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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13943#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 576 fasta sequence
[CTCTCGCTTTGCCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC-TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC-TAATGTCTTGTCA-TTTTCTTCGGCACAAT-AAG-CAATGTAAAACCCCTATCTCCGTTTC-TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC-AAAACCTTTCCTGTAG-CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT-TTGAGGTTTTGTTTCTGTAAAAAAAAAAAAAA]
[+] EMBL CA998041 [CTCTCGCTTTGCCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGTCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGACGTCGCCGGATCCTTCGCGGGCGAGCGGGCGGTGGACTACGGGGTGCACAGGGTCTGGGAGATGAACAACATCTGGAAAAGGTACCAAGATATATCTGTGCTGGGGCATAGGCCGGCCGATTAGAACGATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACGCTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT ATG CTATGTAGGACCCCTATCTCCGGTTC TGAGAGTTAGCACTCCATTCATTTACTCGAACATGATTTGTGAATT ]
[+] EMBL AK062745 [ CCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGCC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT TTGAGGTT ]
[+] EMBL AU064191 [ CCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCGCCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGNGTGGTGATGCGCCGCAACGGTTTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGNGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTCTTAATGTCTTGTCATTTTTNTTNGGCACAATAAAG CAATGTAAAACCCCTAa ]
[+] EMBL C73978 [ CTCCCCCATACCAAACTCCGCCGNCGNCGNCGCCGNCCGNCGNCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACG GTTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGNGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGG AAAGGCCGGNCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTANG TC TAATGTCTTGTCA TTTTCTTCGGNACAAT AAG CAATGTAAAANCCCTATCTCCGTTTCNTGAGAGTTAGAACTCGATTCATTTACTC AANAT ]
[+] EMBL BI798183 [ gtccctGACCCGACCCCGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCCCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGCCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAGCCAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATAC AACTCCTCGGAATGAAAGTTATTCTTGAGGTTTTGTTTCTGTAAAAAAAAAA ]
[+] EMBL BE039816 [ ACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT TTGAGGTTTAAAAAANAAAAAAAAAAAAAAAA]
[-] EMBL OSS4322A [ cCCGGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGANCGGCCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAAC ]
[+] EMBL BI796837 [ ACGAT GGCCTAT GGACGCGCTCTACCGCGTGGTGATGCGCCGCAACCCGGT TACGTCACCTTCGTCGTC CCGGACCCTTCGCCGGCGAGC GGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCT GGGCAAAGGCC GCCGAGTAGAACCATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCAC AT AA C ATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTCAAAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGAAAGTTATT TTGAGGTTTTGTTTCTGTAAAAAAAAAA ]
[+] EMBL AU162363 [ TGGGCCTATGGGACGCGCTCTACCGCGTGGTGATGCGCCGCAACGCGATCNTACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGCC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTAAAAAAA ]
[-] EMBL BU672779 [ GCGTGGTGATGCGCCGCAACGCGGTC TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAGNCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATAC AACTCCTCGGAATGAAAGTTATT TTGAGGTTTTGTT ]
[-] EMBL BU673157 [ GTGGTGATGCGCCGCAACGCGGTT TACGTCACCTTCGTCGTCGCCGGAGCCTTCGCCGGCGAGCGGGCGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAAAGGTACGAAGATATATCAGTGCTGGGGCAAAGGCCGGCCGAGTAGAACAATGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATATCTTGTCA TTTTCTTCGGCACAAT AAG CAATGTAAAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTC AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACCAACTCCTCGGAATGAAAGTTATT T ]
[-] EMBL D42684 [ AATGAAA CCCAGCACTCATCATCTTGCTTGCTTTACGTGAAAGTAGACACTCTTTTAAGCTC TAATGTCTTGTCA TTTTCTTCGGCACAAT AAG CAATGT AAACCCCTATCTCCGTTTC TGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGAT CATGGNN AAAACCTTTCCTGTAG CCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACAAACTCCTCGGAATGNAAGTTATT TTGA ]
consensusID : consensus_13943#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 497 fasta sequence
