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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13914#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2009 fasta sequence
[CTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAGTAAGTCCTTAGGCAAATATATGCATTATATAGTGTCTGAAATTTCACTTGGAGATCATCAAATTCCTGGCTGGGGCCTGGGAATAATGGTAGAGGTTCTTCTTTTCATTTGGCCAATTTCTAAATGACATAGTGTTGCCATACCCGCCCCCCCCCCCCCCCCAAAAAAAAAAAGTCATTGGCTGCTACTGGTCTTAGAACGACGCCTTTCTATATTATGGAACATTATGGAACATAATGTTTTGTGCTCTGCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGGTGTGCTGTTTGTTTCATAAAAGCTATTATTCTCATGACATTACTGTATATGCGTTGGACTTGAACTTCTTGTTATAACTTAAAACTTGTGTATAAGATAGGATTAGGTTTATTGGACACAAAAATTTTATAATGTTACTGTGAGACATTCTATAACCATCAGCACACAGTCGTAGATCAGACTGTGAAACTTGGGTATTGACCCAACCAGACAGGCTATTCCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGCTGGCAGTTTCCATCATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGTTTGAAACAACCACAAACACTTGGGTCAAGTCTTGAATAAACAAAGCAATAACATTTTCTTCTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATAGGAATACTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAATCTTTTCTGAGCTAATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTTGCAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT]
[+] EMBL AK073871 [CTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAGTAAGTCCTTAGGCAAATATATGCATTATATAGTGTCTGAAATTTCACTTGGAGATCATCAAATTCCTGGCTGGGGCCTGGGAATAATGGTAGAGGTTCTTCTTTTCATTTGGCCAATTTCTAAATGACATAGTGTTGCCATACCCGCCCCCCCCCCCCCCCCAAAAAAAAAAAGTCATTGGCTGCTACTGGTCTTAGAACGACGCCTTTCTATATTATGGAACATTATGGAACATAATGTTTTGTGCTCTGCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGGTGTGCTGTTTGTTTCATAAAAGCTATTATTCTCATGACATTACTGTATATGCGTTGGACTTGAACTTCTTGTTATAACTTAAAACTTGTGTATAAGATAGGATTAGGTTTATTGGACACAAAAATTTTATAATGTTACTGTGAGACATTCTATAACCATCAGCACACAGTCGTAGATCAGACTGTGAAACTTGGGTATTGACCCAACCAGACAGGCTATTCCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGCTGGCAGTTTCCATCATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGTTTGAAACAACCACAAACACTTGGGTCAAGTCTTGAATAAACAAAGCAATAACATTTTCTTCTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATAGGAATACTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAATCTTTTCTGAGCTAATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTTGCAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT]
consensusID : consensus_13914#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1236 fasta sequence
[CTCCACGAGACGGCTTGACTTTCTTCGTCTTCTCCTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT-GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT-GTCACTGTGGG-CGTGG-TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC-TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGTTTAAAAAAAAAGAAAAAAAAAAA]
[+] EMBL AK061384 [CTCCACGAGACGGCTTGACTTTCTTCGTCTTCTCCTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC TTTCTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGT ]
[+] EMBL AK104004 [ TCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT ]
[+] EMBL CB646682 [ CGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATA ]
[+] EMBL OSS14438A [ CGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAG GAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGNCACCCTCACCGCGGCCCGCAAGGTGGGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGA NATGGTCACTGTGGGCCGTGGTTTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTTGGCAAATCAGNTACTACTGATTACG ]
[+] EMBL CB632066 [ ACCTCGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGTGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAGCGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGC AGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAANAC ]
[+] EMBL CA756266 [ AGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCAT GTCACTGTGGG CGTGG TTGGGGGATCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCANAAGGNGTACATTCATAGAGTTCCGAAGTGGGATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACAT ]
