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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13895#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1684 fasta sequence
[ACTTGTCTTCATATGACGTGGCACTGACGTGGCAATTCGATCCGGAAAAATAATAAAACCCGTGGGACCCACATGTAAGTTGCACACATAAAATAATATAAAAATGGTGGGACCCACGTGGGTCCCACCTGTCATCGTCACTCCTCATTTCCTCCTCTTCTCTCGGCATCTTCATCTCTATCCCCTTTCCTCTATCTCTTCTCTCTACAGCAGCGCCACCACCACGGACTCCGCCGCCGCTCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGTGCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTTGCCACGGCGCGCAGCCTCAACGGCATCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGAGACCGCCGTGTTCCGCACCATGCTGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGCGTCTACTCCAACGTCGCGGGCTTCCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCATGTGCCAGCTCTACCCCAACACATCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGGCTTTGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGCACGACGACGGCGAGCTCGGCCTCAGACGCCACCCTGCGCGTCATCACCGAGCAGCTCGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCAAGGCCGACGCCATGTGGGTGGTGATTAGTTAAGTACTGCTTGGTCTTAATGATCGGTAACTGTATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGGGGGAGCGGGAAGCTGTCTCCGCCGCGGCCGCCTCGACGCCAAGGATCTCCGGGCGGCTCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTCCTTGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGGAGTCCATGGCCACGACGTCCTCCGTGGTGAACCCATCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCAGTGCACGGAGCATGCGGCAGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCAGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGTCCTCTCCCACCGGGGACTGAGAGAGAGGATATAGATAACTGA-----TAAGAGGGGAGAAATAGGGTGACAGGTGGGGTCCACGTGGGTCCCACCATTATTTTTATTATTTTGTATGTGCAACTGACATGTGGGTCCCACGGGTTTGTTATTTTTCCGGATCAAATTGCCA]
[-] EMBL AK109837 [ACTTGTCTTCATATGACGTGGCACTGACGTGGCAATTCGATCCGGAAAAATAATAAAACCCGTGGGACCCACATGTAAGTTGCACACATAAAATAATATAAAAATGGTGGGACCCACGTGGGTCCCACCTGTCATCGTCACTCCTCATTTCCTCCTCTTCTCTCGGCATCTTCATCTCTATCCCCTTTCCTCTATCTCTTCTCTCTACAGCAGCGCCACCACCACGGACTCCGCCGCCGCTCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGTGCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTTGCCACGGCGCGCAGCCTCAACGGCATCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGAGACCGCCGTGTTCCGCACCATGCTGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGCGTCTACTCCAACGTCGCGGGCTTCCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCATGTGCCAGCTCTACCCCAACACATCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGGCTTTGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGCACGACGACGGCGAGCTCGGCCTCAGACGCCACCCTGCGCGTCATCACCGAGCAGCTCGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCAAGGCCGACGCCATGTGGGTGGTGATTAGTTAAGTACTGCTTGGTCTTAATGATCGGTAACTGTATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGGGGGAGCGGGAAGCTGTCTCCGCCGCGGCCGCCTCGACGCCAAGGATCTCCGGGCGGCTCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTCCTTGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGGAGTCCATGGCCACGACGTCCTCCGTGGTGAACCCATCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCAGTGCACGGAG ATGCGGCAGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCAGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGTCCTCTCCCACCGGGGACT ]
