These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13938#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1366 fasta sequence [TTCCTCGAGCACTGTTGGCCTACTGGAAAGGCTGAAGAGGCATCAAAAGCATTGCGCCCGGAGAAAAATATTTCTGGTAAACACGCTGAATCTGAAGAACTAGTTTTTGGTGAAGATTACGAAGATTTGCAGAAATCTCTGGAGCAAGCAAGGAAATTAGCTCTAAGGAAACAGGAAGAGACTGCTGCATCTGGTCCTCTGGCTGTAGCAGAACTGGCTACTGCAAGAATAGGTCAAAAAGATGCAGATGCTGCCGAAGGAGATGCACAACAAAATAAGGTTGTTATCACAGAGATGGAAGAGTTTGTGTGGGGCCTACAGTTGAATGAAGAGACTCGCAAACCAGAAGCAGAAGATGTTTTTATGGATGAAGATGATGACATGATCATGTCAGACACTGTGGCAAAAGATGACATGAGTGGGCTGGCCGTGGTCAAAGAGGAAACTAGCGTTGAAGTCCCAGTAAAGAATGAAGAGGAAGAAGAGCTAAAACCAGATGAGATTGTACATGGAGCTGCAGTTGGCAAGGGTTTGGCTGGTGCTTTGAAGTTTCTGAAGGAACGAGGAACCCTCAATGAGGGCACAGATTGGGGAGGCAGAACCACAGATAAGAAGAAAAGCAAGCTTGCTGGTATTGAGGATGGACCAAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGC-AAGG-CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT-CTCAG-CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK105023 [TTCCTCGAGCACTGTTGGCCTACTGGAAAGGCTGAAGAGGCATCAAAAGCATTGCGCCCGGAGAAAAATATTTCTGGTAAACACGCTGAATCTGAAGAACTAGTTTTTGGTGAAGATTACGAAGATTTGCAGAAATCTCTGGAGCAAGCAAGGAAATTAGCTCTAAGGAAACAGGAAGAGACTGCTGCATCTGGTCCTCTGGCTGTAGCAGAACTGGCTACTGCAAGAATAGGTCAAAAAGATGCAGATGCTGCCGAAGGAGATGCACAACAAAATAAGGTTGTTATCACAGAGATGGAAGAGTTTGTGTGGGGCCTACAGTTGAATGAAGAGACTCGCAAACCAGAAGCAGAAGATGTTTTTATGGATGAAGATGATGACATGATCATGTCAGACACTGTGGCAAAAGATGACATGAGTGGGCTGGCCGTGGTCAAAGAGGAAACTAGCGTTGAAGTCCCAGTAAAGAATGAAGAGGAAGAAGAGCTAAAACCAGATGAGATTGTACATGGAGCTGCAGTTGGCAAGGGTTTGGCTGGTGCTTTGAAGTTTCTGAAGGAACGAGGAACCCTCAATGAGGGCACAGATTGGGGAGGCAGAACCACAGATAAGAAGAAAAGCAAGCTTGCTGGTATTGAGGATGGACCAAAAGATATTCGCATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGC AAGG CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGAAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AU057904 [ TCGCATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAA GAGGCATTTCGGGATCTTTCACACAAATTCCATGGC AAGG CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATT ] [+] EMBL CA765873 [ ggggGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTTTCACACAAATTCCATGGC AAGG CACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAG ] [+] EMBL AU057905 [ TCGAGTGTTGCCACCGAAGGAGGCATTTC GGATCTTTCACACAAATTCCATGGCNAAGGCCACCTGGTAAAATGAAGCAGGAACGGCGCCAAAAAAAGTANCGGGATGAGTTGAAACCCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCT CTCAG CAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATNCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAA ] [+] EMBL BI805253 [ GAAGCAGGTTCGGCGCC AAGTAAGTATC GGATGAGTTG AAACC AGCGAATGATATCTTCTGACACACCATTAATGTCTGCGGAGAAGATGAGAGAGGCTCAAGCTGCTCAGCCTATAC CCATACCTTGTTTTATGTGGCAATGCCAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTT GGGCC AAAAGTTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACC ACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCAC AATGCAGTCAGAACTACAGAGGTGGATTTAAAAAAAAAA ] consensusID : consensus_13938#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 686 fasta sequence [GGCAAAGCCCCTTGTAAAATTAAGCAGGAAGGGCCCCCAAANAAAGGTTCGGGTTGAGTTGAAAACCCAGCGAATGATATTTTTTGCCCCCCCATTAATGTCTTCGGAGAAAATGAGAGAGGCTCAAGCTCTTAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCAC-CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCCCAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTT---GTGTCTCCCCAAATTTACATTGGTTGTTTAAGCTGGACATACAAGTTTCGATTGCTGAAAAAAAAAAAAAAAAA] [-] EMBL