These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 2690 fasta sequence [TCTTGAGGTGACTGTGAACTCTGGTGGTGTAGTGTTCTTTGCTCTATTTAATTCTTCAAGTAATGTCTTACCAAAAGAAGCAGCTGCTGTTATAAAGTTCTCATCATCAAAGATGTCAACTCAGGCAGAACGGTTGGGTTATGAATTTGCTAGATTGCTTGGAGTTCAGACACCACAAGCTAGAGTGGTACACAATTCTAGCCTAGAGTGGCAGGATATTAGAAAGGCTGCAGAAAATGCACGATCAGTAGCAGTTTCAAATAGTGATGAGGTTGGTGAGATGACATGCTCAGAATTGTTGGAAGCTCTTGAGCTAAGCCGTTGTCTTCTTCTAATGAGTTATATTCATGGATCTCCCCTTCTTGAGAGTTCAAAGGCATTTAGTCCACGGGAAGCTGCTTGCGTTACTGCTTCATCATTGGGTAGGGTCTTGATGCTAGATCTGATACTCAGAAATGAGGACAGACTCCCATGCCGTCAGCTTGGTTGGCGTGGCAATCCTGCAAACCTGATGATTTCCGATAGACCTTCTGCACCCAGTGTGGACAGATTGGATGATTCCAAGTGCACTACAGAAAGTTCTATTCCAACGATTACTCAATTGGTGCAGAGTGACAAGCGGACTCACACTGCAAATGCAACCATAAATTCTCCAGAATTGGTGTCCATGTCACCAAAACCAGATGCATTGAAAAGTGTAAGAGGAAATGCTGATAGTTTGGATGGCCCTGTCCACATTGTAGCAATCGACACTGGAGTGCCACGTCGCCCCCCTGCAGGGAGACGGGTGAAAGATCATGAGCGTTATCCCAAAGTTGTGCAGCTTATGTTGAATAATTCAGATTACTCCTCGAATATATTGTATGAGATTTCTGGTGGTAAGCTAGGGACTCCAGGACCTGATGAAGCAATCGCTTTCACTGATTCTTGTTGTTCCATTTCTGATGAAGACAATACTGCTGCGATTCATGAATTCCGAGGGGCATTTCGTGCAGCTCTGAGGGATCTTGAGGGGTTCCATCTATTTCTTCTCCAGCTATACCAAAAACTAGATGGTGTTTTGCGAGTTTTCTTGTCCATAGTTACTAAAGGCTCTGAAGAATCCGACAACAATGATGCTACAGTTCCTGATTTTCCATCACCCGGTGCTAACTACAGTACTCCTTGCGCTCCTAGTAAGCAGCAGAATAGTGAATTGCACGGTGATTCTGAAATACTGAAATCAACGACAAAGCCTTCTTCTGCGGGATCCCGTGGAAGCTCAGACTCAGTATCTCCTCTGTCCAGGGAGAGTTGGAGTAATAAGTATTTCAAAGGGAGTGCAGAGGGTCCCCGAAGTTTAAGAATGACAATGAAGCTCCGTGATTTTTACAAGACTCCGAAGGTTGATCCTGAATTAGTCAAAGAAATAGAACAATGGAATGAGGCGCTTAAGTCTGATGTGATCAAATTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAATAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGATAGCCTT-GGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTTCATA-GGTGGGGCTCTGGCTGCAAGATCTAT-GTACACCCTTCAGCATCTGGGCATTACCCATAT-ACTAT-GTTTGTGTTCAAATG-AGATTGGTCAATCT-GATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTTTGAAGAAGCCTCAGATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACGAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAG-TTTTTTTTTTCTCTCTCGAGGATGCTAGTG-TTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAA-CCAGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCAAGAAATAATCAGCGCAGCAGTATCATTTTTGCGTTTGCCTGGTAATGGCGCATGAATAAAAAAAAGATGTAATTTGCTCGGTTTGAAAAGTTGACGGTGAAAAACACCGGATTTTAGCTCACCGGTGAAGAGCACATTCATAAGGAAAAATGTACACTACGTATGAGTTCAAAAAAAA] [+] EMBL AK103288 [TCTTGAGGTGACTGTGAACTCTGGTGGTGTAGTGTTCTTTGCTCTATTTAATTCTTCAAGTAATGTCTTACCAAAAGAAGCAGCTGCTGTTATAAAGTTCTCATCATCAAAGATGTCAACTCAGGCAGAACGGTTGGGTTATGAATTTGCTAGATTGCTTGGAGTTCAGACACCACAAGCTAGAGTGGTACACAATTCTAGCCTAGAGTGGCAGGATATTAGAAAGGCTGCAGAAAATGCACGATCAGTAGCAGTTTCAAATAGTGATGAGGTTGGTGAGATGACATGCTCAGAATTGTTGGAAGCTCTTGAGCTAAGCCGTTGTCTTCTTCTAATGAGTTATATTCATGGATCTCCCCTTCTTGAGAGTTCAAAGGCATTTAGTCCACGGGAAGCTGCTTGCGTTACTGCTTCATCATTGGGTAGGGTCTTGATGCTAGATCTGATACTCAGAAATGAGGACAGACTCCCATGCCGTCAGCTTGGTTGGCGTGGCAATCCTGCAAACCTGATGATTTCCGATAGACCTTCTGCACCCAGTGTGGACAGATTGGATGATTCCAAGTGCACTACAGAAAGTTCTATTCCAACGATTACTCAATTGGTGCAGAGTGACAAGCGGACTCACACTGCAAATGCAACCATAAATTCTCCAGAATTGGTGTCCATGTCACCAAAACCAGATGCATTGAAAAGTGTAAGAGGAAATGCTGATAGTTTGGATGGCCCTGTCCACATTGTAGCAATCGACACTGGAGTGCCACGTCGCCCCCCTGCAGGGAGACGGGTGAAAGATCATGAGCGTTATCCCAAAGTTGTGCAGCTTATGTTGAATAATTCAGATTACTCCTCGAATATATTGTATGAGATTTCTGGTGGTAAGCTAGGGACTCCAGGACCTGATGAAGCAATCGCTTTCACTGATTCTTGTTGTTCCATTTCTGATGAAGACAATACTGCTGCGATTCATGAATTCCGAGGGGCATTTCGTGCAGCTCTGAGGGATCTTGAGGGGTTCCATCTATTTCTTCTCCAGCTATACCAAAAACTAGATGGTGTTTTGCGAGTTTTCTTGTCCATAGTTACTAAAGGCTCTGAAGAATCCGACAACAATGATGCTACAGTTCCTGATTTTCCATCACCCGGTGCTAACTACAGTACTCCTTGCGCTCCTAGTAAGCAGCAGAATAGTGAATTGCACGGTGATTCTGAAATACTGAAATCAACGACAAAGCCTTCTTCTGCGGGATCCCGTGGAAGCTCAGACTCAGTATCTCCTCTGTCCAGGGAGAGTTGGAGTAATAAGTATTTCAAAGGGAGTGCAGAGGGTCCCCGAAGTTTAAGAATGACAATGAAGCTCCGTGATTTTTACAAGACTCCGAAGGTTGATCCTGAATTAGTCAAAGAAATAGAACAATGGAATGAGGCGCTTAAGTCTGATGTGATCAATTTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAATAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGATAGCCTT GGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTTCATA GGTGGGGCTCTGGCTGCAAGATCTAT GTACACCCTTCAGCATCTGGGCATTACCCATAT ACTAT GTTTGTGTTCAAATG AGATTGGTCAATCT GATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTTTGAAGAAGCCTCAGATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACGAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAG TTTTTTTTTTCTCTCTCGAGGATGCTAGTG TTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAA CCAGTTTATTAGCAGGAGAACGTTTAGGTT ] [+] EMBL CB649755 [TCTTGAGGTGACTGTGAACTCTGGTGGTGTAGTGTTCTTTGCTCTATTTAATTCTTCAAGTAATGTCTTACCAAAAGAAGCAGCTGCTGTTATAAAGTTCTCATCATCAAAGATGTCAACTCAGGCAGAACGGTTGGGTTATGAATTTGCTAGATTGCTTGGAGTTCAGACACCACAAGCTAGAGTGGTACACAATTCTAGCCTAGAGTGGCAGGATATTAGAAAGGCTGCAGAAAATGCACGATCAGTAGCAGTTTCAAATAGTGATGAGGTTGGTGAGATGACATGCTCAGAATTGTTGGAAGCTCTTGAGCTAAGCCGTTGTCTTCTTCTAATGAGTTATATTCATGGATCTCCCCTTCTTGAGAGTTCAAAGGCATTTAGTCCACGGGAAGCTGCTTGCGTTACTGCTTCATCATTGGGTAGGGTCTTGATGCTAGATCTGATACTCAGAAATGAGGACAGACTCCCATGCCGTCAGCTTGGTTGGCGTGGCAATCCTGCAAACCTGATGATTTCCGATAGACCTTCTGCACCCAGTGTGGACAGATTGGATGATTCCCAGTGCACTACAGAAAGTTCTATTCCAACGATTACTCAATTGGTGCAGAGTGACAAGCGGACTCACACTGCAAATGCAAC ] [+] EMBL CA767125 [ TTATTCCTCGAATATATTGTATGAGATTTCTGGTGGTAAGCTAGGGACTCCAGGACCTGATGAAGCAATCGCTTTCACTGATTCTTGTTGTTCCATTTCTGATGAAGACAATACTGCTGCGATTCATGAATTCCGAGGGGCATTTCGTGCAGCTCTGAGGGATCTTGAGGGGTTCCATCTATTTCTTCTCCAGCTATACCAAAAACTAGATGGTGTTTTGCGAGTTTTCTTGTCCATAGTTACTAAAGGCTCTGAAGAATCCGACAACAATGATGCTACAGTTCCTGATTTTCCATCACCCGGTGCTAACTACAGTACTCCTTGCGCTCCTAGTAAGCAGCAGAATAGTGAATTGCACGGTGATTCTGAAATACTGAAATCAACGACAAAGCCTTCTTCTGCGGGATCCCGTGGAAGCTCAGACTCAGTATCTCCTCTGTCCAGGGAGAGTTGGAGTAATAAGTATTTCAAAGGGAGTGCAGAGGGTCCCCGAAGTTTAAGAATGACAATGAAGCTCCGTGATTTTTACAAGACTCCGAAGGTTGATCCTGAATTAGTCAAAGAAATAGAACAATGGAATGAGGCGCTTAAGTCTGATGTGATCAAATTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAATAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGNAAGGATAGCCTTGGGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGGTATCAACAACTTGNTCATAGGGGGGGGCTCTGGCTGCAAGATCTAT