cluster # 13963

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Oryza sativa
cluster # 13963 cluster # 13963 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13963#0 length = 874 sequences # 11
consensus_13963#1 length = 503 sequences # 1

consensus_13963#2 length = 431 sequences # 1
consensus_13963#3 length = 235 sequences # 1

consensusID : consensus_13963#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 11
consensus length = 874
fasta sequence

                              [TCGCCTCGCCTCGTCCCCAATTGAGCAAACCCTAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA-CGCCT-CCCAGGGAGGACGCAGCAATGCAACTA-CAGAGAATGTTG-CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA-AGGTACAACAGGCTCCACAAGCGGTGTTTAATT-GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC-TCGCTTGTGCCTGGTAT-ACTCGTAGCTAC-AGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGC-GTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGC-GCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTTGTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]

[+] EMBL AK105339             [TCGCCTCGCCTCGTCCCCAATTGAGCAAACCCTAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCGTAGCTAC AGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGC GTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGC GCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTTGTGGCTATGACATATTTATGCTGGGTTA                                                                                                                                                                                          ]
[+] EMBL CA756836             [        CCTCGTCCCCAATTGAGCAAACCCTAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCGTAGCTAC AGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGC GTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGC GCACACTCTANCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTTGTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN]
[+] EMBL OSC111671            [                CCAATTGAGCAAACCCTAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL C74154               [                           AACCCTAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGANGAGACAACN AGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGG TCGGCCTTGGAAGTC TCG TTGTGCCTGGTAT ACTCGTAGCTAC AGGAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[+] EMBL OS0674A              [                               CTAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCNCNCCCCCGCCGCCGCCGCTCTNCGTCGCCCTCGATCCCTCTNCNCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGATAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTNANAAGTTAAGACTGGAAATCGAGGNGACAACA NGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL C26840               [                                TAGCCGCCGCCGCCGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAACAGGCTCCACAAGCGGTGTTTAATTGGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTTGGNTTGTGCCTGGTATAATTGGTAGCTACAAGGAAGGCCCTAAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL C29126               [                                             CGATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTNTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCGTAGCTAC AGGAAGGCCCTCAAGGAGCATTTTGACAANCCGATCGTTTNGATGCCGCCGTATT NACATCT                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[+] EMBL C74356               [                                               ATCAATCTCCTAGCTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGG AATCGAGGAGACAACA AGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCG NGCTAC AGGAAGGnc                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL CA999815             [                                                                 GCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCCGCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAA CGCCT CCCAGGGAGGACGCAGCAATGCAACTA CAGAGAATGTTG CGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCGTAGCTAC AGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGC GTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTA                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI795438             [                                                                                                                                             CGATCCCTCTCC CCAATCGCCTCCCCAGGGAGGACGCAGCAATGCAACTACCAGAGAATGTTGCCGAGGAATATGGATGTTGATCTGGTTTGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACCACACAGGTACAACAGGCTCCACAAGCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCGTAGCTAC AGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGC GTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGC GCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCCATTAACTCTTATGTAAGACCCAATGAAGTCGTTTTCACCAAaaaaaaaa                                                                                                                                                                                                                    ]
[+] EMBL AU166749             [                                                                                                                                                                                            ACTA CAGAGAATGTTG CGAGGAATATGNATGGTGATCTGGGTNGGGTACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACA AGGTACAACAGGCTCCACAANCGGTGTTTAATT GGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTC TCGCTTGTGCCTGGTAT ACTCGTAGCTAC AGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGGTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGCGGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAAaa                                                                                                                                                                                                                          ]




>consensus_13963#0
TCGCCTCGCCTCGTCCCCAATTGAGCAAACCCTAGCCGCCGCCGCCGATCAATCTCCTAG
CTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCC
GCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAACGCCTCCCAGGGAGGACGCAGC
AATGCAACTACAGAGAATGTTGCGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAA
GAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACAAGGTACAACAGG
CTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCT
TGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATC
GTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTC
ACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGG
GTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTG
TTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTT
GTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN

consensusID : consensus_13963#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 503
fasta sequence

