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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13945#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 2028 fasta sequence
[CTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGGTGTGTATCGTATACAATTACTGCATATGTATGCATGCTCCACATCAGTATATTGATCATCCCCGTATACAAGAAATGAACAACAGTAGGAGTAGTATTGAGTATTCTAGTGTTACTTTCTTTTACTTTGAGAACGAATTAATGGCATCTAATTTGTGTAAGCAAATTACTACTGGTTTCACTAGTCCTGAATTGTAGATGTAAGCTACTAGCTGTTAGACTATAAGAAGCCATTAATTAGTCGATAACAACATGCAATTGCATCTTGTCTTTATTTGACTATATATGTTGTTTTTTTCCAGTATGTATATGTTTAAAGCCCTATCGATCTAACTCTGAATATGCTAAGATAGAGTACAGAAAACATGATGCATATGCACCAGTACTGCTTGCAGGACTGTTCAGACATAATTTAATTTGTTATGCATCTGACCTGATCATCAAGTGGATTGATTGGTGATATATAAATGGTAACAAAAGTATAGTAGTGGAGAAGAAACGTGGAGAATTGGGTTTTACATTAAACTTTGCACGGTACAAGACATTAGACATCGATCGGTGCCTAAGCTAGTTGGAATTTTGCAATGATCTTCCCTTTTTCTGATCTTGCTTTTTGTGTGCATTAATTGTTCCGCTTGTTGCTTGAGAGTTGGAGTAGTACGCATCTCGATTGCAACTCATTTTGCGCGTGAATGAGTACCAATTTGGATTCGATCGTCATCGAGAAAGAGACAA-GATACATATTTTTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCGTAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTTCTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATAAGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATGCCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGA-CGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCACTCTGAAATCTG-AGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCA-GGCGAGGGCAGCAACCAAACAG-CCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCA-TTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAG-CAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAA----AAAAAANAAAACTCGGCCGAA]
[+] EMBL AK066367 [CTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGGTGTGTATCGTATACAATTACTGCATATGTATGCATGCTCCACATCAGTATATTGATCATCCCCGTATACAAGAAATGAACAACAGTAGGAGTAGTATTGAGTATTCTAGTGTTACTTTCTTTTACTTTGAGAACGAATTAATGGCATCTAATTTGTGTAAGCAAATTACTACTGGTTTCACTAGTCCTGAATTGTAGATGTAAGCTACTAGCTGTTAGACTATAAGAAGCCATTAATTAGTCGATAACAACATGCAATTGCATCTTGTCTTTATTTGACTATATATGTTGTTTTTTTCCAGTATGTATATGTTTAAAGCCCTATCGATCTAACTCTGAATATGCTAAGATAGAGTACAGAAAACATGATGCATATGCACCAGTACTGCTTGCAGGACTGTTCAGACATAATTTAATTTGTTATGCATCTGACCTGATCATCAAGTGGATTGATTGGTGATATATAAATGGTAACAAAAGTATAGTAGTGGAGAAGAAACGTGGAGAATTGGGTTTTACATTAAACTTTGCACGGTACAAGACATTAGACATCGATCGGTGCCTAAGCTAGTTGGAATTTTGCAATGATCTTCCCTTTTTCTGATCTTGCTTTTTGTGTGCATTAATTGTTCCGCTTGTTGCTTGAGAGTTGGAGTAGTACGCATCTCGATTGCAACTCATTTTGCGCGTGAATGAGTACCAATTTGGATTCGATCGTCATCGAGAAAGAGACAA GATACATATTTTTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCGTAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTTCTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATAAGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATGCCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGA CGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCACTCTGAAATCTG AGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCA GGCGAGGGCAGCAACCAAACAG CCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCA TTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAG CAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGA ]
[+] EMBL CB639509 [ GAGATACGAGAGGT ATGTGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCTTCGCCGCCTTGNTCGATCCG ]