CA762373 [GGCAAAGCCCCTTGTAAAATTAAGCAGGAAGGGCCCCCAAANAAAGGTTCGGGTTGAGTTGAAAACCCAGCGAATGATATTTTTTGCCCCCCCATTAATGTCTTCGGAGAAAATGAGAGAGGCTCAAGCTCTTAGCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTTTTACGCCCATGCTTGGGGCCAAAAAGGTCGAGCCCTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCCC CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACCGTAGGTTTGGAGCAGATTTCGAGGGACCTTCACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGGTGCCCCCCAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTT GTGTCTCCCCAAATTTACATTGGTTGTTTAAGCTGGACATACAAGTTTCGATTGCTGAAAAAAAAAAAAAAAA ] [-] EMBL CA762374 [ CCCATTAATTTTTGCGGAGAAGATGAGAGAGGCTCAAGCTCTCACCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCAC CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCCCAAATGCAGTCAGAATTACAGAGGTGGATTTAAAATATT GTGTCTCCCCAAATTTACATTGGTTGTTTAAGCTGGACATACAAGTTAAAA AAAAAAAAAAAAAAAAA] [-] EMBL CB637355 [ GCAAAACACCATACCTTGTTTTAAGTGGCAATGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCAC CACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGAC ] [-] EMBL CB638774 [ TGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCCTGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACGAAGCGCCCAGGGTGGAGGATTGCCTCCACNCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGAC ] consensusID : consensus_13938#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 591 fasta sequence [GANTTTTTGAACCATATTTNGGGGNGNGGGGGTNANTTTANAAAACCCNACCTNTTTAGNGCATGCAATTCGTNAAGGGGNNNCCGNGTTTGTANAGNGNGAAGNCCCCNTGGGTTTGAANCCATGTTGGGCCAAAAAGTTGGGCATTTTTTGGGCNTCAAAGGAGCCCCAGGGTGGNGGTTGCCTTCCACCACCTCCAAAGGAGCCAAAGAACTGAACCTGCAGTGGANTTGGCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCAAAAAAAAAAAAAAA] [-] EMBL AA753257 [GANTTTTTGAACCATATTTNGGGGNGNGGGGGTNANTTTANAAAACCCNACCTNTTTAGNGCATGCAATTCGTNAAGGGGNNNCCGNGTTTGTANAGNGNGAAGNCCCCNTGGGTTTGAANCCATGTTGGGCCAAAAAGTTGGGCATTTTTTGGGCNTCAAAGGAGCCCCAGGGTGGNGGTTGCCTTCCACCACCTCCAAAGGAGCCAAAGAACTGAACCTGCAGTGGANTTGGCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCAAAAAAAAAAAAAAA] [+] EMBL OSC2940A [ TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAACGACCCATGAAGCAGCCCCAAATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCTGACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAAATGCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAAATCTAaaaa ] consensusID : consensus_13938#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [AAACGAGCGCCCAGGTGGAGATTGCCTCCACCACCTCCAAAGAACCCAAGAACTGAACCTGCAGTGGACTTGGCCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGACAGATTTCGAGGGACCTACACCAGCAGATACCTACGACCCATGAAGCAGCCCCAAATGAGTTAACATCTGTACTTACAAGGCTGCACCACAATCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCACGTGCTCTGTCCCATAGAAAAACATCCTAGTATATGATGTGATACATTTTAGTACCATAAATTTGGACATGAGTAGTTAAAATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACATTCTGTACTAGATTTGTTTTCTGGGACAGAAGGAGTATATTGGGGAAAGAGGGAGTACGTTGACAAAAA] [+] EMBL BI811977 [AAACGAGCGCCCAGGTGGAGATTGCCTCCACCACCTCCAAAGAACCCAAGAACTGAACCTGCAGTGGACTTGGCCTGAGTAGAAATCAGGTGTTTTTAGTGCATTTGCTACTGTAGGTTTGGACAGATTTCGAGGGACCTACACCAGCAGATACCTACGACCCATGAAGCAGCCCCAAATGAGTTAACATCTGTACTTACAAGGCTGCACCACAATCAGTCAGAACTACAGAGGTGGATTTAAAATGTTGTCGTGTCTCCACAATCTACATTGGTTGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTTCACGTGCTCTGTCCCATAGAAAAACATCCTAGTATATGATGTGATACATTTTAGTACCATAAATTTGGACATGAGTAGTTAAAATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACATTCTGTACTAGATTTGTTTTCTGGGACAGAAGGAGTATATTGGGGAAAGAGGGAGTACGTTGACAAAAA] consensusID : consensus_13938#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 339 fasta sequence [TTGCCTCCACCACCTCSAAAGAAGCCGAAGAACTGAACCTGCAGTTGACTTTGCTGAGTAGAATTAGGTTGGTTTTAGTTCATTTTCTACTGTTGGGTTTGAGCAGATTTTGAGGGACCTTCACCAGCAGATTCCCACCGACCCATTAAGCGGCCCGAATTTAGGTTACCTTCTGTCCTAACAAGAGTGCACCACAATATGGTGTGAGAACTAGAGAGTGTGTATTTAATATGTGTGTTGTGTCTCCACAAATCTATATAGGTGTGTTTAGCTGGATATACAGTACGATAGCTGAGTGCTGACAACTTATGTGTTTAACGCGATTGTCTATAAAAACAA] [+] EMBL OS37992 [TTGCCTCCACCACCTCSAAAGAAGCCGAAGAACTGAACCTGCAGTTGACTTTGCTGAGTAGAATTAGGTTGGTTTTAGTTCATTTTCTACTGTTGGGTTTGAGCAGATTTTGAGGGACCTTCACCAGCAGATTCCCACCGACCCATTAAGCGGCCCGAATTTAGGTTACCTTCTGTCCTAACAAGAGTGCACCACAATATGGTGTGAGAACTAGAGAGTGTGTATTTAATATGTGTGTTGTGTCTCCACAAATCTATATAGGTGTGTTTAGCTGGATATACAGTACGATAGCTGAGTGCTGACAACTTATGTGTTTAACGCGATTGTCTATAAAAACAA] consensusID : consensus_13938#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 215 fasta sequence [GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTATGTGGCAATGCAAAATCGGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAG] [-] EMBL CB238430 [GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTATGTGGCAATGCAAAATCGGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGGATTGCCTCCACCACCTCCAAAGAAGCCAAAGAACTGAACCTGCAGTGGACTTGGCTGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTTTGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 TTCCTCGAGCACTGTTGGCCTACTGGAAAGGCTGAAGAGGCATCAAAAGCATTGCGCCCG 60 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GAGAAAAATATTTCTGGTAAACACGCTGAATCTGAAGAACTAGTTTTTGGTGAAGATTAC 120 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GAAGATTTGCAGAAATCTCTGGAGCAAGCAAGGAAATTAGCTCTAAGGAAACAGGAAGAG 180 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 ACTGCTGCATCTGGTCCTCTGGCTGTAGCAGAACTGGCTACTGCAAGAATAGGTCAAAAA 240 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GATGCAGATGCTGCCGAAGGAGATGCACAACAAAATAAGGTTGTTATCACAGAGATGGAA 300 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GAGTTTGTGTGGGGCCTACAGTTGAATGAAGAGACTCGCAAACCAGAAGCAGAAGATGTT 360 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 TTTATGGATGAAGATGATGACATGATCATGTCAGACACTGTGGCAAAAGATGACATGAGT 420 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GGGCTGGCCGTGGTCAAAGAGGAAACTAGCGTTGAAGTCCCAGTAAAGAATGAAGAGGAA 480 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GAAGAGCTAAAACCAGATGAGATTGTACATGGAGCTGCAGTTGGCAAGGGTTTGGCTGGT 540 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GCTTTGAAGTTTCTGAAGGAACGAGGAACCCTCAATGAGGGCACAGATTGGGGAGGCAGA 600 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 ACCACAGATAAGAAGAAAAGCAAGCTTGCTGGTATTGAGGATGGACCAAAAGATATTCGC 660 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 ATAGAAAGAATTGATGAATTTGGTCGAGTGATGACACCGAAGGAGGCATTTCGGGATCTT 720 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 TCACACAAATTCCATGGCAAGGCACCTGGTAAAATGAAGCAGGAACGGCGCC-AAAAAAA 