATGCAGTCATGTATCGTATTTGATCACTAATCTGCAGGAGCTGTTAAAC
ATTTCTACAAAAGGACTGCTATGTAAAATATCACTGATAAGTTGCGTTATACTTATTAGA
ATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCC
ATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTA
TACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAG
CTTTTCTACATCGAACCTCGTGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATG
GGTAACATTTTGATCAGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCC
GCCTCTTAACCT

consensusID : consensus_13881#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 487
fasta sequence

                              [GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG]

[+] EMBL CF303188             [GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG]
[+] EMBL CF303072             [   GCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCCATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGAATGATTACTATACATGTCACAACAGGTAGCCTATGGCC                             ]




>consensus_13881#2
GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTACTTGGCGGA
GTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATCTGCAGCAG
GCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGCGTAGGGGA
CTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATCGTGCCCAA
TTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAATTGCGATATGCA
AGGATGGAAACAAATGAATGCGCAAGGTCCTCAATTTATAGGGTGCCATCAATTTAATCC
ATCAAGGTCCTCTTGAAGTAAAACTGGCTTTTAAAGAGTATTATGTATACCCTTAAAAGA
ATGATTACTATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCG
AACCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GTAAACCCTACCGGCGAAGAGGTTGACGGCGGCGGCGCGGGCGCGCGCNCGCNAGACGAC 60
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GACGACGTCTGCGCACTGCGAGCGCAGAGGGGGGGTTTTTCCGAGATTTTCCTAAAAAGG 120
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GGACCTCGCCACNGTACCGAGAAAAGAAAAAGANTACGAGGCGAAAACCAANACCTCTCT 180
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      CTCGTCTCTCCCCCTCCCCGACTCGACTCGACTCGACTCCACCCCCGTCCTCCCCCTCGT 240
                                                                                   

consensus_13881#1      -------------------CCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCC 41
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      CCCGTCCCTTCTTTGGTTTCCTCCTCCCCAATCCGAGGGGTGGCTGGGGCCGCCGCCGCC 300
                                                                                   

consensus_13881#1      GCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGG 101
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GCCGCCGCCATCGCCATGGACGGGCTGCACGGTACGGACGGCTGCTTCTCTCCCGGGCGG 360
                                                                                   

consensus_13881#1      GCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC 161
consensus_13881#2      --------GGCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC 52
consensus_13881#0      GCCATGTCGCCGCAGGTCAGGCCCCCCGTCCCGCCCGACGCTGCCAGCGGCGGGCAGTAC 420
                               * **************************************************

consensus_13881#1      TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC 221
consensus_13881#2      TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC 112
consensus_13881#0      TTGGCGGAGTTGTTGCAGGAGCATCAGAAGCTGGGGCCGTTCATGCAGGTGCTCCCAATC 480
                       ************************************************************

consensus_13881#1      TGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGC 281
consensus_13881#2      TGCAGCAGGCTGTTGAATCAAGAGATAATGCTAGTGTCTGGGATGTTTCGGCAACCCGGC 172
consensus_13881#0      TGCAGCAGGCTGTTGAATCAAGAGATAATGCGAGTGTCTGGGATGTTTCGGCAACCCGGC 540
                       ******************************* ****************************

consensus_13881#1      GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC 341
consensus_13881#2      GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC 232
consensus_13881#0      GTAGGGGACTTCGAGAGGTCGCAACCTGCAAGCCCAAATCAGATGCATCCGTCGCACATC 600
                       ************************************************************

consensus_13881#1      GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGGTGAGC 401
consensus_13881#2      GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAG------ 286
consensus_13881#0      GTGCCCAATTTCTGTGGTAATGCTTTTGGTCCATGGAATGGGATGCGTCCAGAGAGAGTA 660
                       ******************************************************      

consensus_13881#1      ATTAGTTATCCAAGTACACGAACACGCTATATGCAGTCATGTA--TCGTATTTGATCACT 459
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      AGTTTCTCTCAAGGACCAGGTTGGCAAGGAGCACCACAAAGTCCCTCTTCTTACATTGTC 720
                                                                                   

