cluster # 1393

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Oryza sativa
cluster # 1393 cluster # 1393 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_1393#0 length = 792 sequences # 1

consensus_1393#1 length = 659 sequences # 1

consensusID : consensus_1393#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 792
fasta sequence

                              [GACGAGACAAGGGGGAAGCCTATTGTGTCAGCTTTCATAGAGTTTCTGTATTATAATAGACCAAATCAGATTGATAAGGAGTAGGATGAAGGATAGGAATGCTTCTGCTGAGCCTGTGGTGAAGCCAGAATTATCACCATCAAGATTTGTGAAGGTTTTCATGCATGGGGAACCCTTTGGGAGGAAGGTCAATTTGGCTCTCCATAACAACTATGACTCTTTGTCCTTCACTTTAAAAAAATTGGGCAACAACTATTCCATGTCACCATTTGAACTTGAAGGCTTGGTGAACAAGGAAGAAGATGGTGCAATAGACAGCGACTTTGACCTCTTGTATGATGATATGGATGGTGTTCGTTACTTCCTTGGTGATGTCCCATGGGAGGTTTTCACCACTACAGTGAAAAAGATCTACATTGTCCCTGCAGAACAACAGAATGAAAATGATTATCAGGAGGAGGAAGAGGACAACGCGGCTGCTGCTGCTACTGCTGACGAAGATGGAGATGGAGCTGCTGCTGACGATGGCGTTGCTGCTGCAGCTGACGACGTTGACGATGTTGCTGGATACACGAGCAACGATGACCCAAGCTTCGACTGATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATCTCGTCCAATCTATCTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCATATATATGCTGCTACCATCATCCGTTGTTGCTACCCTTGTAAGAGACTAATGATGGTTTAATTAGCTTCTAAGTGCTGAAATGGCATCGGT]

[+] EMBL CA766113             [GACGAGACAAGGGGGAAGCCTATTGTGTCAGCTTTCATAGAGTTTCTGTATTATAATAGACCAAATCAGATTGATAAGGAGTAGGATGAAGGATAGGAATGCTTCTGCTGAGCCTGTGGTGAAGCCAGAATTATCACCATCAAGATTTGTGAAGGTTTTCATGCATGGGGAACCCTTTGGGAGGAAGGTCAATTTGGCTCTCCATAACAACTATGACTCTTTGTCCTTCACTTTAAAAAAATTGGGCAACAACTATTCCATGTCACCATTTGAACTTGAAGGCTTGGTGAACAAGGAAGAAGATGGTGCAATAGACAGCGACTTTGACCTCTTGTATGATGATATGGATGGTGTTCGTTACTTCCTTGGTGATGTCCCATGGGAGGTTTTCACCACTACAGTGAAAAAGATCTACATTGTCCCTGCAGAACAACAGAATGAAAATGATTATCAGGAGGAGGAAGAGGACAACGCGGCTGCTGCTGCTACTGCTGACGAAGATGGAGATGGAGCTGCTGCTGACGATGGCGTTGCTGCTGCAGCTGACGACGTTGACGATGTTGCTGGATACACGAGCAACGATGACCCAAGCTTCGACTGATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATCTCGTCCAATCTATCTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCATATATATGCTGCTACCATCATCCGTTGTTGCTACCCTTGTAAGAGACTAATGATGGTTTAATTAGCTTCTAAGTGCTGAAATGGCATCGGT]




>consensus_1393#0
GACGAGACAAGGGGGAAGCCTATTGTGTCAGCTTTCATAGAGTTTCTGTATTATAATAGA
CCAAATCAGATTGATAAGGAGTAGGATGAAGGATAGGAATGCTTCTGCTGAGCCTGTGGT
GAAGCCAGAATTATCACCATCAAGATTTGTGAAGGTTTTCATGCATGGGGAACCCTTTGG
GAGGAAGGTCAATTTGGCTCTCCATAACAACTATGACTCTTTGTCCTTCACTTTAAAAAA
ATTGGGCAACAACTATTCCATGTCACCATTTGAACTTGAAGGCTTGGTGAACAAGGAAGA
AGATGGTGCAATAGACAGCGACTTTGACCTCTTGTATGATGATATGGATGGTGTTCGTTA
CTTCCTTGGTGATGTCCCATGGGAGGTTTTCACCACTACAGTGAAAAAGATCTACATTGT
CCCTGCAGAACAACAGAATGAAAATGATTATCAGGAGGAGGAAGAGGACAACGCGGCTGC
TGCTGCTACTGCTGACGAAGATGGAGATGGAGCTGCTGCTGACGATGGCGTTGCTGCTGC
AGCTGACGACGTTGACGATGTTGCTGGATACACGAGCAACGATGACCCAAGCTTCGACTG
ATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATCTCGTCCAATCTATCT
ATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCATATATATGCTGCTACCATC
ATCCGTTGTTGCTACCCTTGTAAGAGACTAATGATGGTTTAATTAGCTTCTAAGTGCTGA
AATGGCATCGGT

consensusID : consensus_1393#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 659
fasta sequence