779 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ---------------GGCAAAGCCCCTTGTAAAATTAAGCAGGAAGGGCCCCCAAANAAA 45 consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 GTATCGGGATGAGTTGAAAACCAAGCGAATGATATCTTCTGACACACCATTAATGTCTGC 839 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 GGTTCGGGTTGAGTTGAAAACCCAGCGAATGATATTTTTTGCCCCCCCATTAATGTCTTC 105 consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------GANTTTTTGAACCATATTTNGGGGNGNGGGGGTNANTTTANAAAACCC 48 consensus_13938#0 GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTAAGTGGCAA 899 consensus_13938#5 GGAGAAGATGAGAGAGGCTCAAGCTCTCAGCAAAACACCATACCTTGTTTTATGTGGCAA 60 consensus_13938#1 GGAGAAAATGAGAGAGGCTCAAGCTCTTAGCAAAACACCATACCTTGTTTTAAGTGGCAA 165 consensus_13938#3 ------------------------------------------------------------ consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 NACCTNTTTAGNGCATGCAATTCGTNAAGGGGNNNCCGNGTTTGTANAGNGNGAAGNCCC 108 consensus_13938#0 TGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCC 959 consensus_13938#5 TGCAAAATCGGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAG----------- 109 consensus_13938#1 TGCAAAATCAGGTCAAACGAGCGATGCCAGTGGCTTTGCTACAGTGGAGAAAGAGCACCC 225 consensus_13938#3 -------------------------------------------------------AAACG 5 consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 CNTGGGTTTGAANCCA----TGTTGGGCCAAAAAGTTGGGCATTTTTTGGGCNTCAAAGG 164 consensus_13938#0 TGGGAGTCTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTCTGGGCATCAAACG 1019 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 TGGGAGTTTGACGCCCATGCTTGGGGCCAAAAAGGTCGAGCACTTTTTGGGCATCAAACG 285 consensus_13938#3 A---GCGCCCAGGTGGAGATTGCCT-CCACCACCTCCAAAGAACCC-AAGAACTGAACCT 60 consensus_13938#4 -------------------TTGCCT-CCACCACCTCSAAAGAAGCCGAAGAACTGAACCT 40 consensus_13938#2 A---GCCCCAGGGTGGNGGTTGCCTTCCACCACCTCCAAAGGAGCCAAAGAACTGAACCT 221 consensus_13938#0 AAGCGCCCAGGGTGGAGGATTGCCT-CCACCACCTCCAAAGAAGCCAAAGAACTGAACCT 1078 consensus_13938#5 -----------------GATTGCCT-CCACCACCTCCAAAGAAGCCAAAGAACTGAACCT 151 consensus_13938#1 AAGCGCCCAGGGTGGAGGATTGCCT-CCACCACCTCCAAAGAAGCCAAAGAACTGAACCT 344 ****** ********** **** * ** ************* consensus_13938#3 GCAGTGGACTTGGCCTGAGTAGAAATCAGGTG-TTTTTAGTGCATTTGCTACTGT-AGGT 118 consensus_13938#4 GCAGTTGACTTTGC-TGAGTAGAATTAGGTTG-GTTTTAGTTCATTTTCTACTGTTGGGT 98 consensus_13938#2 GCAGTGGANTTGGC-TGAGTAGAAATCAGGTG-TTTTTAGTGCATTTGCTACTGTAGGTT 279 consensus_13938#0 GCAGTGGACTTGGC-TGAGTAGAAATCAGGTGTTTTTTAGTGCATTTGCTACTGTAGGTT 1137 consensus_13938#5 GCAGTGGACTTGGC-TGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTT 210 consensus_13938#1 GCAGTGGACTTGGC-TGAGTAGAAATCAGGTGGTTTTTAGTGCATTTGCTACTGTAGGTT 403 ***** ** ** ** ********* * * ** ******* ***** ******* * * consensus_13938#3 TTGGACAGATTTCGAGGGACCTACACCAGCAGATACCTAC-GACCCATGAAGCAGCCCCA 177 consensus_13938#4 TTGAGCAGATTTTGAGGGACCTTCACCAGCAGATTCCCACCGACCCATTAAGCGGCCCGA 158 consensus_13938#2 TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAAC-GACCCATGAAGCAGCCCCA 338 consensus_13938#0 TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAAC-GACCCATGAAGCAGCCCCA 1196 consensus_13938#5 TGGAG------------------------------------------------------- 215 consensus_13938#1 