These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13904#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1716 fasta sequence [CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGCGTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTAAACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC-GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG-CAGTT-ACAGAGACA-CTAAACA-ACGGG-TTCCG-AAC-TGGGGACA-TATATT-CTCCT-GGAACG-ACC-TTGG-TC-GGA-TGCAAG-CG-AATGGGA-GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT-AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC-AAC-AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA] [+] EMBL CB646289 [CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGCGTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTAAACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCAGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTATGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATAT ] [+] EMBL AU070347 [ TGTCAATCCAAGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGNGCNGCCGGC CGGTCGACGGC NGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACNGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATAGGCGGGCGCGGCGGTGGATNCGTACGGCGTGCCGCTCCCGGA GAGACGCTCGCGGCGGCGCAag ] [+] EMBL CB668391 [ AGCTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCGTTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCT ] [+] EMBL AK120254 [ CTAATCCCCTCATCAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAG GTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCC ] [+] EMBL CB677987 [ ctccCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCGGCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTACGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCCCAAGAGGCGCGGGAAGCTTTGCTCCGAAGACAAAGCGAAT ] [+] EMBL CB677850 [ AGTTACAACGNCACGCTCCTCCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGCCGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGC GGCGCGGCGGTGGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGCCGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCCAGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGCTGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGTCGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTTTGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGAGATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGAAGACAAAGCGAATGTGCTTGAGG ] [+] EMBL AK066745 [ ATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGG ] [-] EMBL CB646087 [ TGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTTTAGGCC AAC AATAATAAAATGG ] [-] EMBL CB677851 [ TGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTTGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGT ] [-] EMBL CB677988 [ CTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTTGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGT AACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAAAGGGGGTTGAGTATATATACTACCCCCATCTCCTGT ] [-] EMBL CB647307 [ TCAAGGTTTGGCGCCGGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCG CAGTT ACAGAGACA CTAAACA ACGGG TTCCG AAC TGGGGACA TATATT CTCCT GGAACG ACC TTGG TC GGA TGCAAG CG AATGGGA GAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTATCCTTGTGTCATTCTGT AACTTAGCGCAAGAGTTGCCTCTTTCCCCTTTTCTCTTATACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTGTAGGCC AAC AATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTATAAAGGTTGGTTGAGTATATATACTA ] [+] EMBL BI813467 [ gcGCCGCCAGTTAACAGAGACATCTTGTCATACGGGTTTCCGTATCGTGGGGACATTATATTGCTCCTGGGAACGAACCTTTGGTTCGGGATTGCAAGCCGAAATGGGAGGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCCCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGTGAACTTAGCGCATGAGTTGCCTCTTTCCCCTGTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCCAAACAAATAATAAAATGGGGTTGGTTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTATATATACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA] consensusID : consensus_13904#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 801 fasta sequence [AAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGGTTGGTTCCATCCTTAAAGAGA] [-] EMBL CB668392 [AAGCTTTGCTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTCATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAATGCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGACATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAGTGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGCTGGGCAGGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGTATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAAACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGCGAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAGAGCGCGGTTGCTCTAAACTCGTAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAGATTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATGTTTTTTGCCTGTCCTTGTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAATTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGGTTGGTTCCATCCTTAAAGAGA] consensusID : consensus_13904#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 499 fasta sequence [TNGTTCTGCGCCCGACATTGCTGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTATNGCTGCCATGCTATTGCGGTATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAGCCGCANTTACAGAGACACTAAACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGNTCGGATGCAAGCGAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATTAGCGCGGTTGCTCTAAACTCGNAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGATGGTCGAAAGNNCATCANATTATTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCTGATGACTTTTTGCCTGACCTTGTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTCCCTTTTCTCTTGTACCTTGAATTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCNACAATAATNAAAAGNGGTT] [+] EMBL CA766729 [TNGTTCTGCGCCCGACATTGCTGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTATNGCTGCCATGCTATTGCGGTATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAGCCGCANTTACAGAGACACTAAACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGNTCGGATGCAAGCGAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATTAGCGCGGTTGCTCTAAACTCGNAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGATGGTCGAAAGNNCATCANATTATTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCTGATGACTTTTTGCCTGACCTTGTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTCCCTTTTCTCTTGTACCTTGAATTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCNACAATAATNAAAAGNGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13904#0 