[-] EMBL CB668822 [ GAGAAAGAGACAAGGATCCATATTTTTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCGTAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTTCTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATAAGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATGCCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGA CGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCACTCTGAAATCTG AGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCA GGCGAGGGCAGCAACCAAACAG CCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCA TTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAG CAAAGAGGCAATTGAG ]
[+] EMBL BM038729 [ CCCGAGTCCCGACAAGTTCAGTTTATGACCGATGGAATCCATCCAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCCCTCTGAAATCTGAAGGGCGTGTTTGCTTGCTGCCCTCGGATTCGCGCCTGGCTCAGGCGTCGATCTCAGGCGTCCGATTTCGGTCACCTGCGATCGGATCGACCTGCCTGAGCCATGGTCTCCACGGCGAGGGCAGCAACCCAACAGCCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCACTTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTG TATATATATTTATGTGTTGATCTGGTAATTCNATGTAGTAGCCCAAGAGGCCATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCCAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAA AAAAAA ]
[-] EMBL BE229637 [ TATTTANGTGTTGATCTGGTAATTCAATGTAGTAG CAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAANAAAACTCGGCCGAA]
consensusID : consensus_13945#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1088 fasta sequence
[CACTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCATGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGC-TGAATCGCTGAACCACTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAACTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT]
[+] EMBL AK060126 [CACTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCATGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGC TGAATCGCTGAACCACTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCT ]
[+] EMBL CF280358 [ ATTC AGAGA AGGAGAGTTAATTAGAAAGCTTAGCTACCACAATGCATGCGTGCAACCTGATAGCTTA ]
[+] EMBL C27765 [ TATCTCGATCGATCGCCTCATCGATCGACGACGACGTGCGTAATCGATCAGTGCAATCCCTTTGGAATTTTCCTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCTTGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGGATCAATCAAAGGAATATGGTTCG ACGGCTTGAATCGCTGAACCACTCTGAAATCTAGGGGCGTGTTT CTTTCNGCCCTNA ATTC ]
[-] EMBL CF280357 [ CCTTGATCAATCCGCAAGCTGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGC TGAATCGCTGAACCACTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCAGATTCGCGCCCGGCTCATGCGTCGATCTCAGGCGTCCGATTTCGGTCGCCTGCGGTCGGATCGACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAA ]
[+] EMBL CF332502 [ TGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTC AAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACTGTCATGCCGTTACGTACCGTAT]
consensusID : consensus_13945#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 678 fasta sequence
[CTTCCGCCTCCTCATGTTCCTTGATCGGATGACTCCTTTGCCTGCTGCACGCGCTTGCCTGCCGGCTTGCTTCTTCCATGCGCGCCTTGATCAATCCGCAAGCTGGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCGCTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCGGATTCGCGCCTGGCTCAGGGCGTCGATCTCAGACGTCCGATTCGGTCGCCTGCGGTCGGATCGACCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAAC-AGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATTTATGTGTCGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAAAAAAAA]