GTACACCCTTCAGCATCTGGGCATTACCCATAT ACTATGGTTGGGGGTCAAAGGAAAATGGGNCAATCT GA ] [+] EMBL AK062171 [ TGCAGAGGGTCCCCGAAGTTTAAGAATGACAATGAAGCTCCGTGATTTTTACAAGACTCCGAAGGTTGATCCTGAATTAGTCAAAGAAATAGAACAATGGAATGAGGCGCTTAAGTCTGATGTGATCAAATTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAATAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGATAGCCTT GGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTTCATA GGTGGGGCTCTGGCTGCAAGATCTAT GTACACCCTTCAGCATCTGGGCATTACCCATAT ACTAT GTTTGTGTTCAAATG AGATTGGTCAATCT GATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTTTGAAGAAGCCTCAGATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACGAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAG TTTTTTTTTTCTCTCTCGAGGATGCTAGTG TTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAA CCAGTTTATTAGCAGGAGAACGTT ] [+] EMBL D43429 [ TGATGTGATCAAATTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAATAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGATAGCCTT GGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTTCATA GGTGGGGCTCTGGCTGCAAGATCTAT GTACACCCTTCAGCATCTGGGCATTACCCATAT ACTAT GTTTGTGTTCAAATG AGATTGGTCAATCTNGATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGAT ] [+] EMBL D43308 [ TGATGTGATCAAATTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAATAACATGGTAGCTGNTGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGATAGCCTT GGTCTCTGNCGCTGCAAATACCGAGCGACCTNCTCTTNTTATCAACAACTTGTTCATA GGTGGGGCTCTGGCTGCAAGATCTATGGTACACCCNTCAGC ] [-] EMBL CB631877 [ GGCAATGAGAATAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGATAGCCTT GGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTTCATA GGTGGGGCTCTGGCTGCAAGATCTAT GTACACCCTTCAGCATCTGGGCATTACCCATAT ACTAT GTTTGTGTTCAAATG AGATTGGTCAATCT GATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTTTGAAGAAGCCTCAGATTACATCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACTAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAG TAATTGTT ] [+] EMBL D43491 [ GCCTT GGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTTCATA GGTGGGGCTCTGGCTGCAAGATCTAT GTACACCCTTCAGCATCTGGGCATTNCCNATATAACTAT GTTTGTTTTCAAATG AGATTGGTCAATCT GATTCCCAATTTCCCGATCTTTTTGAATACANGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCCTTTTt ] [-] EMBL CB669969 [ TAT ACTAT GTTTGTGTTCAAATG AGATTGGTCAATCT GATTCCCAATTTCCCGATCTTTTTGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTTTGAAGAAGCCTCAGATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACGAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAG TTTTTTTTTTCTCTCTCGAGGATGCTAGTG TTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAACCCAGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAAAAAAAAGA ] [-] EMBL CB649756 [ ATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTGCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGGCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAATGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGGACTGAGCACGAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAG TTTTTTTTTTCTCTCTCGAGGATGCTAGTG TTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAA CCAGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCAAGAAATAATCAGCGCAGCAGTATCATTTTTGCGTTTGCCTGGTAATGGCGCATGAATAAAAAAAAGA ] [+] EMBL BI808744 [ AATGACGGTTTC CAAA GCTCTGCTAGCGCTTGACAGGAA CTGCATGGAAAGGTGTCTATGGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCCATCTGCAGCAAGAACGTCGGACTGAGCACTAGCTCACTC AACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCA CCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAGTTTTTTTTTTTCTCTCTCGAGGATGCTAGTG TTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATAC AGGAAATGTTCACTTTTAACTGTATACAA CCAGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCCAGAAATAATCAGCGCAGCAGTAaaaa ] [+] EMBL BI810451 [ aCCGCGGTGGGA CCTGACCCCTTCTCAGAAGCTTACCAAGGCGTTC CTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAGTTTTTTTTTTTCTCTCTCGAGGATGCTAGTGTTTGTGCCAGTGTGGTGATGTGCACGGTACACGTTTTC AACCGATGTAATTTA CGGTAGATGTATCAA CAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAA CCAGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCAAGAAATAATCAGCGCA CAGTATCATTTTTGCGTTTGCCTGGTAATGGCGCATGAATAAGAGAAGGATGTAATTTGCTCGGTTTGAAAAGTTGACGGTGAAAAACACCGGATTTTAGCTCACCGGTGAAGAGCACATTCATAAGGAAAAATGTACACTACGTATGAGTTCAAAAAAAA] consensusID : consensus_13891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 618 fasta sequence [TAGATCATGTGGACCCCAAGTTTCTTGTCCATCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTAACTGATGCTCAGAAAGGCCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGCCACACCGAATGACGGTTTCCAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGCAGCACAAGCGACCTGAGATGAAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAGTTTTTTTTTTTCTCTCTCGAGGATGCTAGTGTTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACCAGGAAATGTTCACTTTTAACTGTATACAACCGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCAGAAATAATCAGCGCAGCAGTAAAAAAA] [+] EMBL BI800263 [TAGATCATGTGGACCCCAAGTTTCTTGTCCATCTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTAACTGATGCTCAGAAAGGCCCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGCCACACCGAATGACGGTTTCCAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTATGGATTGCAGCACAAGCGACCTGAGATGAAGGTAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAGCCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAGTTTTTTTTTTTCTCTCTCGAGGATGCTAGTGTTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAACCGATGTAATTTAGCGGTAGATGTATCAAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACCAGGAAATGTTCACTTTTAACTGTATACAACCGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCAGAAATAATCAGCGCAGCAGTAAAAAAA] consensusID : consensus_13891#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 353 fasta sequence [GCAGGANCCGGTTCGAGCAGAATCGATCCAGTCNCTCCGGATNAGCCGCGGTGNGAGCCTGAGCCCTTCTCANAAGCTTACCAAGGCGTNCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAGTTTNGNTTTTTCTCTCTCGAGGATGCTAGTGTTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTNATTTAGCGGTAGATGTNTCAAGCAGACCGAACTTTAGGTGTGGACAGAATAAGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAACCAGTTTATTAGCAGGAGAACGTTTAGGTTTTNTTTTTCCAAGAAATAATCAGCGC] [+] EMBL AA753058 [GCAGGANCCGGTTCGAGCAGAATCGATCCAGTCNCTCCGGATNAGCCGCGGTGNGAGCCTGAGCCCTTCTCANAAGCTTACCAAGGCGTNCGCTGATGAGCTCAGCTTCTGAATCTGTTCTTAGTAGTTTNGNTTTTTCTCTCTCGAGGATGCTAGTGTTGTGGCAGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTNATTTAGCGGTAGATGTNTCAAGCAGACCGAACTTTAGGTGTGGACAGAATAAGTGTGATACAAGGAAATGTTCACTTTTAACTGTATACAACCAGTTTATTAGCAGGAGAACGTTTAGGTTTTNTTTTTCCAAGAAATAATCAGCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13891#0 TCTTGAGGTGACTGTGAACTCTGGTGGTGTAGTGTTCTTTGCTCTATTTAATTCTTCAAG 60 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TAATGTCTTACCAAAAGAAGCAGCTGCTGTTATAAAGTTCTCATCATCAAAGATGTCAAC 120 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TCAGGCAGAACGGTTGGGTTATGAATTTGCTAGATTGCTTGGAGTTCAGACACCACAAGC 180 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TAGAGTGGTACACAATTCTAGCCTAGAGTGGCAGGATATTAGAAAGGCTGCAGAAAATGC 240 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 ACGATCAGTAGCAGTTTCAAATAGTGATGAGGTTGGTGAGATGACATGCTCAGAATTGTT 300 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GGAAGCTCTTGAGCTAAGCCGTTGTCTTCTTCTAATGAGTTATATTCATGGATCTCCCCT 360 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TCTTGAGAGTTCAAAGGCATTTAGTCCACGGGAAGCTGCTTGCGTTACTGCTTCATCATT 420 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GGGTAGGGTCTTGATGCTAGATCTGATACTCAGAAATGAGGACAGACTCCCATGCCGTCA 480 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GCTTGGTTGGCGTGGCAATCCTGCAAACCTGATGATTTCCGATAGACCTTCTGCACCCAG 540 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGTGGACAGATTGGATGATTCCAAGTGCACTACAGAAAGTTCTATTCCAACGATTACTCA 600 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 ATTGGTGCAGAGTGACAAGCGGACTCACACTGCAAATGCAACCATAAATTCTCCAGAATT 660 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GGTGTCCATGTCACCAAAACCAGATGCATTGAAAAGTGTAAGAGGAAATGCTGATAGTTT 720 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GGATGGCCCTGTCCACATTGTAGCAATCGACACTGGAGTGCCACGTCGCCCCCCTGCAGG 780 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GAGACGGGTGAAAGATCATGAGCGTTATCCCAAAGTTGTGCAGCTTATGTTGAATAATTC 840 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 AGATTACTCCTCGAATATATTGTATGAGATTTCTGGTGGTAAGCTAGGGACTCCAGGACC 