[+] EMBL AK071158 [ TCGTCACTCCTCATTTCCTCCTCTTCTCTCGGCATCTTCATCTCTATCCCCTTTCCTCTATCTCTTCTCTCTACAGCAGCGCCACCACCACGGACTCCGCCGCCGCTCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGTGCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTTGCCACGGCGCGCAGCCTCAACGGCATCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGAGACCGCCGTGTTCCGCACCATGCTGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGCGTCTACTCCAACGTCGCGGGCTTCCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCATGTGCCAGCTCTACCCCAACACATCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGGCTTTGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGCACGACGACGGCGAGCTCGGCCTCAGACGCCACCCTGCGCGTCATCACCGAGCAGCTCGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCAAGGCCGACGCCATGTGGGTGGTGATTAGTTAAGTACTGCTTGGTCTTAATGATCGGTAACTGTATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGGGGGAGCGGGAAGCTGTCTCCGCCGCGGCCGCCTCGACGCCAAGGATCTCCGGGCGGCTCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTCCTTGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGGAGTCCATGGCCACGACGTCCTCCGTGGTGAACCCATCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCAGTGCACGGAGCATGCGGCAGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCAGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGTCCTCTCCCACCGGGGACTGAGAGAGAGGATATAGATAACTGA TAAGAGGGGAGAAATAGGGTGACAGGTGGGGTCCACGTGGGTCCCACCATTATTTTTATTATTTTGTATGTGCAACTGACATGTGGGTCCCACGGGTTTGTTATTTTTCCGGATCAAATTGCCA]
[+] EMBL AK062335 [ CGCCACCACCACGGACTCCGCCGCCGCTCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGTGTACAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGCGCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTCGCCACGGCGCGCAGCCTC ACGGCATCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGACACCGCGGCGTTCCGCACCATGCTGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGCGTCTACTCCAACGTCGCAGGCTTCCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCGTGTGCCAGCTCTACCCCAACACCTCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTTGCGCGGTAGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGCACGACGACGGCGAGCTCGGCCTCAGACGCCACCCTGCGCGTCACCACCGAGCAGCTCGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCAAGGCCGGCGCCATGTGGGTGGTGATTAGTTAAGTACTGCTTAGTCTTAATGATCGGTAACTGCATGTGTTGTAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCT ]
[+] EMBL AK106018 [ ACCACCACGGACTCCGCCGCCGCTCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGTGTACAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGCGCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTCGCCACGGCGCGCAGCCTC ACGGCATCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGACACCGCGGCGTTCCGCACCATGCTGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGCGTCTACTCCAACGTCGCAGGCTTCCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCGTGTGCCAGCTCTACCCCAACACCTCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTTGCGCGGTAGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGCACGACGACGGCGAGCTCGGCCTCAGACGCCACCCTGCGCGTCACCACCGAGCAGCTCGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCAAGGCCGGCGCCATGTGGGTGGTGATTAGTTAAGTACTGCTTAGTCTTAATGATCGGTAACTGCATGTGTTGTAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCCCTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGGTGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGCGGGAGCGGGAAGCCGTCTCCGCTGCAGCCGCCTCGACGCCAAGGATCTCTGGGCGGCACGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTCCTGGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGAAGTCCATGGCCACGGCGTCCTCCGTGGTGAATCAGTCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCAGTGCACGGAGCATGCGGCGGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCGGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGTCCTCTCCCACCAGGGACTGAGAGAGAGGATAGAGATAACAGATACAGTAAGAGGGGAGAAATAGGGTGACA T A TGGGGCCCATCATTATTTTTATTATTTTGTATGTGCAACTGATATGTGGGTCCCACGag ]
[+] EMBL CB674685 [ ACGGACTCCGCCGCCGCTCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGTGCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTTGCCACGGCGCGCAGCCTCAACGGCATCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGAGACCGCCGTGTTCCGCACCATGCTGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGCGTCTACTCCAACGTCGCGGGCTTCCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCATGTGCCAGCTCTACCCCAACACATCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGGCTTTGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGCGCGCCATCGAGCACGACGACGGCGAGCTCGGCCTCAGACGCCACCCTGCGCGTCATCACCGAGCAGCTCGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCAAGGCCGACGCCATGTGGGTGGTGATTAGTTAAGTACTGCTTGGTCTTAATGATCGGTAACTGTATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGGCCAAGCTCAC ]
[-] EMBL AK067691 [ TGTATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGGGGGAGCGGGAAGCTGTCTCCGCCGCGGCCGCCTCGACGCCAAGGATCTCCGGGCGGCTCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTTCTTGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGGAGTCCATGGCCACGACGTCCTCCGTGGTGAACCCATCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCAGTGCACGGAGCATGCGGCAGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCAGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGT ]
[-] EMBL CB674686 [ GTGGAAGTGTAGCTAGTTCGCCGCAAGCTCGTGTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACAAGGAGCCGCGGCGGCAGGGGGAGCGGGAAGCTGTCTCCGCCGCGGCCGCCTCGACGCCAAGGATCTCCGGGCGGCTCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTCGCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTCCTTGCCGTCGGCGTCTCAGCGAGGGCGACGATGTTGGGGGAGTCCATGGCCACGACGTCCTCCGTGGTGAACCCATCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGGCAGTGCACGGAGCATGCGGCAGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCCTTCAGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGTCCTCTCCCACCGGGGACTGAGAGAGAGGATATAGATAACTGA TAAGAGGGGAGAAATAGGGTGACAGGTGGGGTCCACGTGGGTCCCACCATTATTTTTATTATTTTGTATGTGC ]
consensusID : consensus_13895#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 997 fasta sequence