CACAACCGCGCGGCAGCTCTGACTCCGGTGGTTTTCCCGAGAGCTGCCGGTTTTAAACGC 60 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 GTTTCAGCACCAACAAAGCAAGGGCAAAGCCCAAGCCCACCACCAAGTCTCCGACCACTA 120 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 AACTTGCAAAAAAAAAAAAAGAAACACAAAAAAAATGTCAATCCAAGCTAATCCCCTCAT 180 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CAAAACCCTAGCCTTGTCGCCTCGTCGGCGGATGGCGCCGCCGGCGCCGGCGACGGCGCG 240 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 GCGCCCGATGGCGGCCGTCCGCTGCTCCGCGGCGAAGAGGAGCTACAACGTCACGCTCCT 300 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CCCCGGTGACGGCATCGGCCCGGAGGTGGTCGCCGTCGCCAAGGACGTCCTCTCCCTCGC 360 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CGGCGCTCTCGAAGGCGTCGAGTTCCGCTTCCAGGAGAAGCTGATGGGCGGCGCGGCGGT 420 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 GGATGCGTACGGCGTGCCGCTCCCGGAGGAGACGCTCGCGGCGGCGCAGGCGTCGGACGC 480 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CGTCCTCCTCGGCGCCATAGGAGGGTATAAGTGGGATAACAATGAGAAGCACCTCAAGCC 540 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 AGAGACTGGGTTGCTCCAGATACGCGCTGGGCTTGGCGTCTTTGCTAATCTGAGGCCAGC 600 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 TGCAGTGTTGCCTCAGTTAGTAGATGCATCTACTTTGAAAAAAGAAGTAGCTGAAGGAGT 660 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CGACATCATGGTTGTTAGAGAGCTTACAGGAGGAATATACTTCGGCCAACCTAGGGGTTT 720 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 TGGAAAGAACGACAAAGGAGAAGACACTGGCTTCAACACTGAAGTATATTCAGCTTCTGA 780 consensus_13904#1 ------------------------------------------------------------ consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 GATTGATCGAATCACACGTGTTGCATTTGAGGTTGCTCGCAAGAGGCGCGGGAAGCTTTG 840 consensus_13904#1 ----------------------------------------------------AAGCTTTG 8 consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTC 900 consensus_13904#1 CTCAGTAGACAAAGCGAATGTGCTTGAGGCATCTATGCTTTGGAGAAAACGGGTGACTTC 68 consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 ATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAAT 960 consensus_13904#1 ATTAGCTTCTGAATTCCCTGACATTGAGCTGTCGCACATGTATGTTGATAATGCAGCAAT 128 consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 GCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGA 1020 consensus_13904#1 GCAGCTTATTAGGAATCCTAAGCAGTTTGACACAATTGTCACAAACAATATTTTTGGTGA 188 consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 CATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAG 1080 consensus_13904#1 CATATTGTCTGATGAAGCATCAATGCTTACTGGAAGCATTGGAATGCTCCCATCTGCCAG 248 consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 TGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGC 1140 consensus_13904#1 TGTTGGTGAATCGGGACCAGGTCTTTTTGAGCCTATTCATGGTTCTGCGCCCGACATTGC 308 consensus_13904#2 ---------------------------------------TNGTTCTGCGCCCGACATTGC 21 * ******************* consensus_13904#0 TGGGCA-GGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGT 1199 consensus_13904#1 TGGGCA-GGATAAGGCAAACCCATTAGCTACAATTCTTAGTGCTGCCATGCTATTGCGGT 367 consensus_13904#2 TGGGCAAGGATAAGGCACACCCATTANCTACAATTCTTATNGCTGCCATGCTATTGCGGT 81 ****** ********** ******** ************ ******************* consensus_13904#0 ATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAA 1259 consensus_13904#1 ATGGCCTTGGAGAAGAAAATGCTGCAAAGAGAGTTGAAGCCGCAGTTACAGAGACACTAA 427 consensus_13904#2 ATGGCCTTGGAGAANAAANTGCTGCAAATAGAGTTGAAGCCGCANTTACAGAGACACTAA 141 ************** *** ********* *************** *************** consensus_13904#0 ACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGC 1319 consensus_13904#1 ACAACGGGTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGGTCGGATGCAAGC 487 consensus_13904#2 ACAACGGNTTCCGAACTGGGGACATATATTCTCCTGGAACGACCTTGNTCGGATGCAAGC 201 ******* *************************************** ************ consensus_13904#0 GAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAG-AGCGCGGTTGCTCTAAACTCG 1378 consensus_13904#1 GAATGGGAGAGGAAGTCCTGAAGACTGTAGAGTCGCAG-AGCGCGGTTGCTCTAAACTCG 546 consensus_13904#2 GAATGGGANAGGAANNCCTGAANACTGTTGAGTCGCATTAGCGCGGTTGCTCTAAACTCG 261 ******** ***** ****** ***** ******** ********************* consensus_13904#0 TAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAG-A 1437 consensus_13904#1 TAGCTCTCAGTATTTCAGCTGTAGCCCTGTGATTGTGATGGTCGAAAGCACATCAGAG-A 605 consensus_13904#2 NAGCTCTCAGGNTNTNANNTGTAGNCCTGTGATTGTGATGGTCGAAAGNNCATCANATTA 321 ********* * * * ***** *********************** ***** * * consensus_13904#0 TTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATG-TTTTTTGCCTGTCCTT 1496 consensus_13904#1 TTGAGGCCGCCAAAGAATCACATTGATGCTGGACTTCCTGATG-TTTTTTGCCTGTCCTT 664 consensus_13904#2 TTGAGGCCGCCAAACAATCACATTGATGCTGGACTTCCTGATGACTTTTTGCCTGACCTT 381 ************** **************************** ********** **** consensus_13904#0 GTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAA 1556 consensus_13904#1 GTGTCATTCTGTAACTTAGGGCATGAGTTGCCTCTTTCCCCTTTTCTCTTGTACCTTGAA 724 consensus_13904#2 GTGTCATTCTGTAACTTAGCGCATGAGTTGCCTCTNTTCCCTTTTCTCTTGTACCTTGAA 441 ******************* *************** * ********************** consensus_13904#0 TTTTTTCTGTGGTGATGGTTGACTTAACTGTCTAGGCCAACAATAATAAAATGGGGTTGG 1616 consensus_13904#1 TTTTTTCTGTGGTGATGGTTGACTTATCTTTAAGGGCCAACAATAATAAAATGGGGTTGG 784 consensus_13904#2 TTCTNTCTGCGGTGATGGCTGACTTAACTGTCTANGCCNACAATAATNAAAAGNGGTT-- 499 ** * **** ******** ******* ** * *** ******** *** * **** consensus_13904#0 TTCCATATACCTAGCTGAACAAGAGGTTGGTTGTGTAACGTACTAACGTTGGTTGAGTAT 1676 consensus_13904#1 TTCCAT--CCTTAAAGAGA----------------------------------------- 801 consensus_13904#2 ------------------------------------------------------------ consensus_13904#0 ATATACTACCCCCATCTCCTGTTCATGTTGCTGTAAAAAA 1716 consensus_13904#1 ---------------------------------------- consensus_13904#2 ---------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||