These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13956#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1223 fasta sequence [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA-CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT-CCATGCGCTGTTCA-ACAACAACAGCGCTTATCAT-GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT-CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT-TTACACTGTATGCAGCTATGCAGTAAGCCAGTAACT] [+] EMBL AK103058 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT TTACACTGTATGCAGCTATGCAGTAAGCCAGTAACT] [+] EMBL CB661187 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGC ] [+] EMBL AU063911 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTG CGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCANCAAGCCTTCCAGGTCGCCGTCTCGCTCAACCTCTTCGCGGTTATTNGTGATGAAA TGATATTGAACAGAAGCAA CTTCTGCCCTTGTGANATTGCTGCAATTTGCNATTGCAATGTTCGTAATGG ] [+] EMBL CA998254 [ CCTTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACACCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAA ] [-] EMBL CB661188 [ ATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCCCCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATATGGTACACTGTATGCAGCTATG ] [+] EMBL AU085865 [ CCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTNATTTTGGACACCCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGANTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT TTACACTGTAaaaa ] [-] EMBL CB681344 [ GGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACA CCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAT TTACACTGTATGCATTTAAAGGGTAAGCCAGTAnc ] [+] EMBL AK059700 [ GGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTCCCTGGTAACATCCT CCATGCGCTGTTCA ACAACAACAGCGCTTATCAT GACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCT CCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATA ] [+] EMBL BM419144 [ ATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCCATGCGCTGTTCAGACAACAACAGCGCTTATCATGGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATGTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCTCCCTTGTACCAAGGTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGAGATTGGCTGCATGTATTGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATAC TTNCACTGTAaaaaaaaaa ] consensusID : consensus_13956#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [AGCTGCTCTATGCTGATTGAAGTATATCAAAATGGTGTCCATGGAAAATAAACTGATATGCATGAATGTCCAGTTGTACGAATGCTTATGTGTCTTGAACCAATATTGTATCTTGACATTTCTTTTGGAGTTTACCTAATAGCTTTACTTGTATGGTTCTCAAACTGTTGAACTTCTATCGAACTGCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTAGAGTGATGTTTTTCTTGTTCTCTAAAAAAACAACAAAAAAGA] [-] EMBL CB682673 [AGCTGCTCTATGCTGATTGAAGTATATCAAAATGGTGTCCATGGAAAATAAACTGATATGCATGAATGTCCAGTTGTACGAATGCTTATGTGTCTTGAACCAATATTGTATCTTGACATTTCTTTTGGAGTTTACCTAATAGCTTTACTTGTATGGTTCTCAAACTGTTGAACTTCTATCGAACTGCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATGGATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGTATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTAGAGTGATGTTTTTCTTGTTCTCTAAAAAAACAACAAAAAAGA] consensusID : consensus_13956#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCACCCTCTTCGCGGTAATCCTCCTCGCCGCCGGTTATCTCTTCCAGCATGCGGGCACCCGAGTTATTGGTTGGATGAATTGTTTCATTTTTTAGCTTTGTGGTAATCTGATGCGAAACATGCAGAATCGCTTTTTTTTTATTATTATTTTCCTTCAGAAGTGCAGAAGCAGAGATGCAAATACTTGGGGTGAATTTTGAAGTAAAATAGGCAAATTGTTGTACATGCGTCTTGATTAGATTGTTTTGGAGAACAATGAAGTAAAAATTGCTTCACACGCATTTCGATTAGATTGTTTTGGCCCACCATCACCGT] [+] EMBL CB682672 