cluster # 13885

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13885 cluster # 13885 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13885#0 length = 1145 sequences # 3

consensus_13885#1 length = 1073 sequences # 9
consensus_13885#2 length = 184 sequences # 2

consensusID : consensus_13885#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1145
fasta sequence

                              [TGGACTGAAGGCGTAGAAAGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCGAGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACATCGGCAAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATG-TTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAAGTGTTTGCTTCTGCACTGACATTTGTTGCCTTGTTGCTCTAACTTACTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGCCAGGTGACAGCGATGCTCTTGCACTTGGGAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACCGATATAATTGTGGTTGCTCTTGAAAAACAAAAAAACA]

[+] EMBL CF331776             [TGGACTGAAGGCGTAGAAAGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCGAGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACATCGGCAAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGNTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CB663107             [          ctcccccctGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCGAGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATG TTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAAGTGTTTGCTTCTGCACTGACATTTGTTGCCTTGTTGCTCTAACTTACTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATA                                                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB663108             [                                                                                                                                                                                                                                                                                                                                                                                                                                   CCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAAATAATTTATTATGAGGCAGCAAGTGTTTGCTTCTGCACTGACATTTGTTCCCTTGTTGCTCTAACTTCCTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTACCAAGCAAGACATGAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTTTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCACCACCTCTGGACGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGCCAGGTGACAGCGATGCTCTTGCACTTGGGAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACCGATATAATTGTGGTTGCTCTTGAAAAACAAAAAAACA]




>consensus_13885#0
TGGACTGAAGGCGTAGAAAGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCGAGT
ACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCT
ACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGC
AACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTC
TATAAGCTGCACATCGGCAAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAG
AAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTG
AGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCC
CTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTATAA
ATAATTTATTATGAGGCAGCAAGTGTTTGCTTCTGCACTGACATTTGTTGCCTTGTTGCT
CTAACTTACTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCTTAA
TAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGAGGGGCGCAATGACTCCGATGGA
AGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAAC
CTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGA
TGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGA
TAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATT
TGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAA
GCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGCCAGGTGACAGCGATGCTCTTGCAC
TTGGGAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGT
TGTAAATATATGAAGCTGCTACTGTACCGATATAATTGTGGTTGCTCTTGAAAAACAAAA
AAACA

consensusID : consensus_13885#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1073
fasta sequence

                              [TCCTCTCTCGTGTCTCCCCCCTGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCGAGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACAT-CGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATT-GGTGTTTGCTAACAAGCAAGACAT-----GAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC-ACTTGGGA-GGAGTGGTT-GGTTTACTTAC-TGAAA-GTTCATCTTTT-CGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCAGTTGTATTCGTGAATTTTCAGATTCGAAAAAAAGTGTGTAAAAA]

[+] EMBL AK068771             [TCCTCTCTCGTGTCTCCCCCCTGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCGAGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACAT CGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATT GGTGTTTGCTAACAAGCAAGACAT     GAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC ACTTGGGA GGAGTGGTT GGTTTACTTAC TGAAA GTTCATCTTTT CGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGT                                                            ]
[+] EMBL AK070151             [                                                AGGCTCCAGCCGAGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACAT CGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATT GGTGTTTGCTAACAAGCAAGACAT     GAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC ACTTGGGA GGAGTGGTT GGTTTACTTAC TGAAA GTTCATCTTTT CGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCAGTTGTATTCGTGAATT                            ]
[+] EMBL CF323714             [                                                                           CTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCCGCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACATNCGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATTGGGTGTTTGCTAACAAGCAAGACATGTGTAGAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB646426             [                                                                                                                                                                      TCGACGCCTTCTTCGGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATACTCTATAAGCTGCACAT CGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTGGAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAATTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATT GGTGTTTGCTAACAAGCAAGACAT     GAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC ACTTGGGA GGAGTGGTT GGTTTACTTAC TGAAA GTTCATCTTTT CGTGGGAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGT                                                                          ]
[+] EMBL OSS3586A             [                                                                                                                                                                                                                                                                                                                                                                                                                          ACGTAGTTGATTCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGACCCTTTTATGCTTAATAGTGTTCTATT GGTGTTTGCTAACAAGCAAGACAT     GAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATC                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL AU030243             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ACCCTTTTATGCTTAATAGTGTTCTATT GGTGTTTGCTAACAAGCAAGACAT     GAGGGGCGCAATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC ACTTGGGA GGAGTGGTT GGTTTACTTAC TGAAA GTTCATCTTTT CGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCAGTTGTATTCGTGAATTTTCAGATTCGAAAAAAA           ]
[+] EMBL C28316               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        TATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCNCTATGTGGATTGACTTGATGCCTGCATCTNGCTTTCTTTTCCATTTNATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTAAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGGAAGANAGGTGACAGTGATGCACTTGCAATTTGGGAGGGAGTGGTTGGGTTTACTTACTTGAAAGGTCCATCTTTTCCGTGGGAACGGGgaat                                                                                                     ]
[+] EMBL AU092876             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATATGGCATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC ACTTGGGA GGAGTGGTT GGTTTACTTAC TGAAA GTTCATCTTTT CGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCAGTTGTATTCGTGAATTTTCAGATTCGAAGAGTTGTGTGTAAAAA]
[-] EMBL CF331777             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        AGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGC TTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTGC ACTTGGGA GGAGTGGTT GGTTTACTTAC TGAAA GTTCATCTTTT CGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAAaaaa                                           ]