900 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGATGAAGCAATCGCTTTCACTGATTCTTGTTGTTCCATTTCTGATGAAGACAATACTGC 960 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGCGATTCATGAATTCCGAGGGGCATTTCGTGCAGCTCTGAGGGATCTTGAGGGGTTCCA 1020 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TCTATTTCTTCTCCAGCTATACCAAAAACTAGATGGTGTTTTGCGAGTTTTCTTGTCCAT 1080 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 AGTTACTAAAGGCTCTGAAGAATCCGACAACAATGATGCTACAGTTCCTGATTTTCCATC 1140 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 ACCCGGTGCTAACTACAGTACTCCTTGCGCTCCTAGTAAGCAGCAGAATAGTGAATTGCA 1200 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 CGGTGATTCTGAAATACTGAAATCAACGACAAAGCCTTCTTCTGCGGGATCCCGTGGAAG 1260 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 CTCAGACTCAGTATCTCCTCTGTCCAGGGAGAGTTGGAGTAATAAGTATTTCAAAGGGAG 1320 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGCAGAGGGTCCCCGAAGTTTAAGAATGACAATGAAGCTCCGTGATTTTTACAAGACTCC 1380 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GAAGGTTGATCCTGAATTAGTCAAAGAAATAGAACAATGGAATGAGGCGCTTAAGTCTGA 1440 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGTGATCAAATTTTGCGAGGAGAACAATTTTCATTCTGGATTTTTTGATGGCAATGAGAA 1500 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TAACATGGTAGCTGATGCATATGAATTGAAGGTGCGTCTAGAACACATCATTGAAAGGAT 1560 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 AGCCTTGGTCTCTGACGCTGCAAATACCGAGCGACCTTCTCTTGTTATCAACAACTTGTT 1620 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 CATAGGTGGGGCTCTGGCTGCAAGATCTATGTACACCCTTCAGCATCTGGGCATTACCCA 1680 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TATACTATGTTTGTGTTCAAATGAGATTGGTCAATCTGATTCCCAATTTCCCGATCTTTT 1740 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGAATACAAGAACTTTTCAATTAGTGATGATGATGATGCAAATATCAGTGATCTTTTTGA 1800 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 AGAAGCCTCAGATTACTTCGATCATGTAGATCATGTTGGAGGCAAGGTTCTTGTTCATTG 1860 consensus_13891#1 --------------------------TAGATCATGTGGACCCCAAGTTTCTTGTCCAT-- 32 consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 CTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTACCTGATGCTCAGAAAGGG 1920 consensus_13891#1 CTTTGAAGGAAAAAGTCGGAGTGCCACAATTGTGCTTGCCTAACTGATGCTCAGAAAGGC 92 consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 CCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGGCACAACCGAA 1980 consensus_13891#1 CCTCACTCTTGCGAAAGCTTGGAACTTACTGAAGAAAGTGCATCGTCGGCCACA-CCGAA 151 consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TGACGGTTTCGCAAAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTAT 2040 consensus_13891#1 TGACGGTTTCC--AAGGCTCTGCTAGCGCTTGACAGGAAGCTGCATGGAAAGGTGTCTAT 209 consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 GGATTGGCAGCACAAGCGACCTGAGATGAAGGTGTGCCCAATCTGCAGCAAGAACGTCGG 2100 consensus_13891#1 