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTCGCCGTCTCGCACCCTCTTCGCGGTAATCCTCCTCGCCGCCGGTTATCTCTTCCAGCATGCGGGCACCCGAGTTATTGGTTGGATGAATTGTTTCATTTTTTAGCTTTGTGGTAATCTGATGCGAAACATGCAGAATCGCTTTTTTTTTATTATTATTTTCCTTCAGAAGTGCAGAAGCAGAGATGCAAATACTTGGGGTGAATTTTGAAGTAAAATAGGCAAATTGTTGTACATGCGTCTTGATTAGATTGTTTTGGAGAACAATGAAGTAAAAATTGCTTCACACGCATTTCGATTAGATTGTTTTGGCCCACCATCACCGT] consensusID : consensus_13956#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCGACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGGTCGTTATGGATACATAGCAGTACTTCATGCACAGATACCTGCGCGTCAACAAGTTCCTATATGAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTGTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGGCTCTGGTATGACACCACGGAC] [+] EMBL CB681343 [GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAGGCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCCTTCCAGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCGACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGGTCGTTATGGATACATAGCAGTACTTCATGCACAGATACCTGCGCGTCAACAAGTTCCTATATGAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTGTGGAGCTCTTTACAACCATCCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGGCTCTGGTATGACACCACGGAC] consensusID : consensus_13956#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 402 fasta sequence [TCGTGCCGAATTCGGCACGAGCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAAACCTTCTGCCCTTGTGATATTGCTGCCAATTTGGCCATTGGCAATGTTTCCTTTATGGGATACATGGCAGTACTTTCATGCACAGATACCTTGCACATTCAACAAAGTTCCTATATTTAACATTTTCCCACTTCCAAAGGCACCCACACCTCCTTGTTATTTCCCTTTAATTCCCTTTTGGGAAACCTCCTTTATAAACCATTTCCCCCTTTTGAAAGGGGTCTTTTATTTTTGGGGAAAACCCCAATGGGGGGGGGGGGGGCCCCTCCTCCAATTTCCTCCCGGTTCCCCTCGGGGTTTTGTAAACCCCCCCGGGGAAAAATCCCCC] [+] EMBL AA754144 [TCGTGCCGAATTCGGCACGAGCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAACAGAAGCAAACCTTCTGCCCTTGTGATATTGCTGCCAATTTGGCCATTGGCAATGTTTCCTTTATGGGATACATGGCAGTACTTTCATGCACAGATACCTTGCACATTCAACAAAGTTCCTATATTTAACATTTTCCCACTTCCAAAGGCACCCACACCTCCTTGTTATTTCCCTTTAATTCCCTTTTGGGAAACCTCCTTTATAAACCATTTCCCCCTTTTGAAAGGGGTCTTTTATTTTTGGGGAAAACCCCAATGGGGGGGGGGGGGGCCCCTCCTCCAATTTCCTCCCGGTTCCCCTCGGGGTTTTGTAAACCCCCCCGGGGAAAAATCCCCC] consensusID : consensus_13956#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence [TTAACCCTTTTGGGGAGGGGGGTTCTGCCCTTGGTGACCCCACAGGGTATAGTGGAGTAAATTAGTGGTACTGATGATGCAAAGAATGATCTAAAGCACCTAAGATCCACCTTGGGATCCTGTTTCCTGGAGATTGGCTGCATGGTATTGGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATATTTACACTGTATGCAGCTATGCAGTAAGCCAGTAACTTTTGTGGTGCCAAAAAAAAAA] [+] EMBL BI811929 [TTAACCCTTTTGGGGAGGGGGGTTCTGCCCTTGGTGACCCCACAGGGTATAGTGGAGTAAATTAGTGGTACTGATGATGCAAAGAATGATCTAAAGCACCTAAGATCCACCTTGGGATCCTGTTTCCTGGAGATTGGCTGCATGGTATTGGAGCTTACATGCATGCCAATGTTAACAAGAGAAGATGATATTTACACTGTATGCAGCTATGCAGTAAGCCAGTAACTTTTGTGGTGCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGTTCGTTGTGG 60 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATTGGGGCGTCG 120 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCGGGGCTGTAC 180 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 CTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAGGGAGGAGGAG 240 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GCCGCCAAGAACGTCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCGTCCAGCAGGCC 300 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 TTCCAGGTCGCCGTCTCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGATATTGAA 360 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 CAGAAGCAACCTTCTGCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGTTCGTTATG 420 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GATACATGGCAGTACTTCATGCACAGATACATGCACATCAACAAGTTCCTATATAAACAT 