TGGAGCAGATTTCGAGGGACCTACACCAGCAGATACCAAC-GACCCATGAAGCAGCCCCA 462 * * consensus_13938#3 AATGAG--------------------------------------------TTAACAT--- 190 consensus_13938#4 ATTTAGG-------------------------------------------TTACCTT--- 172 consensus_13938#2 AATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCT 398 consensus_13938#0 AATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTCT 1256 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 AATGAGTTAACATGTAAGAACCTGTGAATTTTTATTCCAAGTTGATTATGTTAACATTTT 522 consensus_13938#3 -----------------------------CTGTACTTACAAGGCTGCACCACAATCAG-- 219 consensus_13938#4 -----------------------------CTGTCCTAACAAGAGTGCACCACAATATGGT 203 consensus_13938#2 GACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAA-ATGCA 457 consensus_13938#0 GACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCACCACAA-ATGCA 1315 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 GACATGGGCGATGTAACTTTTGTAACCAGCTGTACTTACAAGGCTGCCCCCCAA-ATGCA 581 consensus_13938#3 -TCAGAACTACAGAG-GTGGATTTAAAATGT-TGTCGTGTCTCCACAA-TCTACATTGGT 275 consensus_13938#4 GTGAGAACTAGAGAGTGTGTATTTAATATGTGTGTTGTGTCTCCACAAATCTATATAGGT 263 consensus_13938#2 GTCAGAACTACAGAG-GTGGATTTAAAATGT-TGTCGTGTCTCCACAAATCTACATTGGT 515 consensus_13938#0 GTCAGAACTACAGAG-GTGGATTTAAAAAAA----AAAAAAAAAAAAAGGCCACAT---- 1366 consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 GTCAGAACTACAGAG-GTGGATTTAAAATGT----TGTGTCTCCCCAAATTTACATTGGT 636 consensus_13938#3 TGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTT 335 consensus_13938#4 GTGTTTAGCTGGATATACAG--TACGATAGCTGAGTGCTGACAACTT-----ATGTGTTT 316 consensus_13938#2 TGTTTAAGCTGGACATACAAGTTACGATTGCTGAGTGCTGACAAACTTTATAGTGTTTTT 575 consensus_13938#0 ------------------------------------------------------------ consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 TGTTTAAGCTGGACATACAAGTTTCGATTGCTGAAAAAAAAAAAAAAAAA---------- 686 consensus_13938#3 CACGTGCTCTGTCCCATAGAAAAACATCCTAGTATATGATGTGATACATTTTAGTACCAT 395 consensus_13938#4 AACGCGAT-TGTC---TATAAAAACAA--------------------------------- 339 consensus_13938#2 CAAAAAAA--------AAAAAAAA------------------------------------ 591 consensus_13938#0 ------------------------------------------------------------ consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 AAATTTGGACATGAGTAGTTAAAATGTGTAACATTCTGCCTCCCAAAAACATGTGTAACA 455 consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 ------------------------------------------------------------ consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 TTCTGTACTAGATTTGTTTTCTGGGACAGAAGGAGTATATTGGGGAAAGAGGGAGTACGT 515 consensus_13938#4 ------------------------------------------------------------ consensus_13938#2 ------------------------------------------------------------ consensus_13938#0 ------------------------------------------------------------ consensus_13938#5 ------------------------------------------------------------ consensus_13938#1 ------------------------------------------------------------ consensus_13938#3 TGACAAAAA 524 consensus_13938#4 --------- consensus_13938#2 --------- consensus_13938#0 --------- consensus_13938#5 --------- consensus_13938#1 --------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||