                              [ATGGTGATCTGGGTTGGGTNCGGGAAGAAATAGCTAANCTTGAAAAGTTANGACTGGAAATCGNGGAGACAACAAGGTACAACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCTTGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAANTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTTGTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTATTGTATGGGTTAAAAAAAA]

[+] EMBL AU092175             [ATGGTGATCTGGGTTGGGTNCGGGAAGAAATAGCTAANCTTGAAAAGTTANGACTGGAAATCGNGGAGACAACAAGGTACAACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCTTGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAANTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTTGTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTATTGTATGGGTTAAAAAAAA]




>consensus_13963#1
ATGGTGATCTGGGTTGGGTNCGGGAAGAAATAGCTAANCTTGAAAAGTTANGACTGGAAA
TCGNGGAGACAACAAGGTACAACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTG
CTGGGTTCGGCCTTGGAGGTCTCGCTTGTGCCTGGTATACTCGTAGCTACAGGAAGGCCC
TCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTG
AGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGA
CTCTGGCGTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGTAGCGCACACTCTA
GCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAANTCTTATGTAAGACCAA
ATGAAGTCGTTTTCACAAACAGCTTGTGGCTATGACATATTTATGCTGGGTTAAGTTGCT
GCTATTGTATGGGTTAAAAAAAA

consensusID : consensus_13963#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 431
fasta sequence

                              [ACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACAAGGTACAACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCTTGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCCCAAAAAAAAAAAAA]

[+] EMBL AU182784             [ACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACAAGGTACAACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCTTGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGGGTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCCCAAAAAAAAAAAAA]




>consensus_13963#2
ACGGGAAGAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACAAGGTA
CAACAGGCTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGG
TCTCGCTTGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAA
CCCGATCGTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGAT
CCAGCTCACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTG
ATTTGGGGTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTG
TGCCGTGTTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCCCAA
AAAAAAAAAAA

consensusID : consensus_13963#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 235
fasta sequence

                              [GCCTGGGTTGGGGATCCAGCTCNCTTATCCTTTTGTTGCCATGTAATAATGTTTGACTNTGGNGTATGGCATGTGATTTGGGGTAATGCTTGCAANAGCTAGCTAGCGCNCNCTNTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTNTTATGTAAGACCAAATGAAGTCGTTTTCNCAAACAGCTTGTGGCTATGCCCAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AU182138             [GCCTGGGTTGGGGATCCAGCTCNCTTATCCTTTTGTTGCCATGTAATAATGTTTGACTNTGGNGTATGGCATGTGATTTGGGGTAATGCTTGCAANAGCTAGCTAGCGCNCNCTNTAGCTTACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTNTTATGTAAGACCAAATGAAGTCGTTTTCNCAAACAGCTTGTGGCTATGCCCAAAAAAAAAAAAAAAAAAAAA]