[-] EMBL CA760915 [CTTCCGCCTCCTCATGTTCCTTGATCGGATGACTCCTTTGCCTGCTGCACGCGCTTGCCTGCCGGCTTGCTTCTTCCATGCGCGCCTTGATCAATCCGCAAGCTGGCTCCAGATTCAGGAGTTAAATCGAAGCCCAACGCTAGCACACAGTGCAAGAAGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCCCGACAAGTTCAGTTTATGACGATGGAATCAATCAAAGGAATATGGTTCGCACGGCTGAATCGCTGAACCGCTCTGAAATCTGAGGGCGTGTTTGCTTGCTGCCCTCGGATTCGCGCCTGGCTCAGGGCGTCGATCTCAGACGTCCGATTCGGTCGCCTGCGGTCGGATCGACCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAAC AGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATTTATGTGTCGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAAAAAAAAAAAA]
[-] EMBL OSA309286 [ CGACCTGCCTGAGCAATGGTCTCCAGGCGAGAGCAGCAACCAAACAACCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTT GTCCATAAGGCCGAGTGCAGAACAACTTGTATATATA TTA GTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATTCTGATGTCCTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT ]
consensusID : consensus_13945#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 625 fasta sequence
[TGCGCCGCCCCGCGCGCTCCTCCCGGCCAGTCCCACCAGCGCGCGCCGCCCGCACGCCCATACGGCTCTCGTCGTCCCTCCGCCCGCCGCTCCATGTCGCCGTCCCCCTCATTGGCGCCGGCCTCTAGCGCGCGCCCGGGCTCACGCCCTATAGAGTGCGCCCCCCCGCGCCCGCGGCGCGCTTGCCCCCGCCCCCGCCCACCGACGCCGCTCCGGTGCCGCCCCGCCCTCCCGCCGACGCCCCTCCCCCAATCCGAGCGCGCGCCGCCCCCCGCCGGCCTCGCACTCGCCCCGTGGCCCAGCGCGTCGATTTCACCGCTCCCATTCGGTCGCCTCCGGTTGGATCGCCCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTGGTCCATAAGGCCGAGTGCAGAACAACTGGTATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTT]
[-] EMBL CA761572 [TGCGCCGCCCCGCGCGCTCCTCCCGGCCAGTCCCACCAGCGCGCGCCGCCCGCACGCCCATACGGCTCTCGTCGTCCCTCCGCCCGCCGCTCCATGTCGCCGTCCCCCTCATTGGCGCCGGCCTCTAGCGCGCGCCCGGGCTCACGCCCTATAGAGTGCGCCCCCCCGCGCCCGCGGCGCGCTTGCCCCCGCCCCCGCCCACCGACGCCGCTCCGGTGCCGCCCCGCCCTCCCGCCGACGCCCCTCCCCCAATCCGAGCGCGCGCCGCCCCCCGCCGGCCTCGCACTCGCCCCGTGGCCCAGCGCGTCGATTTCACCGCTCCCATTCGGTCGCCTCCGGTTGGATCGCCCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAACCAAACAGCCCCTGAATACCTGGCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTGGTCCATAAGGCCGAGTGCAGAACAACTGGTATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTT]
consensusID : consensus_13945#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 581 fasta sequence
[GGNAAANCCGGGGNAAATNNGAAAANAGGNNTTTNNGGGANGAAAAAATNGGCNANCNAGGGGGNTTTNTTAAAAAAAGGGGGAAAAAAANAGGGNTCCCGGATCCCAAAAAAATTAAGTTANGGGGGAGGGGANTCAAATCNAAGGGAAAAGGNTTCNNNNANGGGGGGGATTCGCAGGAGNCCNAAANNGGNATNGGGGGGGGGGGTTNGGTATGCNTNCCCTTNAGNNATCGNCNCCCGGGTTNANGGGTNGAAATNTCNGGGATTCGGATTTCGGTCCCCCTGCCGGTCGGATTNGGACTGCTNGACCAATGGTNTCCAGGNGGGGCAGCAAACCNAACAGCCCNNGAANACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT]
[-] EMBL BE229136 [GGNAAANCCGGGGNAAATNNGAAAANAGGNNTTTNNGGGANGAAAAAATNGGCNANCNAGGGGGNTTTNTTAAAAAAAGGGGGAAAAAAANAGGGNTCCCGGATCCCAAAAAAATTAAGTTANGGGGGAGGGGANTCAAATCNAAGGGAAAAGGNTTCNNNNANGGGGGGGATTCGCAGGAGNCCNAAANNGGNATNGGGGGGGGGGGTTNGGTATGCNTNCCCTTNAGNNATCGNCNCCCGGGTTNANGGGTNGAAATNTCNGGGATTCGGATTTCGGTCCCCCTGCCGGTCGGATTNGGACTGCTNGACCAATGGTNTCCAGGNGGGGCAGCAAACCNAACAGCCCNNGAANACCTGGCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAGGCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAGTAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGTCTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 CTTAGCTTAGTGTTTACCTAGCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCAC 60