[CCAGCGCCACCACCACGGACTCCACCGCCACTCCCGCCACCGCCACATCCCTCGCCGGTGATCATGATGAGGTTCCACGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGACCACAGCGCGACCGGTCGATGCTCCGTGGCCTTGACGACCACGCCACGGCGCGCAGCCTCAACGGCGTCCGCGTGGCCGACGAGATCCTGCGGCTTGTCTCGGGCACCGCCGCGTTCCGCACCATGCTGTGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGGTCGTCTACTCCAACGTCGCGGGCTTCCTCGGTGGCGTCGGCTCGGCCATCCTCGTGGCGCGCGTGTGCCAGTTCTACCCCAACGCCTCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTCGCGCGGT-GGAAGTGGCCCAGCCCGGTGATGCTGTGCGCCATTGAGCACGACGACGGCGAGCTCGGCCTTAAACGCCACCCTGCGCGTCATCACCGAGCAGCTTGCCGTCGGCAACGCCATCTGCCAAGAGATCATCAAGGCCGGCGCCATGTGGGTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTCTTAGTGATCGACAACTGCATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCAAGTTAGTTCGCCGCAAGCTCATGTTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCACGTGTGTTTGTTGTTTCTCTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGATGAGGCAACTGTCGGTCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTTTTAGTGATATGCCCTATAGGCAATCATGGAGATGATTGTATCACATACTATGTTTACATATTTATCCGACATTGTTTCTTGAAATAGATAACTCCTTATTGGTTAATGAATATGTGAT]
[+] EMBL CB664861 [CCAGCGCCACCACCACGGACTCCACCGCCACTCCCGCCACCGCCACATCCCTCGCCGGTGATCATGATGAGGTTCCACGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGACCACAGCGCGACCGGTCGATGCTCCGTGGCCTTGACGACCACGCCACGGCGCGCAGCCTCAACGGCGTCCGCGTGGCCGACGAGATCCTGCGGCTTGTCTCGGGCACCGCCGCGTTCCGCACCATGCTGTGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGGTCGTCTACTCCAACGTCGCGGGCTTCCTCGGTGGCGTCGGCTCGGCCATCCTCGTGGCGCGCGTGTGCCAGTTCTACCCCAACGCCTCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTCGCGCGGT GGAAGTGGCCCAGCCCGGTGATGCTGTGCGCCATTGAGCACGACGACGGCGAGCTCGGCCTTAAACGCCACCCTGCGCGTCATCACCGAGCAGCTTGCCGTCGGCAACGCCATCTGCCAAGAGATCATCAAGGCCGGCGCCATGTGGGTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTCTTAGTGATCGACAACTGCATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCAAGTTAGTTCGCCGCAAGCTCATGTTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCACGTGTGTTTGTTGTTTCTCTG ]
[+] EMBL CF334251 [ AGCGCCACCACCACGGACTCCACCGCCACTCCCGCCACCGCCACATCCCTCGCCGGTGATCATGATGAGGTTCCACGGCGTGCAGGTGGATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGACCACAGCGCGACCGGTCGATGCTCCGTGGCCTTGACGACCACGCCACGGCGCGCAGCCTCAACGGCGTCCGCGTGGCCGACGAGATCCTGCGGCTTGTCTCGGGCACCGCCGCGTTCCGCACCATGCTGTGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGGTCGTCTACTCCAACGTCGCGGGCTTCCTCGGTGGCGTCGGCTCGGCCATCCTCGTGGCGCGCGTGTGCCAGTTCTACCCCAACGCCTCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTCGCGCGGTGGGAAGTGGCCCAGCCCGGTGATGCTGTGCGCC ]
[-] EMBL CB664862 [ GCGTGAAGCACTGGGCTAAGGCGCGGGGGTCGTCTACTCCAACGTCGCGGGCTTCCTCGGTGGCGTCGGCTCGGCCATCCTTGTGGCGCGCGTGTGCCAGTTATACCCCAACGCCTCCCCAGCATGCTGGTCCCGCGCTTTTTCCGCGTCTTCGCGCGGT GGAAGTGGCCCAGCCCGGTGATGCTGTGCGCCATTGAGCACGACGACGGCGAGCTCGGCCTTAAACGCCACCCTGCGTGTCATCACCGAGCAGCTTGCCGTCGGCAACGCCATCTGCCAAGAGATCATCAAGGCCGGCGCCATGTGGGTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTCTTAGTGATCGACAACTGCATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATAAGAGTGGAAGTGTAGCAAGTTAGTTCGCCGCAAGCTCATGTTTTGTCCACTGAAGTATTTGCATCACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTGTTGTTTTTTTGGGCCAAAGCTCACAGGGCTGGGTGGAGTCGCGGATGAGGCAACTGTCGGTCAGGGTGGAGGCGGACACGTCCGGGATGCTGCTTTTAGTGATATGCCCTATAGGCAATCATGGAGATGATTGTATCACATACTATGTTTACATATTTATCCGACATTGTTTCTTGAAATAGATAACTCCTTATTGGTTAATGAATATGTGAT]
consensusID : consensus_13895#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 404 fasta sequence
