These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 576 fasta sequence [CTCTCGCTTTGCCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC-TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC-TAATGTCTTGTCA-TTTTCTTCGGCACAAT-AAG-CAATGTAAAACCCCTATCTCCGTTTC-TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC-AAAACCTTTCCTGTAG-CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT-TTGAGGTTTTGTTTCTGTAAAAAAAAAAAAAA] [+] EMBL CA998041 [CTCTCGCTTTGCCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGTCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGACGTCGCCGGATCCTTCGCGGGCGAGCGGGCGGTGGACTACGGGGTGCACAGGGTCTGGGAGATGAACAACATCTGGAAAAGGTACCAAGATATATCTGTGCTGGGGCATAGGCCGGCCGATTAGAACGATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACGCTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT ATG CTATGTAGGACCCCTATCTCCGGTTC TGAGAGTTAGCACTCCATTCATTTACTCGAACATGATTTGTGAATT ] [+] EMBL AK062745 [ CCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGCC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT TTGAGGTT ] [+] EMBL AU064191 [ CCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGNGTGGTGATGCGCCGCAACGGTTTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGNGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTCTTAATGTCTTGTCATTTTTNTTNGGCACAATAAAG CAATGTAAAACCCCTAa ] [+] EMBL C73978 [ CTCCCCCATACCAAACTCCGCCGNCGNCGNCGCCGNCCGNCGNCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACG GTTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGNGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGG AAAGGCCGGNCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTANG TC TAATGTCTTGTCA TTTTCTTCGGNACAAT AAG CAATGTAAAANCCCTATCTCCGTTTCNTGAGAGTTAGAACTCGATTCATTTACTC AANAT ] [+] EMBL BI798183 [ gtccctGACCCGACCCCGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCCCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGCCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAGCCAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATAC AACTCCTCGGAATGAAAGTTATTCTTGAGGTTTTGTTTCTGTAAAAAAAAAA ] [+] EMBL BE039816 [ ACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT TTGAGGTTTAAAAAANAAAAAAAAAAAAAAAA] [-] EMBL OSS4322A [ cCCGGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGANCGGCCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAAC ] [+] EMBL BI796837 [ ACGAT GGCCTAT GGACGCGCTCTACCGCGTGGTGATGCGCCGCAACCCGGT TACGTCACCTTCGTCGTC CCGGACCCTTCGCCGGCGAGC GGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCT GGGCAAAGGCC GCCGAGTAGAACCATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCAC AT AA C ATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTCAAAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT TTGAGGTTTTGTTTCTGTAAAAAAAAAA ] [+] EMBL AU162363 [ TGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGATCNTACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGCC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTAAAAAAA ] [-] EMBL BU672779 [ GCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAGNCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATAC AACTCCTCGGAATGAAAGTTATT TTGAGGTTTTGTT ] [-] EMBL BU673157 [ GTGGTGATGCGCCGCAACGCGGTT TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACCAACTCCTCGGAATGAAAGTTATT T ] [-] EMBL D42684 [ AATGAAA CCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGT AAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGAT CATGGNN AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGNAAGTTATT TTGA ] consensusID : consensus_13943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence [CGTGTTATGCTCCGCTACTCGGGTCTACGGTCACCTTCGGTCGTCGCCGGAGCCGTTCGCCGGCGATTCGGGCCGGTGGACTACGGGGGGCACAAGGTCTGGGAGATGAACACAGTCGGGAAAAGGTATCGAAGAGATATCAGTGCTGGGGCATAAGGCCGGCCGAGTAGAACAAGGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGGGAAAGGTAGACACTCGTTTTAGCGTCGTAATAGTCTGGTCATTTTCGTGTCGGCACAAGTAAGCAAGGGTAAACCCCTAGTCGTCCGGTTTCGTGAGAGGTAGCACGTCGAGTCAGTGTTACGTCGAACAGTGATTTGGGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCATGTGATGGTGCGCTCTGGAATCAGTTGAATACTATACTAACTCCTCGGAATGAAAGTTATTTTGAGTTTGTTTCAAAATATCTTTTTATACAGACGCCGCATGCTGA] [-] EMBL