>consensus_13885#1
TCCTCTCTCGTGTCTCCCCCCTGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCG
AGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCC
GCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTC
GGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATA
CTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTG
GAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAA
TTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGAT
TCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGCCATTATTAATGAC
CCTTTTATGCTTAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGAGGGGCGCA
ATGACTCCGATGGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGG
CATATCCAAGGAACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTA
GCAACAACTCTGGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGA
AGAATAACAAGGGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTG
CTTTCTTTTCCATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGA
GGCTTTTTAGTAAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAG
TGATGCACTTGCACTTGGGAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTG
GAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCT
CTTGAACCAGTTGTATTCGTGAATTTTCAGATTCGAAAAAAAGTGTGTAAAAA

consensusID : consensus_13885#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 184
fasta sequence

                              [ATGGACTGAAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCCGTTGTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATTTATCTTAT]

[-] EMBL CF321742             [ATGGACTGAAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCCGTTGTATTGAAAAAAAAAAAAAAAAAA                                      ]
[+] EMBL CF321743             [           GAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGTGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCAGTTGTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATTTATCTTAT]




>consensus_13885#2
ATGGACTGAAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAG
TGGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCCG
TTGTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATTTATC
TTAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13885#0      ---TGGACTGAAGGCGTAGAAAGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCG 57
consensus_13885#1      TCCTCTCTCGTGTCTCCCCCCTGGCTCCCTTGGCTTTGGCTCCGCTCCAGGCTCCAGCCG 60
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      AGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCC 117
consensus_13885#1      AGTACCCGCCTCCTCCTCCTCGCTCGCCGCGGAATCTTCTGGAAGCTTCTAGATCCGGCC 120
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTC 177
consensus_13885#1      GCTACGATCGGCGAAGAAGGGATGGGGCAGGCCTTCCGCAAGCTCTTCGACGCCTTCTTC 180
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATA 237
consensus_13885#1      GGCAACAAGGAGATGCGGGTGGTGATGCTTGGGCTAGATGCCGCGGGGAAGACCACCATA 240
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      CTCTATAAGCTGCACATCGGCAAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTG 297
consensus_13885#1      CTCTATAAGCTGCACATCGGCGAAGTTCTCTCCACCGTCCCCACTATAGGCTTCAACGTG 300
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAA 357
consensus_13885#1      GAGAAAGTTCAATACAAGAATGTGGTGTTCACTGTGTGGGATGTTGGTGGCCAGGAAAAA 360
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      TTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGAT 417
consensus_13885#1      TTGAGGCCCTTATGGAGGCACTACTTCAACAACACCGATGCTCTGATCTACGTAGTTGAT 420
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      TCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGGTTTACATATATGTA 477
consensus_13885#1      TCCCTGGATAGAGAGAGGATTGGGAGAGCCAGAGCTGAATTTCAGG-------------- 466
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      TAAATAATTTATTATGAGGCAGCAAGTGTTTGCTTCTGCACTGACATTTGTTGCCTTGTT 537
consensus_13885#1      ------------------------------------------------------------
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GCTCTAACTTACTGTGTGGTAATCTGTCTTTCAGGCCATTATTAATGACCCTTTTATGCT 597
consensus_13885#1      -----------------------------------CCATTATTAATGACCCTTTTATGCT 491
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      TAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGAGGGGCGCAATGACTCCGAT 657
consensus_13885#1      TAATAGTGTTCTATTGGTGTTTGCTAACAAGCAAGACATGAGGGGCGCAATGACTCCGAT 551
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGG 717
consensus_13885#1      GGAAGTATGCGAGGGCCTTGGTCTATATGACCTGAACAACCGTATATGGCATATCCAAGG 611
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      AACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCT 777
consensus_13885#1      AACCTGTGCTCTCAAAGGCGATGGCCTCTATGAAGGATTGGACTGGTTAGCAACAACTCT 671
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAG 837
consensus_13885#1      GGATGAGATGCGAGCTTCAGGGCGGATAACTTCAACATCATCGTCATGAAGAATAACAAG 731
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      GGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCC 897
consensus_13885#1      GGATAGTTGATCCTTGCGCTATGTGGATTGACTTGATGCCTGCATCTTGCTTTCTTTTCC 791
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      ATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGT 957
consensus_13885#1      ATTTGATTTCCTCCTCTCCTGTTGTAGCTATTGGTCGTGAACTGGGCGAGGCTTTTTAGT 851
consensus_13885#2      ------------------------------------------------------------
                                                                                   

consensus_13885#0      AAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGCCAGGTGACAGCGATGCTCTTG 1017
consensus_13885#1      AAAGCTTTGATTCAGGCAAAACTGTAGTGTTACGAAAGACAGGTGACAGTGATGCACTTG 911
consensus_13885#2      ---------------------------------------------------------ATG 3
                                                                                 **

consensus_13885#0      CACTTGGGAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGT 1077
consensus_13885#1      CACTTGGGAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGT 971
consensus_13885#2      GACT--GAAGGAGTGGTTGGTTTACTTACTGAAAGTTCATCTTTTCGTGGAAGCGGGAGT 61
                        ***  * ****************************************************

consensus_13885#0      GGTTGTAAATATATGAAGCTGCTACTGTACCGATATAATTGTGGTTGCTCTTGAAAAACA 1137
consensus_13885#1      GGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCAGT 1031
consensus_13885#2      GGTTGTAAATATATGAAGCTGCTACTGTACTGATATAATTGTGGTTGCTCTTGAACCCGT 121
                       ****************************** ************************     

consensus_13885#0      AAAAAACA---------------------------------------------------- 1145
consensus_13885#1      TGTATTCGTGAATTTTCAGATTCGAAAAAAAGTGTGTAAAAA------------------ 1073
consensus_13885#2      TGTATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGCCGTTATTTATCT 181
                          *                                                        

consensus_13885#0      ---
consensus_13885#1      ---
consensus_13885#2      TAT 184