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TTTGAATTCTAGAGATAGGAGAGTTAATTAGATAGCTTAGCTACCACAATGCATGCGTGC 120
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 AACCTGATAGCTTAGCTACGCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCT 180
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 GAGGAAACTAGTGGAGGACTCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGA 240
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TCGCCTCATCGATCGACGACGACGTGCGTGATCGATCAGTGCAATCCCTTTGGAATTTTC 300
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 CTCTTGCTTCCGCCTCCTCATCTTCCTTGATCGATCGATCCTTTGCCTGCTGGACGCGCT 360
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TGCCTGCCGGCTTGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTGCTCCAGATTC 420
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 AGGAGTTAAATCGAAGCCCAACGCTAGCACACAGGTGTGTATCGTATACAATTACTGCAT 480
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 ATGTATGCATGCTCCACATCAGTATATTGATCATCCCCGTATACAAGAAATGAACAACAG 540
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TAGGAGTAGTATTGAGTATTCTAGTGTTACTTTCTTTTACTTTGAGAACGAATTAATGGC 600
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 ATCTAATTTGTGTAAGCAAATTACTACTGGTTTCACTAGTCCTGAATTGTAGATGTAAGC 660
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TACTAGCTGTTAGACTATAAGAAGCCATTAATTAGTCGATAACAACATGCAATTGCATCT 720
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TGTCTTTATTTGACTATATATGTTGTTTTTTTCCAGTATGTATATGTTTAAAGCCCTATC 780
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 GATCTAACTCTGAATATGCTAAGATAGAGTACAGAAAACATGATGCATATGCACCAGTAC 840
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TGCTTGCAGGACTGTTCAGACATAATTTAATTTGTTATGCATCTGACCTGATCATCAAGT 900
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 ------------------------------------------------------------
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 GGATTGATTGGTGATATATAAATGGTAACAAAAGTATAGTAGTGGAGAAGAAACGTGGAG 960
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 --------------------------------------CACTTAGCTTAGTGTTTACCTA 22
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 AATTGGGTTTTACATTAAACTTTGCACGGTACAAGACATTAGACATCGATCGGTGCCTAA 1020
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 GCTAGCTAGCAGCTGGCTGCAACAAACATTCTGCATGCACTTTGAATTCTAGAGATAGGA 82
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 GCTAGTTGGAATTTTGCAATGATCTTCCCTTTTTCTGATCTTGCTTTTTGTGTGCATTAA 1080
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 GAGTTAATTAGATAGCTTAGCTACCACAAT-GCATGCGTGCAACCTGATAGCTTAGCTAC 141
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TTGTTCCGCTTGTTGCTTGAGAGTTGGAGTAGTACGCATCTCGATTGCAACTCATTTTGC 1140
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 GCGTAGTTGCCAATTCAACCGGCCGACATATATATCGGCCTGAGGAAACTAGTGGAGGAC 201
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 GCGTGAATGAGTACCAATTTGGATTCGATCGTCATCGAGAAAGAGACAAGATACATATTT 1200
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 TCCAAAGGGATCGCATTGATCTGGCTAGCTATCTCGATCGATCGCCTCATCGATCGACGA 261
consensus_13945#2 ------------------------------------------------------------
