These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13954#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1722 fasta sequence [CTTCTCCTCCGTCTTCCTCGCGTGCAGAATAACCACTTCACCGCCGGATCTCACGGCGCCCCAAGTTTAGGCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAGGAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAAACGAGCAGAGAACTTGATCCGTGGAATCTTAGCAGGAAACATATTTGACTTAGGATCTGCACAGCTTGCAGAAGTTTTTGCTAAAGACGGTATGTCCTTCTTAGCGAGTTGCCAGAATCTTGTATCTCGACCTTGGGTTATCGATGACCTGGATGCATTTCAAAATAAATGGACTAAGAAATCTTGGGAAAAGGCTGTTATTTTTGTTGATAATTCTGGCGCTGATATCATCTTGGGCATATTACCATTTGCAAGGGAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGACATGCCATCAATCAATGATGTCACTTA-CCCAGAGCTTGTTGAAATTATAAACAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTT-GGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCACAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTGATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACTAGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTTCGGATTTGGGAAGAAGATGAATTTTGTAACAGATTGCGTGGTTGCTGCCAAAAGATTGA] [+] EMBL CF310065 [CTTCTCCTCCGTCTTCCTCGCGTGCAGAATAACCACTTCACCGCCGGATCTCACGGCGCCCCAAGTTTAGGCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAGGAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCA ] [+] EMBL AK063974 [ TAACCACTTCACCGCCGGATCTCACGGCGCCCCAAGTTTAGGCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAGGAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAAACGAGCAGAGAACTTGATCCGTGGAATCTTAGCAGGAAACATATTTGACTTAGGATCTGCACAGCTTGCAGAAGTTTTTGCTAAAGACGGTATGTCCTTCTTAGCGAGTTGCCAGAATCTTGTATCTCGACCTTGGGTTATCGATGACCTGGATGCATTTCAAAATAAATGGACTAAGAAATCTTGGGAAAAGGCTGTTATTTTTGTTGATAATTCTGGCGCTGATATCATCTTGGGCATATTACCATTTGCAAGGGAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGACATGCCATCAATCAATGATGTCACTTA CCCAGAGCTTGTTGAAATTATAAACAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTT GGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCACAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTGATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACTAGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTTCGGATTTGGGAAGAAGATGAATTTTGTAACAGATTGCGTGGTTGCTGCCAAAAGATTGA] [+] EMBL CF314109 [ CACCGCCGGATCTCACGGCGCCCCAAGTTTAGGCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAGGAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAAACGAGCAGAGAACTTGATCC ] [+] EMBL CB630399 [ CGCATCTCACGGCGCCCCAAGTTTAGGCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAGGAGGAGCGATCCGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTA ] [+] EMBL CF312670 [ GCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAGGAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAAACGAGCAGAGAACTTGATCC ] [+] EMBL AK099286 [ CCGCCGACGAGCAGGAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTTCCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTTCGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCTCAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCCCGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAAACGAGCAGAGAACTTGATCCGTGGAATCTTAGCAGGAAACATATTTGACTTAGGATCTGCACAGCTTGCAGAAGTTTTTGCTAAAGACGGTATGTCCTTCTTAGCGAGTTGCCAGAATCTTGTATCTCGACCTTGGGTTATCGATGACCTGGATGCATTTCAAAATAAATGGACTAAGAAATCTTGGGAAAAGGCTGTTATTTTTGTTGATAATTCTGGCGCTGATATCATCTTGGGCATATTACCATTTGCAAGGGAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGACATGCCATCAATCAATGATGTCACTTA CCCAGAGCTTGTTGAAATTATAAACAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTT GGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCACAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTGATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACTAGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTT ] [+] EMBL CF311268 [ GCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAAACGAGCAGAGAACTTGATCCGTGGAATCTTAGCAGGAAACATATTTGACTTAGGATCTGCACAGCTTGCAGAAGTTTTTGCTAAAGACGGTATGTCCTTCTTAGCGAGTTGCCAGAATCTTGTATCTCGACCTTGGGTTATCGATGACCTGGATGCATTTCAAAATAAATGGACTAAGAAATCTTGGGAAAAGGCTGTTATTTTTGTTGATAATTCTGGCGCTGATATCATCTTGGGCATATTACCATTTGCAAGGGAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGACATGCCATCAATCAATGATGTCACTTA CCCAGAGCTTGTTGAAATTATAAACAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTT GGCAAATGATGCTGACTTAGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCACAAATGAAATG ] [+] EMBL C27794 [ AAATAAATGGACTAAGAAATCTTGGGAAAAGGCTGTTATTTTTGTTGATAATTCTGGCGCTGATATCATCTTGGGCATATTACCATTTGCAAGGGAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGACATGCCATCAATCAATGATGTCACTTA CCCAGAGCTTGTTGAAATTATAAACAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTTNGGC AATGATGCTGACTTGG CGGTCTAGA ] [-] EMBL CF314108 [ GAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGACATGCCATCAATCAATGATGTCACTTACCCCAGAGCTTGTTGAAATTATAAACAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTT GGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCACAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAA ] consensusID : consensus_13954#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 675 fasta sequence [TCAATGATGTCCACTTTACCCAGAGCTTGTTGAAATTATAACCAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTTGGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCNCAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAANTCGAACATTGTTTGATACCGGTTCTGCTNAAAAAAAAAAAAAA] [+] EMBL AU092686 [TCAATGATGTCCACTTTACCCAGAGCTTGTTGAAATTATAACCAAGCTCAAGGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGGTAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTTGGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCAACCTATATGCNCAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAANTCGAACATTGTTTGATACCGGTTCTGCTNAAAAAAAAAAAAAA] consensusID : consensus_13954#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [GTCNCCGGAACTAGCTTATTTGGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCACCCTATATGCACAAATGAATGTGACCCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTNCGGAACTTTTAATTCGTNATTNCTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTGATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACTAGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTTCGGATTTGGGAAGAAGATGAATTTTGTAACAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101066 [GTCNCCGGAACTAGCTTATTTGGCAAATGATGCTGACTTGGTCGTTCTAGAAGGCATGGGAAGAGCAATTGAAACCACCCTATATGCACAAATGAATGTGACCCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTNCGGAACTTTTAATTCGTNATTNCTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTGATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACTAGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTTCGGATTTGGGAAGAAGATGAATTTTGTAACAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_13954#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [CTTGGTCGTTTTAGAAGGCACTGGGACGACCCATTGATAACCCACCCTATATGCCCCAATGAAATGTGACTCGATTAAGATCGGAATGGTTAAACATCCTGAAGTGGCNCCATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCGATGAGGCCTAAACTTTGATAACATCAGACACACTGCGGTTGCTTTATTTCGTTTTCNACTGGTGCGAGGCTACCCTGAACATATCACATGTGCTCGTCCCNTTCATATTAATACCCAGGAAAACCCTTTTTAGGGAATCCCATTACGGAACTTTTAATTCGTATTGCCCTACGTCNCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTCCGATTCAGATTAATAACCCCCGTTCAACTAAAGTACCCCCCTTTTTATCNTGTTATTTAAAAAAAAAA] [+] EMBL BM038785 [CTTGGTCGTTTTAGAAGGCACTGGGACGACCCATTGATAACCCACCCTATATGCCCCAATGAAATGTGACTCGATTAAGATCGGAATGGTTAAACATCCTGAAGTGGCNCCATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCGATGAGGCCTAAACTTTGATAACATCAGACACACTGCGGTTGCTTTATTTCGTTTTCNACTGGTGCGAGGCTACCCTGAACATATCACATGTGCTCGTCCCNTTCATATTAATACCCAGGAAAACCCTTTTTAGGGAATCCCATTACGGAACTTTTAATTCGTATTGCCCTACGTCNCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTCCGATTCAGATTAATAACCCCCGTTCAACTAAAGTACCCCCCTTTTTATCNTGTTATTTAAAAAAAAAA] consensusID : consensus_13954#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 398 fasta sequence [TGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATGTCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCTGT] [-] EMBL CF312671 [TGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCAATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGATAACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGAACATGTCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGGCATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGTGCCTTTTCATCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCGATTCAGATTAATAATAACAGTTCAACTAAAAAAAAAAAAAAAAAAAAACACTGTCATGCTGT] consensusID : consensus_13954#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 281 fasta sequence [CTTTAATATGGAGTTTTCACTCATTCTTGGTCTCAAAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATNATGAGATTGAAGATGATNGAAAACGAGCAGAGGAACTTNGATCCGTGGAATC] [+] EMBL C71962 [CTTTAATATGGAGTTTTCACTCATTCTTGGTCTCAAAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAACCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGTCCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAAGGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATNATGAGATTGAAGATGATNGAAAACGAGCAGAGGAACTTNGATCCGTGGAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CTTCTCCTCCGTCTTCCTCGCGTGCAGAATAACCACTTCACCGCCGGATCTCACGGCGCC 60 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CCAAGTTTAGGCGGTTACCTAACCACCCCACGAATCCCAGCCGCCGCCGCCGACGAGCAG 120 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 GAGGAGCGATCTGACTAGTAAGCCGGAGCACATGGAGAGCTCGTCGCCGTCGGTGCCGTT 180 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CCCGCTGCTGCAGGCGCCGGTGGAGAGCACGTACAGGGCCTGCACCATCCCCTACCGCTT 240 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CGCCTCCGACAACCCGCGAAAGGCCACCCCCGTCGAGATCCAGTGGATCGACCTCTTCCT 300 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CAACTCCGTCCCCTCCTTCAGGCAGCGCGCGGAGAACGACCCCACGGTGCCCGATGCGCC 360 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CGCCAAGGCCGAGAAGTTTGCCCAGAGGTACACTGCAATGCTCGAGGAGTTGAAGAAGAA 420 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CCCAGAGAGTAATGGAGGGCCACCAGATTGCATTCTTCTTTGCAGGCTTCGTGAGCTAGT 480 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CCTTAGAGAACTGGGATTTAGGGATATATTCAAGAAGGTTAAGGATGAGGAGAATGCTAA 540 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 GGCTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATGATGAGATTGAAGATGATGGAAA 600 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 ACGAGCAGAGAACTTGATCCGTGGAATCTTAGCAGGAAACATATTTGACTTAGGATCTGC 660 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 ACAGCTTGCAGAAGTTTTTGCTAAAGACGGTATGTCCTTCTTAGCGAGTTGCCAGAATCT 720 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 TGTATCTCGACCTTGGGTTATCGATGACCTGGATGCATTTCAAAATAAATGGACTAAGAA 780 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 ATCTTGGGAAAAGGCTGTTATTTTTGTTGATAATTCTGGCGCTGATATCATCTTGGGCAT 840 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 ATTACCATTTGCAAGGGAATTGCTCCGACATGGCACAAAGGTGATTCTTGCTGCCAATGA 900 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ---------TCAATGATGTCCACTTTACCCAGAGCTTGTTGAAATTATAACCAAGCTCAA 51 consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 CATGCCATCAATCAATGATGTCACTTACCCAGAGCTTGTTGAAATTATAAACAAGCTCAA 960 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ------------------------------------------------------------ consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 GGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGG 111 consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 GGATGAAAATGGAAAGCTTGCAGGTGTGGATGCATCTGACCTACTCGTTGCCAACTCCGG 1020 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ---------------------------------GTCNCCGGAACTAGCTTATTTGGCAAA 27 consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 TAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTTGGCAAA 171 consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 TAACGATTTGCCAGTAATTGATTTGTCCAGTGTGTCACCAGAACTAGCTTATTTGGCAAA 1080 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 TGATGCTGACTTGGTCGTTCTAGAAGGCA-TGGGAAGAGCAATTGAAA--CCACCCTATA 84 consensus_13954#3 ---------CTTGGTCGTTTTAGAAGGCACTGGGACGACCCATTGATAACCCACCCTATA 51 consensus_13954#1 TGATGCTGACTTGGTCGTTCTAGAAGGCA-TGGGAAGAGCAATTGAAA--CCAACCTATA 228 consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 TGATGCTGACTTGGTCGTTCTAGAAGGCA-TGGGAAGAGCAATTGAAA--CCAACCTATA 1137 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 TGCACAAATGAA-TGTGACCCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCA 143 consensus_13954#3 TGCCCCAATGAAATGTGACTCGATTAAGATCGGAATGGTTAAACATCCTGAAGTGGCNCC 111 consensus_13954#1 TGCNCAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCA 288 consensus_13954#4 --------TGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCA 52 consensus_13954#0 TGCACAAATGAAATGTGACTCGATTAAGATCGGAATGGTAAAACATCCTGAAGTGGCGCA 1197 consensus_13954#5 -------------------------------------CTTTAATATGGAGTTTTCACTC- 22 * ** ** * * * * consensus_13954#2 ATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGAT 203 consensus_13954#3 ATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCGATGAGGCCTAAACTTTGAT 171 consensus_13954#1 ATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGAT 348 consensus_13954#4 ATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGAT 112 consensus_13954#0 ATTTTTGGGTGGGAGGCTTTATGATTGCGTCTTCAAATTCAATGAGGCCTAAACTTTGAT 1257 consensus_13954#5 ATTCTTGGTCTCAAAGGTACACTGCAATGCTCGAGGAGTTGAAGAAG----AACCCAGAG 78 *** **** * * * * * * * * ** * *** ** consensus_13954#2 AACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGA 263 consensus_13954#3 AACATCAGACACAC-TGCGGTTGCTTTATTTCGTTTTCNACTGGTGCGAGGCTACCCTGA 230 consensus_13954#1 AACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGA 408 consensus_13954#4 AACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGA 172 consensus_13954#0 AACATCAGACACACATGCGGTTGCTTTATTTCGTTTTCAACTGGTGCGAGGCTACACTGA 1317 consensus_13954#5 AGTAATGGAGGGCCACCAGATTGCATTCTTC--TTTGCAGGCTTCGTGAGCTAGTCCTTA 136 * * ** * * **** ** ** *** * * *** ** * consensus_13954#2 ACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGG 323 consensus_13954#3 ACATATCACATGTGCTCGTCCCNTTCATATTAATACCCAGGAAAAC-------------- 276 consensus_13954#1 ACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGG 468 consensus_13954#4 ACATGTCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGG 232 consensus_13954#0 ACATATCACATGTGCTCGTCCCTTTCATATTAATAGCAAGGAAAATAAGTTAGATCATGG 1377 consensus_13954#5 GAGAACTGGGATTTAGGGATATATTCAAG--AAGGTTAAGGATGAGGAG----------- 183 * * **** ** **** * consensus_13954#2 CATTTTTAGGGAATGCAATTNCGGAACTTTTAATTCGTNAT-TNCTACGT-GCCTTTTCA 381 consensus_13954#3 CCTTTTTAGGGAATCCCATTACGGAACTTTTAATTCGTATTGCCCTACGTCNCCTTTTCA 336 consensus_13954#1 CATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGT-GCCTTTTCA 527 consensus_13954#4 CATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGT-GCCTTTTCA 291 consensus_13954#0 CATTTTTAGGGAATGCAATTACGGAACTTTTAATTCGTATTGCACTACGT-GCCTTTTCA 1436 consensus_13954#5 -AATGCTAAGG-------CTATGTCACTCTTTGAGGGCGTTGTTCAGCGAAATNATGAGA 235 * ** ** * * *** ** * * * ** * * consensus_13954#2 TCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCG-ATTCAGATTAATAA 440 consensus_13954#3 TCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTCCG-ATTCAGATTAATAA 395 consensus_13954#1 TCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCG-ATTCAGATTAATAA 586 consensus_13954#4 TCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCG-ATTCAGATTAATAA 350 consensus_13954#0 TCTAGGTAGCGGAATAGTAAAAAGGAAAAAAAAATCCCTTCTGCG-ATTCAGATTAATAA 1495 consensus_13954#5 TTGAAGATG----ATNGAAAACGAGCAGAGGAACTTNGATCCGTGGAATC---------- 281 * * * * ** * *** * * * ** * ** * * ** consensus_13954#2 TAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTG 500 consensus_13954#3 CCCCCGTTCAACTAAAGTACCCCCCT-TTTTATCNTGTTATTTAAAAAAAAAA------- 447 consensus_13954#1 TAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAANTCGAACATTGTTTG 646 consensus_13954#4 TAACAGTTCAACTAAAAAA-----------------AAAAAAAAAAAAAAACACTGTC-- 391 consensus_13954#0 TAACAGTTCAACTAAAGTACCTCCGTGTTTTATCATGTTATTTAATTCGAACATTGTTTG 1555 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 ATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACT 560 consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ATACCGGTTCTGCTNAAAAAAAAAAAAAA------------------------------- 675 consensus_13954#4 ATGCTGT----------------------------------------------------- 398 consensus_13954#0 ATACCGGTTCTGCTTCTGATAAAAGTGCCATTGAAGATCAGTTGTGTTCTGTATTATACT 1615 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 AGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTTCGGATTTGGGAA 620 consensus_13954#3 ------------------------------------------------------------ consensus_13954#1 ------------------------------------------------------------ consensus_13954#4 ------------------------------------------------------------ consensus_13954#0 AGCCTAACTACTTCGCAGAAAAATGGGTGTATAGTGTAGCCTTTACTTCGGATTTGGGAA 1675 consensus_13954#5 ------------------------------------------------------------ consensus_13954#2 GAAGATGAATTTTGTAACAAAAAAAAAAAAAAAAAAAAAAAAAA--- 664 consensus_13954#3 ----------------------------------------------- consensus_13954#1 ----------------------------------------------- consensus_13954#4 ----------------------------------------------- consensus_13954#0 GAAGATGAATTTTGTAACAGATTGCGTGGTTGCTGCCAAAAGATTGA 1722 consensus_13954#5 ----------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||