                              [ATTGCATCTTGGTAACAAGTAAAAACATGGTCCCAATATCACAGTCCTTGACCCTCTTGTGCGCAAAAATGGAAGGGGGTCGGTGCTTCCTTGGTGATGTCCCATGGGAGGTTCTCCCCCCCCCAGTCAAAAACATCTCCATTGTCCCCTGCCGAACACCAGAATGAAAATCATTTCAGGAGGAGGAAGAGGCCAACCGGGCTTCTTCTGCTACTGCTGCCGAACATGGAGATGGAGTTGCTGCTGACGATGGCGTTGCTTCTGCAGCTGACGCCGTTGACGATGTTGCGGGATCCGCGAGCAACGATGACCCAAGCTTCGCCTGATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATTTCGTCCAATCTATCTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCAAATATATGCTGCTACCATCATCCGTTGTTGCTACCCTTGTAAGAGACTAATAATGTTTTAATTAGCTTTTAAGTGCTGAAATGGCATCGGTTAAAAAAATTAAGCGTTGCAGTTGTTACTCCTGACCAGGGGTAGAATAATATTGTCCTTGTGCCATTTCAGTGTTTTTATATCGATCTCCATGAATAACATATGATTTTTTTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA761734             [ATTGCATCTTGGTAACAAGTAAAAACATGGTCCCAATATCACAGTCCTTGACCCTCTTGTGCGCAAAAATGGAAGGGGGTCGGTGCTTCCTTGGTGATGTCCCATGGGAGGTTCTCCCCCCCCCAGTCAAAAACATCTCCATTGTCCCCTGCCGAACACCAGAATGAAAATCATTTCAGGAGGAGGAAGAGGCCAACCGGGCTTCTTCTGCTACTGCTGCCGAACATGGAGATGGAGTTGCTGCTGACGATGGCGTTGCTTCTGCAGCTGACGCCGTTGACGATGTTGCGGGATCCGCGAGCAACGATGACCCAAGCTTCGCCTGATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATTTCGTCCAATCTATCTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCAAATATATGCTGCTACCATCATCCGTTGTTGCTACCCTTGTAAGAGACTAATAATGTTTTAATTAGCTTTTAAGTGCTGAAATGGCATCGGTTAAAAAAATTAAGCGTTGCAGTTGTTACTCCTGACCAGGGGTAGAATAATATTGTCCTTGTGCCATTTCAGTGTTTTTATATCGATCTCCATGAATAACATATGATTTTTTTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_1393#1
ATTGCATCTTGGTAACAAGTAAAAACATGGTCCCAATATCACAGTCCTTGACCCTCTTGT
GCGCAAAAATGGAAGGGGGTCGGTGCTTCCTTGGTGATGTCCCATGGGAGGTTCTCCCCC
CCCCAGTCAAAAACATCTCCATTGTCCCCTGCCGAACACCAGAATGAAAATCATTTCAGG
AGGAGGAAGAGGCCAACCGGGCTTCTTCTGCTACTGCTGCCGAACATGGAGATGGAGTTG
CTGCTGACGATGGCGTTGCTTCTGCAGCTGACGCCGTTGACGATGTTGCGGGATCCGCGA
GCAACGATGACCCAAGCTTCGCCTGATATAGCTACATGGCTATCGCAAGCATAGCTGCAA
CCGCGTCATTTCGTCCAATCTATCTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTA
GCTCCAAATATATGCTGCTACCATCATCCGTTGTTGCTACCCTTGTAAGAGACTAATAAT
GTTTTAATTAGCTTTTAAGTGCTGAAATGGCATCGGTTAAAAAAATTAAGCGTTGCAGTT
GTTACTCCTGACCAGGGGTAGAATAATATTGTCCTTGTGCCATTTCAGTGTTTTTATATC
GATCTCCATGAATAACATATGATTTTTTTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_1393#0      GACGAGACAAGGGGGAAGCCTATTGTGTCAGCTTTCATAGAGTTTCTGTATTATAATAGA 60
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      CCAAATCAGATTGATAAGGAGTAGGATGAAGGATAGGAATGCTTCTGCTGAGCCTGTGGT 120
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      GAAGCCAGAATTATCACCATCAAGATTTGTGAAGGTTTTCATGCATGGGGAACCCTTTGG 180
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      GAGGAAGGTCAATTTGGCTCTCCATAACAACTATGACTCTTTGTCCTTCACTTTAAAAAA 240
consensus_1393#1      ------------------------------------------------------------
                                                                                  