[+] EMBL C93498 [ AGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCATCCGGGCTCTGTTGNTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGT GGTGACGCCGGANATGCTCCAGTTCATGAAGC ]
[-] EMBL CB646683 [ GCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGTTTAAAAAAAAAG ]
[-] EMBL CB632067 [ ACTACTGATTACGATTACTGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAGAGTTTGAAATCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTTTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTTTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTGTAGGTGTACA ]
[+] EMBL CF292176 [ ATATGTGTACACTTTGGTTCAAATAAATGAGAGCTGGCATTGTTTAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_13914#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 694 fasta sequence
[GCCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGANCGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU096611 [GCCACAAGAACGGCGAACTCATTGGAACTCAAAGTTTGAAATCCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTACATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAATGCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGANCGTGATGAGTTTGAAAAGTATGATAAGGTACATAACATTCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGTTTCAGATTATATGTGTACACTTTGGTTCAAATAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL CA923286 [ TCGGCCTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCGCCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAGGCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTGGGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTGGACATACAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCACGTCGAAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCCTTTTTTTTATACCATACAAGTGCTGCTTCT ]
consensusID : consensus_13914#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence
[GGAGAAAATTGGTAGTTCAAAGAAAGAAACGTGGATTGAGTTTTGAAAAAGTTATGATANAGGTACAATAACACTTCGCCCCTAAAATGGTCTCCACGTGCTTTCCGTTGAAAAGTTCGCCCANCCTTTGAACTTGGACAATGNTTCCTAATTTGGAGGCCAAGTATTAGTTTTGGATGGGTGTTCCCCACAGAGCGCTTGGCGCCAACAAANACTTGATGCTGTGGAAGTATTATCCTTGGAGGGATTTTCCAAAGAATATCAATTGTCTTTGTGGGCGCACACAAACCTTCACAAGGGTAGCGCCAATGGTATGGAGATATTTGGAGTCTGACCGGACAATGGGGACATNACAGTTGACCCAGTGCCTGGATGGATACACGCAGGACCAGTGCAGATCTGCTGCTTGCAATGTGCAGAAGTGGACCCTGGATTCCCCGCGCATTTTGATGTTAATGTGTGTAACAATGAGCATTCCCCTGCAACATGTGTGCCTGGTGATGTGCCCCTGGGTTGTGTGTGTAATAACCATACAAGTGCTGCTTCTTACAGAATGTACTTCCCGTATTCACAAGTTTCAGATTATATGTGTACACCTTNGGTTCAAATAAATGAGAGCTGCATTGTTTACCCAAAAAAAAAA]
[+] EMBL BM038461 [GGAGAAAATTGGTAGTTCAAAGAAAGAAACGTGGATTGAGTTTTGAAAAAGTTATGATANAGGTACAATAACACTTCGCCCCTAAAATGGTCTCCACGTGCTTTCCGTTGAAAAGTTCGCCCANCCTTTGAACTTGGACAATGNTTCCTAATTTGGAGGCCAAGTATTAGTTTTGGATGGGTGTTCCCCACAGAGCGCTTGGCGCCAACAAANACTTGATGCTGTGGAAGTATTATCCTTGGAGGGATTTTCCAAAGAATATCAATTGTCTTTGTGGGCGCACACAAACCTTCACAAGGGTAGCGCCAATGGTATGGAGATATTTGGAGTCTGACCGGACAATGGGGACATNACAGTTGACCCAGTGCCTGGATGGATACACGCAGGACCAGTGCAGATCTGCTGCTTGCAATGTGCAGAAGTGGACCCTGGATTCCCCGCGCATTTTGATGTTAATGTGTGTAACAATGAGCATTCCCCTGCAACATGTGTGCCTGGTGATGTGCCCCTGGGTTGTGTGTGTAATAACCATACAAGTGCTGCTTCTTACAGAATGTACTTCCCGTATTCACAAGTTTCAGATTATATGTGTACACCTTNGGTTCAAATAAATGAGAGCTGCATTGTTTACCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 CTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCTCGCGCCCGCGCCGCC 60
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 TATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAGGCGAAGCGAGGGAGC 120
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 GCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCGTCGCCGCACGCATCA 180
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 -----------------------------------------CTCCACGAGACGGCTTGAC 19
consensus_13914#0 TCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGCAGCAGGAGGAGGAGG 240
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 TTTCTTCGTCTTCTCCTCCTCCTCCGCTTCGCCTCCTCGCGCAGATCCCGACGCACACCT 79
consensus_13914#0 AGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGTGTCCTCGCGCTCTTC 300
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 CGCGCCCGCGCCGCCTATAAATTCCCCCGCCTCGCCGTTGCCGCCGCCGCGGGAAGCGAG 139
consensus_13914#0 GACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCGGAGATGCTCCAGTTC 360
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 GCGAAGCGAGGGAGCGCGTCTAGATCCGCACCGGCGAAACGACCCAAGCTGCCTTTCCCG 199
consensus_13914#0 ATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGATCTGATCTGGTGAAG 420
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 TCGCCGCACGCATCATCCGGGCTCTGTTGCTGCTGCTATACCGCGCCCGTTCGCTGTAGC 259
consensus_13914#0 ATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTACTGCTTCTCTGAAAAT 480
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 AGCAGGAGGAGGAGGAGGAGGAGCGGAGTGGTGGCGATGGCGGCGAGGAAGAATGCCGGT 319
consensus_13914#0 GGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAGTAAGTCCTTAGGCAAAT 540
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 GTCCTCGCGCTCTTCGACGTCGACGGCACCCTCACCGCGCCCCGCAAGGTGGTGACGCCG 379
consensus_13914#0 ATATGCATTATATAGTGTCTGAAATTTCACTTGGAGATCATCAAATTCCTGGCTGGGGCC 600
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 GAGATGCTCCAGTTCATGAAGCAGCTGCGCGAGCATGTCACTGTGGGCGTGGTTGGGGGA 439
consensus_13914#0 TGGGAATAATGGTAGAGGTTCTTCTTTTCATTTGGCCAATTTCTAAATGACATAGTGTTG 660
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 TCTGATCTGGTGAAGATTTCCGAACAACTCGGCAAATCAGTTACTACTGATTACGATTAC 499
consensus_13914#0 CCATACCCGCCCCCCCCCCCCCCCCAAAAAAAAAAAGTCATTGGCTGCTACTGGTCTTAG 720
consensus_13914#2 -------------------------GCCACAAGAACGGCGAACTCATTGGAACTCAAAGT 35
consensus_13914#3 ---------------------------GGAGAAAATTGGTAGTTCAAAGAAA---GAAAC 30
consensus_13914#1 TGCTTCTCTGAAAATGGCCTGGTCGCGCACAAGAACGGCGAACTCATTGGAACTCAAAGT 559
consensus_13914#0 AACGACGCCTTTCTATATTATGGAACATTATGGAACATAATGTTTTGTGCTCTGCAGAGT 780
** * * *
consensus_13914#2 TTGAAATCCGTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTA 95
consensus_13914#3 GTGGATTGAGTTT--TGAAAAAGTTATGATANAGGTAC--AATAACACTTCGCCCC-TAA 85
consensus_13914#1 TTGAAATC-GTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTA 618
consensus_13914#0 TTGAAATC-GTTTCTTGGAGATGATCAGCTAAAGGAATTTATTAACTTCACGCTTCATTA 839
** * * **** ** * * * * * ** *** * * **** *** * * *
consensus_13914#2 CATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAAT 155
consensus_13914#3 AATGGTCTCCACGTGCTTTCCGTTGAAAAG---TTCGCCCANC---CTTTGAACTTGGAC 139
consensus_13914#1 CATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAAT 678
consensus_13914#0 CATTGCTGACTTGGACATCCCAATCAAAAGGGGTACATTCATAGAGTTCCGAAGTGGAAT 899
** * * * * * ** * ***** * * ** * *** * * *
consensus_13914#2 GCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGANCGTGATGAGTTTGAAAA 215
consensus_13914#3 ----AATGNTTC-CTAATTTGGAG--------GCCAAGTA--------TTAGTTTTGGAT 178
consensus_13914#1 GCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAA 738
consensus_13914#0 GCTGAATGTGTCGCCCATAGGGAGAAATTGTAGTCAAGAAGAACGTGATGAGTTTGAAAA 959
**** ** * ** **** * **** * * ***** *
consensus_13914#2 GTATGATAAGGTACATAACATTCGGC-CTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCG 274
consensus_13914#3 GGGTGTTCCC-CACAGAGCGCTTGGCGCCAACAAANACTTGATGCT--GTGGAAGTATTA 235
consensus_13914#1 GTATGATAAGGTACATAACATTCGGC-CTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCG 797
consensus_13914#0 GTATGATAAGGTACATAACATTCGGC-CTAAAATGGTCTCAGTGCTTCGTGAAAAGTTCG 1018
* ** * *** * * * *** * ** * ** **** *** ** *
consensus_13914#2 CCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAG 334
consensus_13914#3 TCC--TTGGA---GGGATTTTCCAAAGAATATCAATT--GTCTTTGTGGGCGCACACAAA 288
consensus_13914#1 CCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAG 857
consensus_13914#0 CCCACTTGAACTTGACATTTTCTATTGGAGGGCAGATTAGTTTTGATGTGTTCCCACAAG 1078
** *** * * ****** * * * ** * ** ** ** * * *****
consensus_13914#2 GCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTG 394
consensus_13914#3 CCTTC-ACAAGGGTAGC-GCCAATGGTATG--GAGATATTTGGAGTCTGACCGGACAATG 344