consensus_13881#1      AATCTGCAGGAGCTGTTAAACATTTCTACAAAAGGAC-TGCTATGTAAAATATCACTGAT 518
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      AAGAAGATCTTGCGGTTGGAAATACCGACAGATGCTTACCCTAATTTCAATTTTATTGGT 780
                                                                                   

consensus_13881#1      AAGTTGCGTTATACTTATTAGAATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAA 578
consensus_13881#2      ---------------------AATTGCGATATGCAAGGATGGAAACAAATGAATGCGCAA 325
consensus_13881#0      CGCCTTC-TTGGACCAAGGGGAAATTCGTTGAA-GAGGATTGAGGCCTCTACAGGTTGTC 838
                                            ** * ** *     ***** **  *   *  * *     

consensus_13881#1      GGTCCTCAATTTATAGGGTGCCATCAATTTAA---TCCATCAAGGT----CCTCTTGAAG 631
consensus_13881#2      GGTCCTCAATTTATAGGGTGCCATCAATTTAA---TCCATCAAGGT----CCTCTTGAAG 378
consensus_13881#0      GTGTTTTCATAAGAGGAAAGGGCTCAATTAAAGACCCTAACAAGGAGGAGCAACTTAAGG 898
                       *    *  **     *   *   ****** **    * * *****     *  *** * *

consensus_13881#1      TAAAA-CTGGCT-------TTTAAAGAGTATTATGTATACCCTTA--AAAGAATGATTAC 681
consensus_13881#2      TAAAA-CTGGCT-------TTTAAAGAGTATTATGTATACCCTTA--AAAGAATGATTAC 428
consensus_13881#0      GAAGGGCTGGGTATGAACACTTGGATGATCCCCTGCATATCTTGATTGAAGCCGAGTTAC 958
                        **   **** *        **  *   *    ** *** * * *   ***     ****

consensus_13881#1      -TATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG 740
consensus_13881#2      -TATACATGTCACAACAGGTAGCCTATGGCCATCATATAGCTTTTCTACATCGAACCTCG 487
consensus_13881#0      CTGCCAATGTCATTGACGCTAGACTCGCAAAAGCACA-AGAAATCCTAGA--AGAGTTGT 1015
                        *    ******     * *** **      * ** * **   * *** *    *  *  

consensus_13881#1      TGTGGTTTATAGAAGAGGTCAGTGATTTTTATTTGGAATGGGTA-----ACATTTTGATC 795
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      TGAAACCAGTGGATGAATCGCAAGATTACTACAAGAGACAGCAACTCCGAGAACTTGCTT 1075
                                                                                   

consensus_13881#1      AGCTCATCTTGACTTTTGTCATGCAAGATCCACTTCTCCCCTGCCGCCTCTTAACCT--- 852
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      TGTTGAACTCACCACTTAGAGAGGAAAGCCCACATC-CTGGTAGTGCTTCTCCATTCAGT 1134
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      AATGGTGGCATGAAACGGATGAAACAATGACTGGATGCTTGTTCCTCCTCCTCCTTGACC 1194
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      CTCCAAGAGAAATCAATCAATCCATGCCTTCACAACTTAAATTTTTCATGAGCAAAGCTT 1254
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      TCATGATGGTGTTGGCATTCGCGCGGCAATCTGTTACTGCTAGAATTTTGATCTCCATGT 1314
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GACATTTTAACTCATAACTGACAGATGATGGATGAGTAGCGAGGCGAAATCCTCCCCTAT 1374
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GGTTGTATAATTAGAACATTTGATTTATTTATTACTGGTAGTGCTGAGATACTGATAGTG 1434
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      TGAAGAATTCTTAGTTACTGTGAGCTAGAGTACCAGGGATTTGTCTGCCTTGGGTGACTT 1494
                                                                                   

consensus_13881#1      ------------------------------------------------------------
consensus_13881#2      ------------------------------------------------------------
consensus_13881#0      GTCTGAGCAACATGTTTGCAAGCTGCTATCGAAGCATTTGTCAAGATGGAATATTCTTGA 1554
                                                                                   

consensus_13881#1      ------------------------------------
consensus_13881#2      ------------------------------------
consensus_13881#0      GAAGTACAGTTATACTTAGATTGATACCTTAAAAGG 1590