[CCTATGCGTATTTAGTACTGTTGTGTGCTAACAATAAGTCAAGTTGGAGAAAACTTGCTCGGATATGGTTTCTTGGTTGATG-CATGTGTAGGTGAGTNTTGATGCCTCGGGAGAGCGTTG-CCGGTGATGATCGGGAGTCAAATTGGGAGAAAATGATGTCCGTATGATCAAGATATCATGCGGGATACTTAGACTAAAGATCAATGCACGTGGTTAGTGAAGATTCCATATAGCATACGATTGAGATATTGTGTGCATATGGAATGCAGAGTCTGTTGATGATATTCCCTAGAGGCAATCATAGAGATGATTGTATCACATACTATGTTTACATATTTATCCGACATTGTTCCTTGAAATAGATAATTCGTTATTGGTTAAAAAAAAAAAGATTCTTTAAAAAA]
[+] EMBL C28152 [CCTATGCGTATTTAGTACTGTTGTGTGCTAACAATAAGTCAAGTTGGAGAAAACTTGCTCGGATATGGTTTCTTGGTTGATG CATGTGTAGGTGAGTNTTGATGCCTCGGGAGAGCGTTG CCGGTGATGATCGGGAGTCAAATTGGGAGAAAATGATGTCCGTATGATCAAGATATCATGCGGGATACTTAGACTAAAGATCAATGCACGTGGTTAGTGAAGATTCCATATAGCATACGATTGAGATATTGTGTGCATATGGAATGCAGAGTCTGTTG ]
[+] EMBL C97448 [ CTATGCGTATTTAGTACTGTTGTGTGCTAACAATAAGTCAAGTTGGAGAAAACTTGCTCGGATATGGTTTCTTGGTTGATGCCATGTGTAGGTGAGTGTTGATGCCTCGGGAGAGCGTTGCCCGGTGATGATCGGGAGTCAAATTGGGAGAAAATGATGTCCGTATGATCAAGATATCATGCGGGATACTTAGACTAAAGATCAATGCACGTGGTTAGTGAAGATTCCATATAGCATACGATTGAGATATTGTGTGCATATGGAATGCAGAGTCTGTTGATGATATTCCCTAGAGGCAATCATAGAGATGATTGTATCACATACTATGTTTACATATTTATCCGACATTGTTCCTTGAAATAGATAATTCGTTATTGGTTAAAAAAAAAAA ]
[-] EMBL CF337042 [ TGATGATCGGGAGTCAAATTGGGAGAAAATGATGTCCGTATGATCAAGATATCATGCGGGATACTTAGACTAAAGATCAATGCACGTGGTTAGTGAAGATTCCATATAGCATACGATTGGGATATTGTGTGCATATGGAATGCAGAGTCTGTTGATGATATTCCCTAGAGGCAATCATAGAGATGATTGTATCACATACTATGTTTACATATTTATCCGACATTGTTCCTTGAAATAGATAATTCGTTATTGGTTAATGAATATGTGATTCTTTAAAAAA]
consensusID : consensus_13895#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 351 fasta sequence
[TTACCCCAACGCCTCCCCAGCATGTTGCTCCCGCGTTTTTTCCGCGTTTTCGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGTGCGCCATTGAGCACGACGACGGCGAGCTCGCCTTTAAACGCCCCCCTGCGCGTCATCACCGAGCAGCTTGCCGTCGGCAACCCCATTTGCCAAGAGATCATCAAGGCCGGCCCCATGTGGGTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTTTTAGTGATCGACAACTGCGTGTGTTGCAGCTTGACTAACAAATCACTGAGTTTGAGAAATAAGAGTGGAAGTGTAGCAAGTTAGTTCCCCCCAAAAAAAAAAAAAAAAAA]
[-] EMBL CF334250 [TTACCCCAACGCCTCCCCAGCATGTTGCTCCCGCGTTTTTTCCGCGTTTTCGCGCGGTGGAAGTGGCCCAGCCCGGTGATGCTGTGCGCCATTGAGCACGACGACGGCGAGCTCGCCTTTAAACGCCCCCCTGCGCGTCATCACCGAGCAGCTTGCCGTCGGCAACCCCATTTGCCAAGAGATCATCAAGGCCGGCCCCATGTGGGTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTTTTAGTGATCGACAACTGCGTGTGTTGCAGCTTGACTAACAAATCACTGAGTTTGAGAAATAAGAGTGGAAGTGTAGCAAGTTAGTTCCCCCCAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13895#0 ACTTGTCTTCATATGACGTGGCACTGACGTGGCAATTCGATCCGGAAAAATAATAAAACC 60
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 CGTGGGACCCACATGTAAGTTGCACACATAAAATAATATAAAAATGGTGGGACCCACGTG 120
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 GGTCCCACCTGTCATCGTCACTCCTCATTTCCTCCTCTTCTCTCGGCATCTTCATCTCTA 180
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TCCCCTTTCCTCTATCTCTTCTCTCTACAGCAGCGCCACCACCACGGACTCCGCCGCCGC 240
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 -----------------------------CCAGCGCCACCACCACGGACTCCACCGCCAC 31
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TCCCGCCACCGCCACATCCCTTGCCGGTGATCCAGATGAGGTTCCGCGGCGTGCAGGTGG 300