CB966392 [CGTGTTATGCTCCGCTACTCGGGTCTACGGTCACCTTCGGTCGTCGCCGGAGCCGTTCGCCGGCGATTCGGGCCGGTGGACTACGGGGGGCACAAGGTCTGGGAGATGAACACAGTCGGGAAAAGGTATCGAAGAGATATCAGTGCTGGGGCATAAGGCCGGCCGAGTAGAACAAGGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGGGAAAGGTAGACACTCGTTTTAGCGTCGTAATAGTCTGGTCATTTTCGTGTCGGCACAAGTAAGCAAGGGTAAACCCCTAGTCGTCCGGTTTCGTGAGAGGTAGCACGTCGAGTCAGTGTTACGTCGAACAGTGATTTGGGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCATGTGATGGTGCGCTCTGGAATCAGTTGAATACTATACTAACTCCTCGGAATGAAAGTTATTTTGAGTTTGTTTCAAAATATCTTTTTATACAGACGCCGCATGCTGA] consensusID : consensus_13943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence [TTTAAGCTCTAATATCTTGTCATTTTCTTCGGCACATAAGCATGTAAAACCCCTATCTCCGTTTCTGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACCAACTCCTCGGAATGAAAGTTATTTTGAGGTTTAAAAAAAAAA] [+] EMBL BI794963 [TTTAAGCTCTAATATCTTGTCATTTTCTTCGGCACATAAGCATGTAAAACCCCTATCTCCGTTTCTGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACCAACTCCTCGGAATGAAAGTTATTTTGAGGTTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13943#0 CTCTCGCTTTGCCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCG 60 consensus_13943#2 ------------------------------------------------------------ consensus_13943#1 ------------------------------------------------------------ consensus_13943#0 CCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTG 120 consensus_13943#2 ------------------------------------------------------------ consensus_13943#1 --------------------------------------------------------CGTG 4 consensus_13943#0 GTGATGCGCCGCAACGCGG-TCTACG-TCACCTTCG-TCGTCGCCGGAGCC-TTCGCCGG 176 consensus_13943#2 ------------------------------------------------------------ consensus_13943#1 -TTATGCTCCGCTACTCGGGTCTACGGTCACCTTCGGTCGTCGCCGGAGCCGTTCGCCGG 63 consensus_13943#0 CGAGCGGG--CGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAA 234 consensus_13943#2 ------------------------------------------------------------ consensus_13943#1 CGATTCGGGCCGGTGGACTACGGGGGGCACAAGGTCTGGGAGATGAACACAGTCGGGAAA 123 consensus_13943#0 AGGTA-CGAAGATATATCAGTGCTGGGGCA-AAGGCCGGCCGAGTAGAACAATGAAAGCC 292 consensus_13943#2 ------------------------------------------------------------ consensus_13943#1 AGGTATCGAAGAGATATCAGTGCTGGGGCATAAGGCCGGCCGAGTAGAACAAGGAAAGCC 183 consensus_13943#0 CAGCACTCATCATCTTGCTTGCTTTACGTGAAAG-TAGACACTCTTTTAAGCTC--TAAT 349 consensus_13943#2 ---------------------------------------------TTTAAGCTC--TAAT 13 consensus_13943#1 CAACACTCATTATCTTGCTTGCTTTACGGGAAAGGTAGACACTCGTTTTAGCGTCGTAAT 243 *** *** **** consensus_13943#0 -GTCTTGTCATTTTCTT--CGGCACAA-TAAGCAATGTAAAACCCCTATCT---CCGTTT 402 consensus_13943#2 -ATCTTGTCATTTTCTT--CGGCACA--TAAGCA-TGTAAAACCCCTATCT---CCGTTT 64 consensus_13943#1 AGTCTGGTCATTTTCGTGTCGGCACAAGTAAGCAAGGGTAAACCCCTAGTCGTCCGGTTT 303 *** ********* * ******* ****** * ********* * **** consensus_13943#0 C-TGAGAGTTAGCAC-TCGATTCATT--TAC-TCGAACA-TGATTTGTGAATTTTGAGAT 456 consensus_13943#2 C-TGAGAGTTAGCAC-TCGATTCATT--TAC-TCGAACA-TGATTTGTGAATTTTGAGAT 118 consensus_13943#1 CGTGAGAGGTAGCACGTCGAGTCAGTGTTACGTCGAACAGTGATTTGGGAATTTTGAGAT 363 * ****** ****** **** *** * *** ******* ******* ************ consensus_13943#0 GCATGGTCAAAACCTTTCCTGTAGCC-ATGTGATGGTGCGCTCTGGAATCAGTTGAAAAC 515 consensus_13943#2 GCATGGTCAAAACCTTTCCTGTAGCCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAAC 178 consensus_13943#1 GCATGGTCAAAACCTTTCCTGTAGCC-ATGTGATGGTGCGCTCTGGAATCAGTTGAATAC 422 ************************** ****************************** ** consensus_13943#0 TATACAAACTCCTCGGAATGAAAGTTATTTTGAGGTTTTGTTTCTGTAAAAAAAAAAAAA 575 consensus_13943#2 TATACCAACTCCTCGGAATGAAAGTTATTTTGAGGTTT---------AAAAAAAAAA--- 226 consensus_13943#1 TATACTAACTCCTCGGAATGAAAGTTATTTTGAGTTTGTTTCAAAATATCTTTTTATACA 482 ***** **************************** ** * * consensus_13943#0 A-------------- 576 consensus_13943#2 --------------- consensus_13943#1 GACGCCGCATGCTGA 497 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||