consensus_13914#1 GCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTG 917
consensus_13914#0 GCTGGGACAAAACTTACTGCTTGAGATATCTTGAGGAATTTCAAGAAATCCATTTCTTTG 1138
** **** * * ** * *** *** **** ** * * **
consensus_13914#2 GGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTG 454
consensus_13914#3 GGGACA----TNACAGTTGACCCAGTGCCTG-GATGGATACACGCAGGACCAGTGCA--- 396
consensus_13914#1 GGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTG 977
consensus_13914#0 GGGACAAAACCTACAAGGGAGGCAATGATTATGAGATATTTGAGTCTGACCGGACAATTG 1198
****** *** ** ** ** * ** ** * **** * *
consensus_13914#2 GACATACAGTT-ACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCG 513
consensus_13914#3 GATCTGCTGCT-TGCAATGTGCAGAAGTGGACCCTGGATTCCCCGCGCATTTTGATGTTA 455
consensus_13914#1 GACATACAGTT-ACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCG 1036
consensus_13914#0 GACATACAGGTGTGCTGTTTGTTTCATAAAAGCTATTATTCTCATGACATTACTGT---- 1254
** * * * * * * * * * * *
consensus_13914#2 AAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTA 573
consensus_13914#3 ATGTGTGT--AACAATGAGCATTCC-CCTGCAACATGTGTGCCTGGTGATGTGCCCCTGG 512
consensus_13914#1 AAGTGACCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTA 1096
consensus_13914#0 ATATGCGTTGGAC-TTGAAC-TTCTTGTTATAAC--TTAAAACTTGTG-TATAAGATAGG 1309
* ** * * ** * * * * *
consensus_13914#2 TTTCCCTTTTTTTTATACCATA--CAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTAT 631
consensus_13914#3 GTTGTGTGTGTAATA-ACCATA--CAAGTGCTGCTTCTTACAGAATGTACTTC-CCGTAT 568
consensus_13914#1 TTTCCCTTTTTTTTATACCATA--CAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTAT 1154
consensus_13914#0 ATTAGGTTTATTGGACACAAAAATTTTATAATGTTACTGTGAGACATTCTATAACCATCA 1369
** * * * * ** * * * ** * ** *** * * ** *
consensus_13914#2 TCACA-AGTTTCAGATTATATGTGTACAC-TTTGGT-TCAAATAAAAAAAAA-------- 680
consensus_13914#3 TCACA-AGTTTCAGATTATATGTGTACACCTTNGGT-TCAAATAAATGAGAGCTG-CATT 625
consensus_13914#1 TCACA-AGTTTCAGATTATATGTGTACAC-TTTGGT-TCAAATAAATGAGAGCTGGCATT 1211
consensus_13914#0 GCACACAGTCGTAGATCAGAC-TGTGAAACTTGGGTATTGACCCAACCAGACAGGCTATT 1428
**** *** **** * * *** * ** *** * * ** * *
consensus_13914#2 ----AAAAAAAAAAAAAA------------------------------------------ 694
consensus_13914#3 GTTTACCCAAAAAAAAAA------------------------------------------ 643
consensus_13914#1 GTTTAAAAAAAAAGAAAAAAAAAAA----------------------------------- 1236
consensus_13914#0 --CCAATCAAGCAATACTGCACAGATCATGCAAATGAATGTTCAGTAGCAGTATACTTGC 1486
* ** * *
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 TGGCAGTTTCCATCATTAGAATTGACCAATTCAGGTTAATGTTCATGAATAAAATTCAGT 1546
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 TTGAAACAACCACAAACACTTGGGTCAAGTCTTGAATAAACAAAGCAATAACATTTTCTT 1606
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 CTGGAAATACTTCACAAGTTCCATTATGGTTGAGCTGTATCCTCTTACTAAATAGGAATA 1666
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 CTCTTGCAAGCTTCTCATATGTGGCTGAGTCTTGTTTGCCGAGGTTAAACTTGCTTTAAA 1726
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 TCTTTTCTGAGCTAATACATGATTGATGCCATCACCAAGCTGATTTCATCATTTATATTT 1786
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 GCAGTTACCAGTCCTGATGATACAGCAGAGCAGTGCAGATCTCTCTTCATGTCGAAGTGA 1846
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 CCTGATTACCGTGCATTTTATTTATTTTACATAGCATTCCTCACATTTCCTGTATTTCCC 1906
consensus_13914#2 ------------------------------------------------------------
consensus_13914#3 ------------------------------------------------------------
consensus_13914#1 ------------------------------------------------------------
consensus_13914#0 TTTTTTTTATACCATACAAGTGCTGCTTCTTACAGAATGTACTTCTCCGTATTCACAAGT 1966
consensus_13914#2 -------------------------------------------
consensus_13914#3 -------------------------------------------
consensus_13914#1 -------------------------------------------
consensus_13914#0 TTCAGATTATATGTGTACACTTTGGTTCAAATAAATGAGAGCT 2009
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||