480 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ATCCACTCCAAGCACCACACTCTTGTAGTCCCTTATTCCTTTGGAGCTCTTTACAACCAT 540 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 CCTCTTGAGGGTCTTATTTTGGACACCATTGGTGGTGCTCTCTCATTCCTCGTCTCTGGT 600 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ATGACACCACGGACATCCATATTCTTTTTCTCGTTCGCAACCATCAAGACAGTGGATGAT 660 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 CATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCT 720 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 TATCATGACATTCATCATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTT 780 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------------------------------------ consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GTCATTTGGGACAAGATACTTGGAACTTACATGCCTTACTCTATCGAGCACAGAAAAGGA 840 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ------------------------------AGCTGCTCTATGCTGATTGAAGTATATCAA 30 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 GGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTGATTAG 900 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 AATGGTGTCCATGGAAAATAAACTGATATGCATGAATGTCCAGTTGTACGAATGCTTATG 90 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 TGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTG 960 consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 TGTCTTGAACCAATATTGTATCTTGACATTTCTTTTGGAGTTTACCTAATAGCTTTACTT 150 consensus_13956#4 ----------------------------------------------------------TC 2 consensus_13956#0 GTGTGAAATTATCACCTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTC 1020 consensus_13956#5 -----------------------------------------------------------T 1 consensus_13956#2 ---------GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGT 51 consensus_13956#3 ---------GCGCTGCGCCGTGGTAAGCCCATCTCTCTCCCGGCCTTCCCGGCTCGACGT 51 consensus_13956#1 GTATGGTTCTCAAACTGTTGAACTTCTATCGAACTGCAGGTTATTGGTGATGAAAGTGAT 210 consensus_13956#4 GTGCCGAATTCGGCA---CGAGCGCTCACCCTCTTCGCGGTTATTGGTGATGAAAGTGAT 59 consensus_13956#0 TGTTACCTTTTGGGAGG--GG--TTCT--CCTTG------TACCAAGGTATAGTG-AGTA 1067 consensus_13956#5 TAACCCTTTTGGGGAGG--GGGGTTCTGCCCTTGGTGACCCCACAGGGTATAGTGGAGTA 59 consensus_13956#2 TCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATT 111 consensus_13956#3 TCGTTGTGGGGGGCGTGTTTTGCGCCCGAGGATTGGTGGGTTGGCGGGGGGATGGGGATT 111 * consensus_13956#1 ATTGAACAGAAGCAA-CCTTCTGCCCTT--GTGATATTGCTGC-AATTTG-CCATTG-CA 264 consensus_13956#4 ATTGAACAGAAGCAAACCTTCTGCCCTT--GTGATATTGCTGCCAATTTGGCCATTGGCA 117 consensus_13956#0 AATTAGTG-TACTAT--AT-CAAAGAAT--A--CTAAAGCAC-TAAGATCCACTT---GG 1115 consensus_13956#5 AATTAGTGGTACTGATGATGCAAAGAAT--GATCTAAAGCACCTAAGATCCACCTTG-GG 116 consensus_13956#2 GGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCG 171 consensus_13956#3 GGGGCGTCGGACGAGCTGCTGGGCACGTTCGTGCCGATCGCCGTGTACTGGCTCTACTCG 171 * * * * consensus_13956#1 ATGTT--CGTTATGG-ATACATGGCAGTACTT-CATGCACAGATACAT-GCACAT-CAAC 318 consensus_13956#4 ATGTTTCCTTTATGGGATACATGGCAGTACTTTCATGCACAGATACCTTGCACATTCAAC 177 consensus_13956#0 ATC-TGTTTCCTGGAGATTGGCTGCATG-TATTG-AGCTTACATGCATGCCAATGTTAAC 1172 consensus_13956#5 ATCCTGTTTCCTGGAGATTGGCTGCATGGTATTGGAGCTTACATGCATGCCAATGTTAAC 176 consensus_13956#2 GGGCTG-TACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAG 230 consensus_13956#3 GGGCTG-TACCTCGCGCTGGACGGCGTGGAGCGGCTGGACGTGTACCGGCTGCACCCCAG 230 * * * ** * * * * consensus_13956#1 AA-GTTCCTATATA-AACATAT--CCACTCCAAGCACCACACTCTTGTAGTCCCTTATTC 374 