consensus_1393#0      ATTGGGCAACAACTATTCCATGTCACCATTTGAACTTGAAGGCTTGGTGAACAAGGAAGA 300
consensus_1393#1      ----------------------------------ATTGCAT-CTTGGT-AACAAGTAAAA 24
                                                         *** *  ****** ****** ** *

consensus_1393#0      AGATGGTGCAATAGACAGCGACTTTGACC-TCTTGTATGATGATATGGATGGTGTTCGTT 359
consensus_1393#1      ACATGGTCCCAATATCACAGTCCTTGACCCTCTTGTGCGCAAAAATGGAAGGGGGTCGGT 84
                      * ***** * *    **  * * ****** ******  *   * ***** ** * *** *

consensus_1393#0      ACTTCCTTGGTGATGTCCCATGGGAGGTTTTCACCACTACAGTGAAAAAGATCTACATTG 419
consensus_1393#1      GCTTCCTTGGTGATGTCCCATGGGAGGTTCTCCCCCCCCCAGTCAAAAACATCTCCATTG 144
                       **************************** ** ** *  **** ***** **** *****

consensus_1393#0      TCCC-TGCAGAACAACAGAATGAAAATGATTATCAGGAGGAGGAAGAGGACAACGCGGCT 478
consensus_1393#1      TCCCCTGCCGAACACCAGAATGAAAATCATT-TCAGGAGGAGGAAGAGGCCAACCGGGCT 203
                      **** *** ***** ************ *** ***************** ****  ****

consensus_1393#0      GCTGCTGCTACTGCTGACGAAGATGGAGATGGAGCTGCTGCTGACGATGGCGTTGCTGCT 538
consensus_1393#1      TCTTCTGCTACTGCTGCCGAACATGGAGATGGAGTTGCTGCTGACGATGGCGTTGCTTCT 263
                       ** ************ **** ************ ********************** **

consensus_1393#0      GCAGCTGACGACGTTGACGATGTTGCTGGATACACGAGCAACGATGACCCAAGCTTCGAC 598
consensus_1393#1      GCAGCTGACGCCGTTGACGATGTTGCGGGATCCGCGAGCAACGATGACCCAAGCTTCGCC 323
                      ********** *************** **** * ************************ *

consensus_1393#0      TGATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATCTCGTCCAATCTAT 658
consensus_1393#1      TGATATAGCTACATGGCTATCGCAAGCATAGCTGCAACCGCGTCATTTCGTCCAATCTAT 383
                      ********************************************** *************

consensus_1393#0      CTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCATATATATGCTGCTACCA 718
consensus_1393#1      CTATCTCCAATAATTAATTCTCTGCCGCTTTTAATTAGCTCCAAATATATGCTGCTACCA 443
                      ******************************************* ****************

consensus_1393#0      TCATCCGTTGTTGCTACCCTTGTAAGAGACTAATGATGGTTTAATTAGCTTCTAAGTGCT 778
consensus_1393#1      TCATCCGTTGTTGCTACCCTTGTAAGAGACTAATAATGTTTTAATTAGCTTTTAAGTGCT 503
                      ********************************** *** ************ ********

consensus_1393#0      GAAATGGCATCGGT---------------------------------------------- 792
consensus_1393#1      GAAATGGCATCGGTTAAAAAAATTAAGCGTTGCAGTTGTTACTCCTGACCAGGGGTAGAA 563
                      **************                                              

consensus_1393#0      ------------------------------------------------------------
consensus_1393#1      TAATATTGTCCTTGTGCCATTTCAGTGTTTTTATATCGATCTCCATGAATAACATATGAT 623
                                                                                  

consensus_1393#0      ------------------------------------
consensus_1393#1      TTTTTTCGTAAAAAAAAAAAAAAAAAAAAAAAAAAA 659