consensus_13945#0 TTTGCGAACGCGTAAAAAAATAGCACGTCAATATATTAGAAGAAACTGATACATACTCCG 1260
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 CGACGTGCATGATCGATCAGTGCAATCCCTTTGGAATTTTCCTCT-TGCTTCCGCCTCCT 320
consensus_13945#2 ------------------------------------------------CTTCCGCCTCCT 12
consensus_13945#0 TAGCTATCTTAATTTTATCTCTCCATCGCATGCAACTAAACTAATGTACTACTATATTTT 1320
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 CATCTTCCTTGATCGATCGA--TCCTTTGCCTGCTGGACGCGCTTGCCTG----CCGGCT 374
consensus_13945#2 CATGTTCCTTGATCGGATGAC-TCCTTTGCCTGCTGCACGCGCTTGCCTG----CCGGCT 67
consensus_13945#0 CTCTTATCAAGAGAAAAGGAACACAAACGATCATTGCACAATATTTCCGGAACCCAAATA 1380
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ----------------------------------------------TGCGCCGCCCCGCG 14
consensus_13945#1 TGCTTCTTCCATCGCCGCCTTGATCAATCCGCAAGCTG-CTCCAGATTCAGGAGTTAAAT 433
consensus_13945#2 TGCTTCTTCCATGCGCGCCTTGATCAATCCGCAAGCTGGCTCCAGATTCAGGAGTTAAAT 127
consensus_13945#0 AGCTAGCTCTGTCAATGCTTATAAACGTACTCCTATATAAAATATATAGTTGATGATATG 1440
consensus_13945#4 -----------------------------------------------------GGNAAAN 7
consensus_13945#3 CGCTCCTCCCGGCCAGTCCCACCAGCGCGCGCCGCCCGCACGCCCATACGGCTCTCGTCG 74
consensus_13945#1 CGAAGCCCAACGCTAGCACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGA 493
consensus_13945#2 CGAAGCCCAACGCTAGCACACAGTG------------------------------CAAGA 157
consensus_13945#0 CCATGATGCATTATTGAACACAGTGATGTCTGCTGAAAGTGCATATTTGGCAGTGCAAGA 1500
consensus_13945#4 CCGGGGNAAATNN--GAAAANAGGNNTTTN---NGGGANGAAAAAATNGGCNANCNAGGG 62
consensus_13945#3 TCCCTCCGCCCGCCGCTCCATGTCGCCGTCCCCCTCATTGGCG---CCGGC--CTCTAGC 129
* *
consensus_13945#1 AGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCC-CGACAAGTTCAGTTT 552
consensus_13945#2 AGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCC-CGACAAGTTCAGTTT 216
consensus_13945#0 AGGTCTTTTGACAGACAGGGTAAAACATATAGAGTCCCGAGTCC-CGACAAGTTCAGTTT 1559
consensus_13945#4 GGNTTTNTTAAAAAAAGGGGGAAAAAAANAGGGNTCCCGGATCC-CAAAAAAATTAAGTT 121
consensus_13945#3 GCGCGCCCGGGCTCACGCCCTATAGAGTGCGCCCCCCCGCGCCCGCGGCGCGCTT-GCCC 188
* * * **** ** * *
consensus_13945#1 ATGACGATGG--AATCAA--TCAAAGGAATATGGTTCGCAC----GGCTGAATCGCTGAA 604
consensus_13945#2 ATGACGATGG--AATCAA--TCAAAGGAATATGGTTCGCAC----GGCTGAATCGCTGAA 268
consensus_13945#0 ATGACGATGG--AATCAA--TCAAAGGAATATGGTTCGCAC----GGCTGAATCGCTGAA 1611
consensus_13945#4 ANGGGGGAGGGGANTCAAATCNAAGGGAAAAGGNTTCNNNNANGGGGGGGATTCGCAGGA 181
consensus_13945#3 CCGCCCCCGC----CCAC--CGACGCCGCTCCGGTGCCGCCC---CGCCCTCCCGCCGAC 239
* * ** * * * * * *** *
consensus_13945#1 CCACT---CTGAAATCTGAGGG------CGTGTTTGCTTGCTGCCCTCAGATTCGCGCCC 655
consensus_13945#2 CCGCT---CTGAAATCTGAGGG------CGTGTTTGCTTGCTGCCCTCGGATTCGCGCCT 319
consensus_13945#0 CCACT---CTGAAATCTGAGGG------CGTGTTTGCTTGCTGCCCTCAGATTCGCGCCC 1662
consensus_13945#4 GNCCNAAANNGGNATNGGGGGGGGGGGTTNGGTATGCNTNCCCTTNAGNNATCGNCNCCC 241
consensus_13945#3 GCCCCTC-CCCCAATCCGAGCGCG----CGCCGCCCCCCGCCGGCCTCGCACTCGCCCCG 294
* ** * * * * * * * **
consensus_13945#1 GG-CTCATG-CGTCGA--TCTCAGGCGTCCG-ATTTCGGTCGCCTG--CGGTCGGAT-CG 707
consensus_13945#2 GG-CTCAGGGCGTCGA--TCTCAGACGTCCG-ATT-CGGTCGCCTG--CGGTCGGAT-CG 371
consensus_13945#0 GG-CTCATG-CGTCGA--TCTCAGGCGTCCG-ATTTCGGTCGCCTG--CGGTCGGAT-CG 1714