consensus_13956#4 AAAGTTCCTATATTTAACATTTTCCCACTTCCAAAGGCACCCACACCTCCTTGTTATTTC 237 consensus_13956#0 AA-----GAGAAGATGATATTT--ACACTGTATGCAGC-TATGCAGTAAGCCAGTAACT- 1223 consensus_13956#5 AA-----GAGAAGATGATATTT--ACACTGTATGCAGC-TATGCAGTAAGCCAGTAACTT 228 consensus_13956#2 GGAGGAGGAGGCCGCCAAGAACG-TCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCG 289 consensus_13956#3 GGAGGAGGAGGCCGCCAAGAACG-TCGTCTCCAGGGGCACCGTCGTCAGGGGCGTCCTCG 289 * * * * * consensus_13956#1 CTTTGGAGCTCTTTACAACCATCCTCTTGAGGGTC--TTATTTTGGACACCATTGGTGGT 432 consensus_13956#4 CCTTTAATTCCCTTTTGGGAAACCTCCTTTATAAA--CCATTTC--CCCCTTTTGAAAGG 293 consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 TTGTGGTGCCAAAAAAAAAA---------------------------------------- 248 consensus_13956#2 TCCAGCAGGCCTTCCAGGTCGCCGTCTCGCACCCTCTTCGCGGTAATCCTCCTCGCCGCC 349 consensus_13956#3 TCCAGCAGGCCTTCCAGGTTATTGG------------TGATGAAAGTGATATTGAACAGA 337 consensus_13956#1 GCTCTCTCATTCCTC-GT-----CTCTGGTATGACACCACGGACATCCATATTCTTTTTC 486 consensus_13956#4 GGTCTTTTATTTTTG-GGGAAAACCCCAATGGGGGGGGGGGGGGCCCCTCCTCCAATTTC 352 consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 GGTTATCTCTTCCAGCATGCGGGCACCCGAGTTATTGGTTGGATGAATTGTTTCATTTTT 409 consensus_13956#3 AGCGACCTTCT-----------GCCCTTGTGATATTGCTGCAATTTGCCATTGCAATGGT 386 consensus_13956#1 TCGTTCGCAACCATCAAGACAGTGGATGATCATTGTGGTCTGTGGCTTCCTGGTAACATC 546 consensus_13956#4 CTCCCGGTTCCCCTCGGGGTTTTGTA-AACCCCCCCGGGGAAAAATCCCCC--------- 402 consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 TAGCTTTGT---GGTAATCTGATGCGAAACATGCAGAATCGCTTTTTTTTTATTATTATT 466 consensus_13956#3 C-GTTATG----GATACATAGCAGTACTTCATGCACAGATACCTGCGCGTCAACAA-GTT 440 consensus_13956#1 CTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCATCATCAGCTCTATGGA 606 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 TTCCTTCAGAAGTGCAGAAGCAGAGATGCAAATACTTGGGGTGAATTTTGAAGTAAAATA 526 consensus_13956#3 CCTATATGAACATATCCACTCCAAGCACCACACTCTTGTAGTCCCTT----ATTCCTGTG 496 consensus_13956#1 AACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTAC 666 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 GGCAAATTGTTGTACATGCGTCTTGATTAGATTGTTTTGGAGAACAATGAAGTAAAAATT 586 consensus_13956#3 GAGCTCTTTACAACCATCC-TCTTGAGGGTCTTATTTTGGACACCATTG--GTGGTGCTC 553 consensus_13956#1 ATGCCTTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTC 726 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 GCTTCACACGCATTTCGATTAGATTGTTTTGGCCCACCATCACCGT-------------- 632 consensus_13956#3 TCTCATTCCTCGGCTCTGGTATGACACCACGGAC-------------------------- 587 consensus_13956#1 AACATAGCAGAGCAGACCAAGACTGATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTG 786 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 TGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCACCTTGTTCGTAGAGTG 846 consensus_13956#4 ------------------------------------------------------------ consensus_13956#0 ------------------------------------------------------------ consensus_13956#5 ------------------------------------------------------------ consensus_13956#2 ------------------------------------------------------------ consensus_13956#3 ------------------------------------------------------------ consensus_13956#1 ATGTTTTTCTTGTTCTCTAAAAAAACAACAAAAAAGA 883 consensus_13956#4 ------------------------------------- consensus_13956#0 ------------------------------------- consensus_13956#5 ------------------------------------- consensus_13956#2 ------------------------------------- consensus_13956#3 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||