GGATTG-CAGCACAAGCGACCTGAGATGAAGGT--------------------------- 241 consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 ACTGAGCACGAGCTCACTCAAACTGCATCTGCAGAAGGCTCACAAGCGGCTATCTGCAGG 2160 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 TAGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAG 2220 consensus_13891#1 -AGTGTGGACAGCGCCATGACCTTGGAGATTCAGAAGTCGATCCAGTCGCTCCGGATCAG 300 consensus_13891#2 --------------GCAGGANCCGGTTCGAGCAGAA-TCGATCCAGTCNCTCCGGATNAG 45 ** ** * * ***** *********** ******** ** consensus_13891#0 CCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAG 2280 consensus_13891#1 CCGCGGTGGGAGCCTGAGCCCTTCTCAGAAGCTTACCAAGGCGTTCGCTGATGAGCTCAG 360 consensus_13891#2 CCGCGGTGNGAGCCTGAGCCCTTCTCANAAGCTTACCAAGGCGTNCGCTGATGAGCTCAG 105 ******** ****************** **************** *************** consensus_13891#0 CTTCTGAATCTGTTCTTAGTAGTTTTTTTTTT-CTCTCTCGAGGATGCTAGTGTTGTGGC 2339 consensus_13891#1 CTTCTGAATCTGTTCTTAGTAGTTTTTTTTTTTCTCTCTCGAGGATGCTAGTGTTGTGGC 420 consensus_13891#2 CTTCTGAATCTGTTCTTAGTAGTTTNGNTTTTTCTCTCTCGAGGATGCTAGTGTTGTGGC 165 ************************* **** *************************** consensus_13891#0 AGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTAATTTAGCGGTAGATGTATC 2399 consensus_13891#1 AGTGTGGTGATGTGCACGGTACACGTTTTCAA-CCGATGTAATTTAGCGGTAGATGTATC 479 consensus_13891#2 AGTGTGGTGATGTGCACGGTACACGTTTTCAAACCGATGTNATTTAGCGGTAGATGTNTC 225 ******************************** ******* **************** ** consensus_13891#0 AAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACAAGGAAATGTTCACTTTT 2459 consensus_13891#1 AAGCAGACCGAACTTTAGGTGTGGACAGAATAGGTGTGATACCAGGAAATGTTCACTTTT 539 consensus_13891#2 AAGCAGACCGAACTTTAGGTGTGGACAGAATAAGTGTGATACAAGGAAATGTTCACTTTT 285 ******************************** ********* ***************** consensus_13891#0 AACTGTATACAACCAGTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCAAGAAATA 2519 consensus_13891#1 AACTGTATACAACC-GTTTATTAGCAGGAGAACGTTTAGGTTTTGTAATACCA-GAAATA 597 consensus_13891#2 AACTGTATACAACCAGTTTATTAGCAGGAGAACGTTTAGGTTTTNTTTTTCCAAGAAATA 345 ************** ***************************** * * *** ****** consensus_13891#0 ATCAGCGCAGCAGTATCATTTTTGCGTTTGCCTGGTAATGGCGCATGAATAAAAAAAAGA 2579 consensus_13891#1 ATCAGCGCAGCAGTAAAAAAA--------------------------------------- 618 consensus_13891#2 ATCAGCGC---------------------------------------------------- 353 ******** consensus_13891#0 TGTAATTTGCTCGGTTTGAAAAGTTGACGGTGAAAAACACCGGATTTTAGCTCACCGGTG 2639 consensus_13891#1 ------------------------------------------------------------ consensus_13891#2 ------------------------------------------------------------ consensus_13891#0 AAGAGCACATTCATAAGGAAAAATGTACACTACGTATGAGTTCAAAAAAAA 2690 consensus_13891#1 --------------------------------------------------- consensus_13891#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||