>consensus_13963#3
GCCTGGGTTGGGGATCCAGCTCNCTTATCCTTTTGTTGCCATGTAATAATGTTTGACTNT
GGNGTATGGCATGTGATTTGGGGTAATGCTTGCAANAGCTAGCTAGCGCNCNCTNTAGCT
TACAGTATGTGCTTGTGCCGTGTTATGTTAGACCAATTAACTNTTATGTAAGACCAAATG
AAGTCGTTTTCNCAAACAGCTTGTGGCTATGCCCAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13963#0      TCGCCTCGCCTCGTCCCCAATTGAGCAAACCCTAGCCGCCGCCGCCGATCAATCTCCTAG 60
consensus_13963#2      ------------------------------------------------------------
consensus_13963#1      ------------------------------------------------------------
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      CTGCTGCCTACTATGGCGATGCGCTACCTCGCCGGTAAGCTGCGGGCCCCCGCCCCCGCC 120
consensus_13963#2      ------------------------------------------------------------
consensus_13963#1      ------------------------------------------------------------
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      GCCGCCGCTCTCCGTCGCCCTCGATCCCTCTCCGCCAACGCCTCCCAGGGAGGACGCAGC 180
consensus_13963#2      ------------------------------------------------------------
consensus_13963#1      ------------------------------------------------------------
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      AATGCAACTACAGAGAATGTTGCGAGGAATATGGATGGTGATCTGGGTTGGGTACGGGAA 240
consensus_13963#2      -----------------------------------------------------ACGGGAA 7
consensus_13963#1      ----------------------------------ATGGTGATCTGGGTTGGGTNCGGGAA 26
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      GAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACAAGGTACAACAGG 300
consensus_13963#2      GAAATAGCTAAACTTGAAAAGTTAAGACTGGAAATCGAGGAGACAACAAGGTACAACAGG 67
consensus_13963#1      GAAATAGCTAANCTTGAAAAGTTANGACTGGAAATCGNGGAGACAACAAGGTACAACAGG 86
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      CTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCT 360
consensus_13963#2      CTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCT 127
consensus_13963#1      CTCCACAAGCGGTGTTTAATTGGGTCTGTGTTTGCTGGGTTCGGCCTTGGAGGTCTCGCT 146
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      TGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATC 420
consensus_13963#2      TGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATC 187
consensus_13963#1      TGTGCCTGGTATACTCGTAGCTACAGGAAGGCCCTCAAGGAGCATTTTGACAACCCGATC 206
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      GTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTC 480
consensus_13963#2      GTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTC 247
consensus_13963#1      GTTTGGATGCCGCCGTATTCAACATCTTCGCCTGAGTAGCCTGGGTTGGGGATCCAGCTC 266
consensus_13963#3      --------------------------------------GCCTGGGTTGGGGATCCAGCTC 22
                                                             **********************

consensus_13963#0      ACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGG 540
consensus_13963#2      ACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGG 307
consensus_13963#1      ACTTATCCTTTTGTTGCCATGTAATAATGTTTGACTCTGGCGTATGGCATGTGATTTGGG 326
consensus_13963#3      NCTTATCCTTTTGTTGCCATGTAATAATGTTTGACTNTGGNGTATGGCATGTGATTTGGG 82
                        *********************************** *** *******************

consensus_13963#0      GTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTG 600
consensus_13963#2      GTAATGCTTGCAAGAGCTAGCTAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTG 367
consensus_13963#1      GTAATGCTTGCAAGAGCTAG-TAGCGCACACTCTAGCTTACAGTATGTGCTTGTGCCGTG 385
consensus_13963#3      GTAATGCTTGCAANAGCTAGCTAGCGCNCNCTNTAGCTTACAGTATGTGCTTGTGCCGTG 142
                       ************* ****** ****** * ** ***************************

consensus_13963#0      TTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTT 660
consensus_13963#2      TTATGTTAGACCAATTAACTCTTATGTAAGACCAAATGAAGTCGTTTTCCCAAAAAAAAA 427
consensus_13963#1      TTATGTTAGACCAATTAANTCTTATGTAAGACCAAATGAAGTCGTTTTCACAAACAGCTT 445
consensus_13963#3      TTATGTTAGACCAATTAACTNTTATGTAAGACCAAATGAAGTCGTTTTCNCAAACAGCTT 202
                       ****************** * **************************** **** *    

consensus_13963#0      GTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTNNNNNNNNNNNNNNNNNNNNNN 720
consensus_13963#2      AAAA-------------------------------------------------------- 431
consensus_13963#1      GTGGCTATGACATATTTATGCTGGGTTAAGTTGCTGCTATTGTATGGGTTAAAAAAAA-- 503
consensus_13963#3      GTGGCTATGCCCAAAAAAAAAAAAAAAAAAAAA--------------------------- 235
                                                                                   

consensus_13963#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 780
consensus_13963#2      ------------------------------------------------------------
consensus_13963#1      ------------------------------------------------------------
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 840
consensus_13963#2      ------------------------------------------------------------
consensus_13963#1      ------------------------------------------------------------
consensus_13963#3      ------------------------------------------------------------
                                                                                   

consensus_13963#0      NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 874
consensus_13963#2      ----------------------------------
consensus_13963#1      ----------------------------------
consensus_13963#3      ----------------------------------