These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13950#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 793 fasta sequence [TGACTATGGGCACCAGGAAGCATCTAGTAAGTTTGGAAATGACCCAAGAACTTACGAAGTCCTGACCAAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCGGGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT-CCTAGGCCCTGAAGCGACTATTG-CTGAGAAACTA-GGTTTGGAGAAAGACAACCGG-TCTAACTTCAAAGCTCAATTTGGAAACTTTG-CAACCAGTGT-GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT-GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT-CAAGGAATGAACAAGATGCCGCAGAGGA-CATAA-CCCCCT-CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG-CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC-TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC-CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA--AAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL CF311263 [TGACTATGGGCACCAGGAAGCATCTAGTAAGTTTGGAAATGACCCAAGAACTTACGAAGTCCTGACCAAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCGGGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTA CTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTAGGGTTTGGAGAAAGACAACCGG TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGTGGGATGGCATTTTTGCTGCCGGGGACTGCAGACGT ] [-] EMBL CB642145 [ AAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCGGGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTA GGTTTGGAGAAAGACAACCGG TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCATTAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTTTGCGTTGTTCCTTTTCCAGTAAAATGATTTGCATGGGGAGA GCTCGTTTagattt ] [-] EMBL CA760007 [ aCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTA GGTTTGGAGAAAGACAACCGGTTCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAG TAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC CTGTTACTTTTACAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGCACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAAAA ] [+] EMBL C98372 [ AAAGTCGATGGGAGATCCCAGTTCAAGGAAATTGAA GCTCANCCGGGCCCATTGAGNCTAATCTTGTCCCCCTAGCTATGGGGTTCCCTAGCCCCTGAAGCGACTATTGCCTGAGNAACTA GNTTTGGAGAAAGACAACCGN TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTCCCGGGGNCTGCAGCCNTGGACAATCACTTGTTGGTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGTCCAAGGAATGAACAAGATNCCGCAGAGGACCATAA CCCCCTCCGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGNCCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAAAAAAAAAAAAAAAAA ] [+] EMBL CB096210 [ GAAATTGAAGGCTCAAACGAGACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTT CCTAGGCCCTGAAGCGACTATTG CTGAGAAACTA GGTTTGGAGAAAGACAACCGG TCTAACTTCAAAGCTCAATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAG TAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGC ] [-] EMBL CF312101 [ CAATTTGGAAACTTCGCCAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAACCCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC TGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA TTAAAAAAAAAA ] [+] EMBL BE040127 [ ATTTGGAAACTTTG CAACCAGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAG TAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTACAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA TTAAAAAAAAAAAAAAAAAAAA ] [+] EMBL OSS3205A [ AGTGT GGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACTTGTT GTTTGGGCTATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATA ] [+] EMBL AU056626 [ GCTGCAGCTGTCGACAAGTACTTGT CAAGGAATGAACAAGATNCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTATTAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU097248 [ GTACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAGTCATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAA ] [+] EMBL CB238489 [ ACTTGT CAAGGAATGAACAAGATGCCGCAGAGGA CATAA CCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACG TTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGT ] [-] EMBL CB627672 [ GAATGAACAAGATGCCGCAGGGGA CATAA CCCCCT CGGGTGCAGGTTTTGTGCAGCCTGTTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTCTGC TTGTTACTTTTACAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTA ] [+] EMBL AU032385 [ cnCAGAGGA CATAA CCCCNT CGGGTGCAGGTTTTGTGCAGCCTGNTGCAG CATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATCAACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAGGGAAAAGAGAAGNGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTTNTGC TTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGC CGTTTTGTAATCTGAATAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTA AAAAAAAAAAA ] consensusID : consensus_13950#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 286 fasta sequence [ACCCTGTTGCAGCATAAATTAAACAGGCAAACTTTTCAAGACCAGTGCAATTTAAATTAGGATCAACGTTTTAGTTTTTGATCACAGCAAGTTGTTTTTTAAAAATAAGGCCGGGCTCAATAGGGAAAAAAAAAGACCCTTTTTATATTTTGGTAAATAAACAATTGGAAATTTTGGGGTGTTCGGCTTGTTACTTTTCCAGTAAAATAATTTGCATGGTGAAAACCCGTTTTGTAATCTGAAAAAAAATGGACAGTTGTTTTGGTTTTAAAAAAAAAAAAAAAAA] [-] EMBL CF311264 [ACCCTGTTGCAGCATAAATTAAACAGGCAAACTTTTCAAGACCAGTGCAATTTAAATTAGGATCAACGTTTTAGTTTTTGATCACAGCAAGTTGTTTTTTAAAAATAAGGCCGGGCTCAATAGGGAAAAAAAAAGACCCTTTTTATATTTTGGTAAATAAACAATTGGAAATTTTGGGGTGTTCGGCTTGTTACTTTTCCAGTAAAATAATTTGCATGGTGAAAACCCGTTTTGTAATCTGAAAAAAAATGGACAGTTGTTTTGGTTTTAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13950#0 TGACTATGGGCACCAGGAAGCATCTAGTAAGTTTGGAAATGACCCAAGAACTTACGAAGT 60 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 CCTGACCAAGCGTTTTATTGGTGATGAAAATGGAAACGTGAAGGCCCTTGAGGTGGTCCG 120 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 GGTCAAGTGGGAGAAAGTCGATGGGAGATTCCAGTTCAAAGAAATTGAAGGCTCAAACGA 180 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 GACCATTGAGGCTGATCTTGTCCTCCTAGCTATGGGGTTCCTAGGCCCTGAAGCGACTAT 240 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 TGCTGAGAAACTAGGTTTGGAGAAAGACAACCGGTCTAACTTCAAAGCTCAATTTGGAAA 300 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 CTTTGCAACCAGTGTGGATGGCATTTTTGCTGCCGGGGACTGCAGACGTGGACAATCACT 360 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 TGTTGTTTGGGCCATCACCGAGGGGCGGCAAGCTGCTGCAGCTGTCGACAAGTACTTGTC 420 consensus_13950#1 ------------------------------------------------------------ consensus_13950#0 AAGGAATGAACAAGATGCCGCAGAGGACATAACCCCCTCGGGTGCAGGTTTTGTGCAGCC 480 consensus_13950#1 --------------------------------------------------------ACCC 4 * ** consensus_13950#0 TGTTGCAGCATAAATGAAACAGGCAAACTTTTCAAGACCAGTGCAATCTAAATTAGGATC 540 consensus_13950#1 TGTTGCAGCATAAATTAAACAGGCAAACTTTTCAAGACCAGTGCAATTTAAATTAGGATC 64 *************** ******************************* ************ consensus_13950#0 AACGTTTTTAGTCTTTGATCACAGCAAGTTGTCTTTGAAAGATAAGGCCGGGCTCAATAG 600 consensus_13950#1 AACGTTTT-AGTTTTTGATCACAGCAAGTTGTTTTTTAAAAATAAGGCCGGGCTCAATAG 123 ******** *** ******************* *** *** ******************* consensus_13950#0 GGAAAAGAGAAGAGCCTTCTTATATTTTGGTAGATAAACAATTGGAAATTTTGGTGTGTT 660 consensus_13950#1 GGAAAAAAAAAGACCCTTTTTATATTTTGGTAAATAAACAATTGGAAATTTTGGGGTGTT 183 ****** * **** **** ************* ********************* ***** consensus_13950#0 CTGCTTGTTACTTTTCCAGTAAAATGATTTGCATGGTGAAATGCCGTTTTGTAATCTGAA 720 consensus_13950#1 CGGCTTGTTACTTTTCCAGTAAAATAATTTGCATGGTGAAAACCCGTTTTGTAATCTGAA 243 * *********************** *************** ***************** consensus_13950#0 TAATAATGTACAGTTGTTTTGGTTTAATTAATAGATGTAAATTTGTCTAAAAAAAAAAAA 780 consensus_13950#1 AAAAAATGGACAGTTGTTTTGGTTTTAAAAAAAAAAAAAAAAA----------------- 286 ** **** **************** * ** * * *** consensus_13950#0 AAAAAAAAAAAAA 793 consensus_13950#1 ------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||