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 TCCCGCCACCGCCACATCCCTCGCCGGTGATCATGATGAGGTTCCACGGCGTGCAGGTGG 91
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 ATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACCTGGAGTGGACCTCAGT 360
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ATCTCGTGTACGCCGGCGTGTGCCTCCCGTGGTGCCCGACAACC-----TGGACCACAGC 146
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 GCGACCGGTCGGTGCTCCGCGGCCTTGACGACCTTGCCACGGCGCGCAGCCTCAACGGCA 420
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 GCGACCGGTCGATGCTCCGTGGCCTTGACGACCACGCCACGGCGCGCAGCCTCAACGGCG 206
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TCCGCGTGGCCGACGAGATCCTGCGGCTTGTCCCGGAGACCGCCGTGTTCCGCACCATGC 480
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 TCCGCGTGGCCGACGAGATCCTGCGGCTTGTCTCGGGCACCGCCGCGTTCCGCACCATGC 266
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TGCGGTGCGTGAAGCACTGGGCTAAGGCGCGGGG--CGTCTACTCCAACGTCGCGGGCTT 538
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 TGTGGTGCGTGAAGCACTGGGCTAAGGCGCGGGGGTCGTCTACTCCAACGTCGCGGGCTT 326
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 CCTCGGCGGCATCGGCTGGGCTATCCTCGTGGCGCGCATGTGCCAGCTCTACCCCAACAC 598
consensus_13895#3 ------------------------------------------------TTACCCCAACGC 12
consensus_13895#1 CCTCGGTGGCGTCGGCTCGGCCATCCTCGTGGCGCGCGTGTGCCAGTTCTACCCCAACGC 386
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 ATCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGGCTTTGCGCGGTGGAAGTGGCCCAGC 658
consensus_13895#3 CTCCCCAGCATGTTGCTCCCGCGTTTTTTCCGCGTTTTCGCGCGGTGGAAGTGGCCCAGC 72
consensus_13895#1 CTCCCCAGCATGCTGCTCCCGCGCTTCTTCCGCGTCTTCGCGCGGTGGAAGTGGCCCAGC 446
consensus_13895#2 -----------------CCTATGCGTATTTAGTACTGTTGTGTGCTAACAATAAGTCAAG 43
** * * ** * * * * * * * * **
consensus_13895#0 CCGGTGATGCTGCGCGCCATCGAGCACGACGAC--GGCGAGCTCGGCCTCAGACGCCACC 716
consensus_13895#3 CCGGTGATGCTGTGCGCCATTGAGCACGACGAC--GGCGAGCTCGCCTTTAAACGCCCCC 130
consensus_13895#1 CCGGTGATGCTGTGCGCCATTGAGCACGACGAC--GGCGAGCTCGGCCTTAAACGCCACC 504
consensus_13895#2 TTGGAGAAAACTTGC----TCGGATATGGTTTCTTGGTTGATGCATGTGTAGGTGAGTNT 99
** ** ** * * * * * ** * * *
consensus_13895#0 CTGCGCGTCATCACCGAGCAGCT--CGCCGTCGGCGACGACGTCTGCCAGGAGATCGTCA 774
consensus_13895#3 CTGCGCGTCATCACCGAGCAGCT--TGCCGTCGGCAACCCCATTTGCCAAGAGATCATCA 188
consensus_13895#1 CTGCGCGTCATCACCGAGCAGCT--TGCCGTCGGCAACGCCATCTGCCAAGAGATCATCA 562
consensus_13895#2 TGATGCCTCGGGAGAGCGTTGCCGGTGATGATCGGGAGTCAAATTGGGAGAAAATGATGT 159
** ** * * * ** * * * * ** * * ** *
consensus_13895#0 AGGCCGACGCCATGTGG-GTGGTGATTAGTTAAGTA--------CTGCTTGGTCTTAATG 825
consensus_13895#3 AGGCCGGCCCCATGTGG-GTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTTTTAGTG 247
consensus_13895#1 AGGCCGGCGCCATGTGG-GTGGTGATTAGTTAAGTAAATAAGTACTGCTTGGTCTTAGTG 621
consensus_13895#2 CCGTATGATCAAGATATCATGCGGGATACTTAGACTAAAGATCAATGCACGTGGTTAGTG 219
* * * * ** * ** *** *** * *** **
consensus_13895#0 ATCGGTAACTGTATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATA-AGAG 884
consensus_13895#3 ATCGACAACTGCGTGTGTTGCAGCTTGACTAACAAATCACTGAGTTTGAGAAATA-AGAG 306