consensus_13945#4 GGGTTNANG-GGTNGAAATNTCNGGGATTCGGATTTCGGTCCCCCTGCCGGTCGGATTNG 300
consensus_13945#3 TGGCCCAGCGCGTCGA--TTTCACCGCTCCC-ATT-CGGTCGCCTC--CGGTTGGAT-CG 347
* * ** ** * ** * * *** ***** ** **** **** *
consensus_13945#1 ACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 766
consensus_13945#2 ACCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 430
consensus_13945#0 ACCTGCCTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 1773
consensus_13945#4 GACTGCTNGACCAATGGTNTCCAGGNG-GGGCAGCAAACCNAACAGCCCNNGAANACCTG 359
consensus_13945#3 CCCTGCTTGAGCAATGGTCTCCAGGCGAGGGCAGCAA-CCAAACAGCCCCTGAATACCTG 406
**** ** ******* ****** * ********* ** ******** *** *****
consensus_13945#1 GCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 826
consensus_13945#2 GCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 490
consensus_13945#0 GCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 1833
consensus_13945#4 GCTAGCTAAGGTTTCTGATCTATTCTGGCTGATCAGTGTCCATTTTCTTTCGTCCATAAG 419
consensus_13945#3 GCTAGCTAAGGTTTCTGATCTCTTCTGGCTGATCAGTGTCCATTTTCTTTGGTCCATAAG 466
********************* **************************** *********
consensus_13945#1 GCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAG 886
consensus_13945#2 GCCGAGTGCAGAACAACTTGTATATATA--TTTATGTGTCGATCTGGTAATTCAATGTAG 548
consensus_13945#0 GCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAG 1893
consensus_13945#4 GCCGAGTGCAGAACAACTTGTATATATATATTTATGTGTTGATCTGGTAATTCAATGTAG 479
consensus_13945#3 GCCGAGTGCAGAACAACTGGTATATATA--TTTATGTGTTGATCTGGTAATTCAATGTAG 524
****************** ********* ********* ********************
consensus_13945#1 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 946
consensus_13945#2 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 608
consensus_13945#0 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 1953
consensus_13945#4 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 539
consensus_13945#3 TAGCAAAGAGGCAATTGAGGATTCTGCACACACGCATCTACTGTAGCAGAATACTGATGT 584
************************************************************
consensus_13945#1 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAACTCAA 1006
consensus_13945#2 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAATCTCAA 668
consensus_13945#0 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTTCAGAGAGGAAAAAAAAAA 2013
consensus_13945#4 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTTT------------------ 581
consensus_13945#3 CTTTTATGTAATCCTGTCAAAGTTACTAGTAAAATTTTCTT------------------- 625
*****************************************
consensus_13945#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCACT 1066
consensus_13945#2 AAAAAAAAAA-------------------------------------------------- 678
consensus_13945#0 NAAAACTCGGCCGAA--------------------------------------------- 2028
consensus_13945#4 ------------------------------------------------------------
consensus_13945#3 ------------------------------------------------------------
consensus_13945#1 GTCATGCCGTTACGTACCGTAT 1088
consensus_13945#2 ----------------------
consensus_13945#0 ----------------------
consensus_13945#4 ----------------------
consensus_13945#3 ----------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||