These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13889#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2162 fasta sequence [ATCCGAAGCCGTCTTCCTCCTCCCCCCACGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACATGCT-GGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGGGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGCATGCCGTTTATCTGTTGTTCCATTTTTTTTACCACAATTTTTGGGTAGCATATATAGAAACCACACCATGAGACATTTTCTATGTGTAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGTGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC-TCGTATGGATTAGCGCAAGCATCATTTCCA-TTTGCCCCAGCGCAA-GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT-TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC-TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT-TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGTTTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGCATGCCCAGGATGCATACATCCGACATT] [+] EMBL AK100401 [ATCCGAAGCCGTCTTCCTCCTCCCCCCACGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACATGCT GGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGGACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGGGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGCATGCCGTTTATCTGTTGTTCCATTTTTTTTACCACAATTTTTGGGTAGCATATATAGAAACCACACCATGAGACATTTTCTATGTGTAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGTGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCATATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGGTATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGTTTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGCATGCCCAGGATGCATACATCCGACATT] [+] EMBL CB656679 [ ACGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACATGCT GGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGGATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGG ] [+] EMBL CB632826 [ CGCCGGCGACGACGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGGCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACGAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGA AGCCTGGGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAGCAGAAGCTGATGGCGCAGCGAGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTGGCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGGCTGCAGGCGCAGGGGCAGGCGGCGAGGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCTAGGCCCGCGACCCCGTCGAGGCCGAGCTGCAGCATGCGCACGCCGAGGCGCAGGGCCTCGTCTTCGCGAGGCAGCAGGTGGCCGCCGACACGCAGAATCTGAGCAAGGACCTGCAGATGAACCTCTGCG ] [+] EMBL CB640387 [ CGACCAACCCTAGACCCGCCGCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCGCATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTACCACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATGCCGGGGCCGTTCCCGTACGACA ] [+] EMBL CA999196 [ GCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAA ] [-] EMBL CB656680 [ GTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCATATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATT ] [-] EMBL CB632827 [ CACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCGTATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCCCCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCCCAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGTTCTGCAAGATGGGAATGCTTCTGTAAAGCGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATCCCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTTTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATCCCCTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTC ] [+] EMBL BQ907148 [ CTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCC TCGTATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATTNCGTCAAAGTTAGTCGATTGTTTGTTAaaaaaa ] [+] EMBL BI812788 [ taGCACATGCACAGGA CAA CTTCATATGGACACGCACAGCTACCATCC TCGTATGGATTAGCGCAAGCATCATTTCCACTTTGCCCCAGCGCAA GGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCC CAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGC AAAGTTGTCTACTGATGGATTGTTATTGGC AAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCTGTTCCACAGCTACC AATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTC AAGTTAGTCGATTGTTTGTTAGTTC AACTC AATGCTGCATGTATGATATGAGATATAC CTGCTAaaaaaaaa ] [+] EMBL BQ907632 [ GACACGCACAGCTACCATCCGTCGTATGGATTAGCGCAAGCATCATTTCCA TTTGCCCCAGCGCAATGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCC TTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATT TGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAAaaaaaaa ] consensusID : consensus_13889#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 854 fasta sequence [GCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGT-TATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTC] [+] EMBL CB642619 [GCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTCGACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTGCAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGACACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCGCTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAGTACGAAAGGAAACTCAGGATGGATCACTCCGAGTCGCTGCAGGTGATGAAGAGGAATTATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAATATTGACAGAGGAGGTATGCTATACAATACTAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGT TATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTATGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAGGGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGCACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATCAAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGCTGCATCCGCTTATGGATCTGCACAAGTGCCACAGTC] [+] EMBL CA999132 [ GCCTAGTCTTCCTGTTGGACAAATTGCTTATGATAGCGGTATATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAGCGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCGATATGTATGACGCTTCTCGGATTGCTAGCTTCACTTCTTCAAAAGCTGGA ] consensusID : consensus_13889#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 741 fasta sequence [GGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCCTCATATGGATTAGCGCAAGCATCATTTCCATTTGCCCCAGCGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCA-AGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT-TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATTTGTCA-AAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATAGGCCCGTGCTGGAGATTCTCAATGTTTAGGGGCCTTAAAAG] [-] EMBL CB642620 [GGATCTGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGAGCAACCTTCATATGGACACGCACAGCTACCATCCTCATATGGATTAGCGCAAGCATCATTTCCATTTGCCCCAGCGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCA AGCACCTCATGGACGTAAATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGAGTTCAGTTTCCT TTCCACAGCTACCAAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAGGTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTGATTTGTCA AAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATGAGATATACACTGCTAGTTCTGGGAGGTTAATAATAGGCCCGTGCTGGAGATTCTCAATGTTTAGGGGCCTTAAAAG] [+] EMBL BI812979 [ ctGGCAAGCAGCAACTAATCCT GCAGGGCTTACCACAGCACCTCATGGACGTAAATAAATCGCCAAA TTGTCTACTGATGGATTGTTATTGCCCAAAGAGACCATGCGCTGCTTTGTACCCCCGAGTTCAGTTTCCTGTTCCACAGCTACCCAATCTTGTCGTTTAACTGATATGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCCGGTTAGGCAACCCCTGGAAGCCTGAATTCTGACCAGAGCTGTAACTGTTGATTCTTATTTGATTTGTCACAAGTTAGTCGATTGTTTGTTAGTTCCAACTCCAATGCTGCATGTATGATATGAGATATACCCTGCTAGTTCTGGGAGGTTAAAAAaaaaa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13889#0 ATCCGAAGCCGTCTTCCTCCTCCCCCCACGCCGGCGACGACGACCAACCCTAGACCCGCC 60 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 GCCTCCTCCGCCGCCGCCGCCGCCGCCGGCCACCGCGAGAGGTAACGACCTCTCCTCCCG 120 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 CATCTCCCCCTCCCTCTCCTTCCCACCATGGGGAGCAAGGGGAGGGCGCCGCCGCCTTAC 180 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 CACCACCGGGGGGCGCACAAGATGATGCACCGGGACCCGTACGGGGGGGCACCGGGGATG 240 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 CCGGGGCCGTTCCCGTACGACATGCTGGCGGCGGCGGCGCCGCCGCCGGAGATCCTGGAG 300 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 CAGAAGCTGATGGCGCAGCGGGGGGAGCTGCAGAAGCTGGCGGTGGAGAACGACCGGCTG 360 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 GCGATGAGCCACGACTCGCTGCGGAAGGAGCTCGCCGCGGCGCAGCAGGAGGCGCAGAGG 420 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 CTGCAGGCGCAGGGGCAGGCGGCGATGGCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTC 480 consensus_13889#1 ---------------------------GCGGCCGAGGAGCAGGAGGCGAGGGGGATCCTC 33 consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 GACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTG 540 consensus_13889#1 GACAAGGTCGCCAAGATGGAGGCCGACCTCAAGGCCCGCGACCCCGTCAAGGCCGAGCTG 93 consensus_13889#2 -------------------------------GGATCTGCACAAGTGCCACAGTC-ACATG 28 * * ** * ** * * * ** consensus_13889#0 CAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGAC 600 consensus_13889#1 CAGCAGGCGCACGCCGAGGCGCAGGGCCTCGTCGTCGCGAGGCAGCAGCTGGCCGCCGAC 153 consensus_13889#2 CATCTGGACCTCCTGTTCAATCAACATCCTACAGTGCAACAACAGCACGTAACTTTGGCT 88 ** * ** * * ** * ** ***** * * * consensus_13889#0 ACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCG 660 consensus_13889#1 ACGCAGAAGCTGAGCAAGGACCTGCAGAGGAACCTCGGCGAGGCGCAGCAGCTCCCCGCG 213 consensus_13889#2 CTGCCCAGGCTTTACCATCATATGCACATGCAC-------AGGAGCAAC--CTTCATATG 139 ** * *** * * * **** * * ** *** *** * ** * * consensus_13889#0 CTCGTGGCCGAGCGCGACGCCGCTAGGCAGGGGTATCAGCACCTCAGGGCTACGTATGAG 720 consensus_13889#1 CTCGTGGCCGAGCGCGACGCCGCTAGGCAGGAGTATCAGCACCTCAGGGCTACGTATGAG 273 consensus_13889#2 GACACGCACAGCTACCATCCTCATATGGATTAGCGCAAGCATCATTTCCATTTGCCCCAG 199 * * * * * * ** * * * **** * * * ** consensus_13889#0 TACGAAAGGAAACTCAGGATGGATCA--CTCCGAGTCGCTGCAG-GTGATGAAGAGGAAT 777 consensus_13889#1 TACGAAAGGAAACTCAGGATGGATCA--CTCCGAGTCGCTGCAG-GTGATGAAGAGGAAT 330 consensus_13889#2 CGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTATGGAGCTGGGCAAG 259 * * ** * * **** *** * ** * * **** ** * * * ** consensus_13889#0 TATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAAT 837 consensus_13889#1 TATGACACCATGGTCGCTGAGCTAGACAAGCTTCGTGCTGAGCTGATGAACACGGCTAAT 390 consensus_13889#2 CAGCAACTAATCCTGGCAGTGCTTACCAAGC---------ACCTCATGGACGTAAATAA- 309 * * ** * ** * *** ***** * ** *** ** *** consensus_13889#0 ATTGACAGAGGAGGCATGCCGTTTATCTGTTGTTCCATTTTTTTTACCACAATTTTTGGG 897 consensus_13889#1 ATTGACAGAGGAGG---------------------------------------------- 404 consensus_13889#2 ATCGGCAAAAGTTG---------------------------------------------- 323 ** * ** * * * consensus_13889#0 TAGCATATATAGAAACCACACCATGAGACATTTTCTATGTGTAGGTATGCTATACAATAC 957 consensus_13889#1 ---------------------------------------------TATGCTATACAATAC 419 consensus_13889#2 ---------------------------------------------TCTACTGATGGAT-- 336 * * ** ** consensus_13889#0 TAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGA 1017 consensus_13889#1 TAATACTGCTCAAAAGGATGATGGCGCGCCTAGTCTTCCTGTTGGACAAATTGCTTATGA 479 consensus_13889#2 TGTTATTGGCAAAAGAGACAATGCGCTGCTTTGTACACCAGA-GTTCAGTTTCCTTTCCA 395 * ** ** *** ** *** ** * ** ** * * ** ** *** * consensus_13889#0 TAGTGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAG 1077 consensus_13889#1 TAGCGGTTATGGAGCTGCGCAGGGAAGGACACCACCTGCTGGACTGGGAGACTCTTTAAG 539 consensus_13889#2 CAGC---TACCAAATCTTGTCGTTTAA-----------CTGATATGAGGTGATTCCTGAA 441 ** ** * * * * *** ** * * * * consensus_13889#0 CGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTA 1137 consensus_13889#1 CGGAAACCCAGCTGGCACAGCTCCTCGGACTGGATTTGATCCATCAAGAGGCAATATGTA 599 consensus_13889#2 TATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTGTAAAGTGTAAACTTGT 501 * * * * **** * *** ** * * ** * ** * consensus_13889#0 TGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAG 1197 consensus_13889#1 TGACGCTTCTCGTATTGCTAGCTTCAGTTCTTCAAAAGCTGGAGGACATGATGCATCAAG 659 consensus_13889#2 CGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAGG---TTAGGCAACCCA 558 * ** * * * *** ** * * * ** ** *** * * *** * consensus_13889#0 GGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGC 1257 consensus_13889#1 GGGTGCCGCAGGCTACAATTCTTTGAAAGGTGCTGGATATGATCCTTCTAAAGCACCTGC 719 consensus_13889#2 TGG------AAGCATGAATTC--TGACAAGAGCTGTAACTGTTGATTCTTATTTGATT-- 608 ** * ** ***** *** * * **** * ** * **** * * consensus_13889#0 ACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATC 1317 consensus_13889#1 ACTTGGAGGACAGGCAACAGCTGCAGCTGCTCATGGGAGTAGTGCTGATTACTATGGATC 779 consensus_13889#2 -TGTCAAAGTTAGTCGATTGTTT--GTTAGTTCAAACTCAAATGCTGCATG-TATGATAT 664 * * * ** * * * * * * * * ***** * **** consensus_13889#0 AAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGC---TGCATCCGCTTATGGATC 1374 consensus_13889#1 AAATCAGGCAACACCACCTTCATATGCTTGGGGACAAGC---TGCATCCGCTTATGGATC 836 consensus_13889#2 GAGATATACACTGCTAGTTCTGGGAGGTTAATAATAGGCCCGTGCTGGAGATTCTCAATG 724 * * ** * * * * ** * * ** *** * ** * ** consensus_13889#0 TGCACAAGTGCCACAGTCACATGCATCTGGACCTCCTGTTCAATCAACATCCTACAGTGC 1434 consensus_13889#1 TGCACAAGTGCCACAGTC------------------------------------------ 854 consensus_13889#2 TTTAGGGGCCTTAAAAG------------------------------------------- 741 * * * * * consensus_13889#0 AACAACAGCACGTAACTTTGGCTCTGCCCAGGCTTTACCATCATATGCACATGCACAGGA 1494 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 GCAACCTTCATATGGACACGCACAGCTACCATCCTCGTATGGATTAGCGCAAGCATCATT 1554 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 TCCATTTGCCCCAGCGCAAGGGGTGTCACCCTATGGGTCAGGTGCACAGCCTCCGCAGTA 1614 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 TGGAGCTGGGCAAGCAGCAACTAATCCTGGCAGTGCTTACCAAGCACCTCATGGACGTAA 1674 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 ATAAATCGGCAAAAGTTGTCTACTGATGGATTGTTATTGGCAAAAGAGACAATGCGCTGC 1734 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 TTTGTACACCAGAGTTCAGTTTCCTTTCCACAGCTACCAAATCTTGTCGTTTAACTGATA 1794 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 TGAGGTGATTCCTGAATATAGTCTGGAGAAGTAATGCTCTGCAAGATGGGAATGCTTCTG 1854 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 TAAAGTGTAAACTTGTCGTCGGTGTTTTAACTGCCTTTTTTTATACCTTCAAGCCTCCAG 1914 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 GTTAGGCAACCCATGGAAGCATGAATTCTGACAAGAGCTGTAACTGTTGATTCTTATTTG 1974 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 ATTTGTCAAAGTTAGTCGATTGTTTGTTAGTTCAAACTCAAATGCTGCATGTATGATATG 2034 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 AGATATACACTGCTAGTTCTGGGAGGTTAATAATATGCCCGTGCTGGAGATTCTCAATGT 2094 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 TTATCATGCATGCATTCGTTCTGTTTATCCTGTAAATGCGCATGCCCAGGATGCATACAT 2154 consensus_13889#1 ------------------------------------------------------------ consensus_13889#2 ------------------------------------------------------------ consensus_13889#0 CCGACATT 2162 consensus_13889#1 -------- consensus_13889#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||