consensus_13895#1 ATCGACAACTGCATGTGTTGCAGCTTGACTAACAAATCACTGAGTCTGAGAAATA-AGAG 680
consensus_13895#2 AA----GATTCCATATAGCATA---CGATTGAGATATTG-TGTGCATATGGAATGCAGAG 271
* * * * * * ** * * * ** ** * * * *** ****
consensus_13895#0 TGGAAGTGTAGC----TAGTTCGCCGCAAGCTCGTGTTT-GTCCACTGAAGTATTTGCAT 939
consensus_13895#3 TGGAAGTGTAGC----AAGTTAGTTCCCCCCAAAAAAAA-AAAAAAAAAA---------- 351
consensus_13895#1 TGGAAGTGTAGCAAGTTAGTTCGCCGCAAGCTCATGTTTTGTCCACTGAAGTATTTGCAT 740
consensus_13895#2 TCTGTTGATGAT------ATTCCCTAGAGGCAATCATAGAGATGATTGTATCACATACTA 325
* * ** * * *
consensus_13895#0 CACTTGTGTATTCCTTCGTGCGTGTGTGACCTCGCGTGTGTTTTGTTGTTTCTCTGGGCC 999
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 CACTTGTGTATTCCTTCGTGCGTGTGTGACCTCACGTGTGTTT-GTTGTTTCTCTGGGCC 799
consensus_13895#2 TGTTTACATATTTATCCGACATTGTTCCTTGAAATAGATAATTCGTTATT------GGTT 379
consensus_13895#0 AAAGCTCACAGGGCTGGGTGGAGTCGCGGTTGAGGCAGCTGTCGGCCAGGGTGGAGGCGG 1059
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 AAAGCTCACAGGGCTGGGTGGAGTCGCGGATGAGGCAACTGTCGGTCAGGGTGGAGGCGG 859
consensus_13895#2 AAAAAAAAAAAGATTCTTTAAAAAA----------------------------------- 404
consensus_13895#0 ACACGTCCGGGATGCTGCTCTGCCACCTTCACCCGCAAGCGTACGCCACCGAGCACCACA 1119
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ACACGTCCGGGATGCTGCTTTTAGTGATATGCCCTATAGGCAATCATGGAGATGATTGTA 919
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 --AGGAGCCGCGGCGGCAGGGGGAGCGGGAAGCTGTCTCCGCCGCGGCCGCCTCGACGCC 1177
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 TCACATACTATGTTTACATATTTATCCGACATTGTTTCTTGAAATAGATAACTCCTTATT 979
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 AAGGATCTCCGGGCGGCTCGCCGGCGCTGCACGGATGGCCTTGAGGAGAGCAGCTAGCTC 1237
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 GGTTAATGAATATGTGAT------------------------------------------ 997
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 GCTCAGATGGCCTTGAGGTGGTCGGCAGCGGCGGCGGCGGCGATGTCCTTGCCGTCGGCG 1297
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TCTCAGCGAGGGCGACGATGTTGGGGGAGTCCATGGCCACGACGTCCTCCGTGGTGAACC 1357
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 CATCCTCGTTGCGGAGGAGCTCCTTGCTGCCGGCGGCGACCATCCCCGGCGTAGGCGTGG 1417
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 CAGTGCACGGAGCATGCGGCAGCGTCGACGGCGAGGTCCGCCTCCTGAGCGCCGTCAGCC 1477
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TTCAGCCTTCCCGAGCCTTGGCACGGCGGACCTCACGTGGTCCTCTCCCACCGGGGACTG 1537
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 AGAGAGAGGATATAGATAACTGATAAGAGGGGAGAAATAGGGTGACAGGTGGGGTCCACG 1597
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TGGGTCCCACCATTATTTTTATTATTTTGTATGTGCAACTGACATGTGGGTCCCACGGGT 1657
consensus_13895#3 ------------------------------------------------------------
consensus_13895#1 ------------------------------------------------------------
consensus_13895#2 ------------------------------------------------------------
consensus_13895#0 TTGTTATTTTTCCGGATCAAATTGCCA 1684
consensus_13895#3 ---------------------------
consensus_13895#1 ---------------------------
consensus_13895#2 ---------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||