[CGTGTTATGCTCCGCTACTCGGGTCTACGGTCACCTTCGGTCGTCGCCGGAGCCGTTCGCCGGCGATTCGGGCCGGTGGACTACGGGGGGCACAAGGTCTGGGAGATGAACACAGTCGGGAAAAGGTATCGAAGAGATATCAGTGCTGGGGCATAAGGCCGGCCGAGTAGAACAAGGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGGGAAAGGTAGACACTCGTTTTAGCGTCGTAATAGTCTGGTCATTTTCGTGTCGGCACAAGTAAGCAAGGGTAAACCCCTAGTCGTCCGGTTTCGTGAGAGGTAGCACGTCGAGTCAGTGTTACGTCGAACAGTGATTTGGGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCATGTGATGGTGCGCTCTGGAATCAGTTGAATACTATACTAACTCCTCGGAATGAAAGTTATTTTGAGTTTGTTTCAAAATATCTTTTTATACAGACGCCGCATGCTGA]
[-] EMBL CB966392 [CGTGTTATGCTCCGCTACTCGGGTCTACGGTCACCTTCGGTCGTCGCCGGAGCCGTTCGCCGGCGATTCGGGCCGGTGGACTACGGGGGGCACAAGGTCTGGGAGATGAACACAGTCGGGAAAAGGTATCGAAGAGATATCAGTGCTGGGGCATAAGGCCGGCCGAGTAGAACAAGGAAAGCCCAACACTCATTATCTTGCTTGCTTTACGGGAAAGGTAGACACTCGTTTTAGCGTCGTAATAGTCTGGTCATTTTCGTGTCGGCACAAGTAAGCAAGGGTAAACCCCTAGTCGTCCGGTTTCGTGAGAGGTAGCACGTCGAGTCAGTGTTACGTCGAACAGTGATTTGGGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCATGTGATGGTGCGCTCTGGAATCAGTTGAATACTATACTAACTCCTCGGAATGAAAGTTATTTTGAGTTTGTTTCAAAATATCTTTTTATACAGACGCCGCATGCTGA]
consensusID : consensus_13943#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 226 fasta sequence
[TTTAAGCTCTAATATCTTGTCATTTTCTTCGGCACATAAGCATGTAAAACCCCTATCTCCGTTTCTGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACCAACTCCTCGGAATGAAAGTTATTTTGAGGTTTAAAAAAAAAA]
[+] EMBL BI794963 [TTTAAGCTCTAATATCTTGTCATTTTCTTCGGCACATAAGCATGTAAAACCCCTATCTCCGTTTCTGAGAGTTAGCACTCGATTCATTTACTCGAACATGATTTGTGAATTTTGAGATGCATGGTCAAAACCTTTCCTGTAGCCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAACTATACCAACTCCTCGGAATGAAAGTTATTTTGAGGTTTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13943#0 CTCTCGCTTTGCCCCCAACGAATCCCTCCCCCATACCAAACTCCGCCGCCGCCGCCGCCG 60
consensus_13943#2 ------------------------------------------------------------
consensus_13943#1 ------------------------------------------------------------
consensus_13943#0 CCCGCCGCCGCCGAGACCGACCCGACCACGATGGGCCTATGGGACGCGCTCTACCGCGTG 120
consensus_13943#2 ------------------------------------------------------------
consensus_13943#1 --------------------------------------------------------CGTG 4
consensus_13943#0 GTGATGCGCCGCAACGCGG-TCTACG-TCACCTTCG-TCGTCGCCGGAGCC-TTCGCCGG 176
consensus_13943#2 ------------------------------------------------------------
consensus_13943#1 -TTATGCTCCGCTACTCGGGTCTACGGTCACCTTCGGTCGTCGCCGGAGCCGTTCGCCGG 63
consensus_13943#0 CGAGCGGG--CGGTGGACTACGGGGTGCACAAGGTCTGGGAGATGAACAACATCGGGAAA 234
consensus_13943#2 ------------------------------------------------------------
consensus_13943#1 CGATTCGGGCCGGTGGACTACGGGGGGCACAAGGTCTGGGAGATGAACACAGTCGGGAAA 123
consensus_13943#0 AGGTA-CGAAGATATATCAGTGCTGGGGCA-AAGGCCGGCCGAGTAGAACAATGAAAGCC 292
consensus_13943#2 ------------------------------------------------------------
consensus_13943#1 AGGTATCGAAGAGATATCAGTGCTGGGGCATAAGGCCGGCCGAGTAGAACAAGGAAAGCC 183
consensus_13943#0 CAGCACTCATCATCTTGCTTGCTTTACGTGAAAG-TAGACACTCTTTTAAGCTC--TAAT 349
consensus_13943#2 ---------------------------------------------TTTAAGCTC--TAAT 13
consensus_13943#1 CAACACTCATTATCTTGCTTGCTTTACGGGAAAGGTAGACACTCGTTTTAGCGTCGTAAT 243
*** *** ****
consensus_13943#0 -GTCTTGTCATTTTCTT--CGGCACAA-TAAGCAATGTAAAACCCCTATCT---CCGTTT 402
consensus_13943#2 -ATCTTGTCATTTTCTT--CGGCACA--TAAGCA-TGTAAAACCCCTATCT---CCGTTT 64
consensus_13943#1 AGTCTGGTCATTTTCGTGTCGGCACAAGTAAGCAAGGGTAAACCCCTAGTCGTCCGGTTT 303
*** ********* * ******* ****** * ********* * ****
consensus_13943#0 C-TGAGAGTTAGCAC-TCGATTCATT--TAC-TCGAACA-TGATTTGTGAATTTTGAGAT 456
consensus_13943#2 C-TGAGAGTTAGCAC-TCGATTCATT--TAC-TCGAACA-TGATTTGTGAATTTTGAGAT 118
consensus_13943#1 CGTGAGAGGTAGCACGTCGAGTCAGTGTTACGTCGAACAGTGATTTGGGAATTTTGAGAT 363
* ****** ****** **** *** * *** ******* ******* ************
consensus_13943#0 GCATGGTCAAAACCTTTCCTGTAGCC-ATGTGATGGTGCGCTCTGGAATCAGTTGAAAAC 515
consensus_13943#2 GCATGGTCAAAACCTTTCCTGTAGCCCATGTGATGGTGCGCTCTGGAATCAGTTGAAAAC 178
consensus_13943#1 GCATGGTCAAAACCTTTCCTGTAGCC-ATGTGATGGTGCGCTCTGGAATCAGTTGAATAC 422
************************** ****************************** **
consensus_13943#0 TATACAAACTCCTCGGAATGAAAGTTATTTTGAGGTTTTGTTTCTGTAAAAAAAAAAAAA 575
consensus_13943#2 TATACCAACTCCTCGGAATGAAAGTTATTTTGAGGTTT---------AAAAAAAAAA--- 226
consensus_13943#1 TATACTAACTCCTCGGAATGAAAGTTATTTTGAGTTTGTTTCAAAATATCTTTTTATACA 482
***** **************************** ** * *
consensus_13943#0 A-------------- 576
consensus_13943#2 ---------------
consensus_13943#1 GACGCCGCATGCTGA 497
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||