cluster # 13965

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Oryza sativa
cluster # 13965 cluster # 13965 Sequences # 14 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_13965#0 length = 1408 sequences # 10
consensus_13965#1 length = 684 sequences # 1

consensus_13965#2 length = 654 sequences # 1
consensus_13965#3 length = 519 sequences # 2

consensusID : consensus_13965#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 10
consensus length = 1408
fasta sequence

                              [CGCCGCGCCAACAGAAACCTCT-TTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGATCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTAGGGGAGCATGTGGAAGGGTTCGCCGCCGGCGACCCGGTGGTGCCCACGTTCCTGGGCCAGTGCACCGAGTGCGTGGACTGCGCCTCGGAGCGGAGCAACGTGTGCTCCACGTACCGGTTCGCGGTGCGCCCCGGGATGCCGCGCGACGGCACCGCCCGCTTCCGCGACCGCCACGGCGCCCCGATCCACCACTTCCTCGGCGTCTCCAGCTTCAGCGAGTACACCGTCGTGGACGCCAACCAGGTCGTCCGCGTCGACCCCGCCGTGCCGCCCGCCACGGCCTCCCTCCTCAGCTGCGGCG-CCACCACCGGGGTCGGAGCAGCGTGGAAGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCGGCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACG-GCATTTGACCTTCT-GTTGCA-GGGGA-AGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTA-CAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAATCACTCTCTGAAAAAAAAAAG]

[+] EMBL AK067720             [CGCCGCGCCAACAGAAACCTCT TTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGATCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTAGGGGAGCATGTGGAAGGGTTCGCCGCCGGCGACCCGGTGGTGCCCACGTTCCTGGGCCAGTGCACCGAGTGCGTGGACTGCGCCTCGGAGCGGAGCAACGTGTGCTCCACGTACCGGTTCGCGGTGCGCCCCGGGATGCCGCGCGACGGCACCGCCCGCTTCCGCGACCGCCACGGCGCCCCGATCCACCACTTCCTCGGCGTCTCCAGCTTCAGCGAGTACACCGTCGTGGACGCCAACCAGGTCGTCCGCGTCGACCCCGCCGTGCCGCCCGCCACGGCCTCCCTCCTCAGCTGCGGCG CCACCACCGGGGTCGGAGCAGCGTGGAAGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCGGCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACG GCATTTGACCTTCT GTTGCA GGGGA AGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTA CAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAA                     ]
[+] EMBL AU055750             [       CCAACAGAAACCTCT TTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGATCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATTGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTANGGGAACATGTGGAAAGGTTCGCCGCCGG GACCCGGTGGTGCCCACGTTCCTGGGCCAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB662933             [          ACAGAAACCTCT TTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGATCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTAGGGGAGCATGTGGAAGGGTTCGCCGCCGGCGACCCGGTGGTGCCCACGTTCCTGGGCCAGTGCACCGAGTGCGTGGACTGCGCCTCGGAGCGGAGCAACGTGTGCTCCACGTACCGGTTCGCGGTGCGCCCCGGGATGCCGCGCGACGGCACCGCCCGCTTCCGCGACCGCCACGGCGCCCCGATCCACCACTTCCTCGGCGTCTCCAGCTTCAGCGAGTACACCGTCGTGGACGCCAACCAGGTCGTCCGCGTCGACCCCGCCGTGCCGCCCGCCACGGCCTCCCTCCTCAGCTGCGGCG CCACCACCGGGGTCGGAGCAGCGTGGAAGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCGGCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[+] EMBL CB653722             [               AACCTCTCTTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGATCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTACGGGAGCATGTGGAAGGGTTCGCCGCCGGCGACCCGGTGGTGCCCACGTTCCTGGGCCAGTGCACCGAGTGCGTGGACTGCGCCTCGGAGCGGAGCAACGTGTGCTCCACGTACCGGTTCGCGGTGCGCCCCGGGATGCCGCGCGACGGCACCGCCCGCTTCCGCGACCGCCACGGCGCCCCGATCCACCACTTCCTCGGCGTCTCCAGCTTCAGCGAGTACACCGTCGTGGACGCCAACCAGGTCGTCCGCGTCGACCCCGCCGTGCCGCCCGCCACGGCCTCCCTCCTCAGCTGCGGCGCCCACCACCGGGGTCGGAGCAGCGTGGAAGCTGGCTAAAGTCGAGCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB653723             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            GCAGCGTGGAAGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCGGCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACG GCATTTGACCTTCT GTTGCA GGGGA AGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTA CAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAATCACTCTCTGAAAttcatctg]
[-] EMBL CB662934             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCGGCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACG GCATTTGACCTTCT GTTGCA GGGGA AGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTA CAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAATCACTCTCTGAAAAAAAAAg ]
[+] EMBL CB648892             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CAGGATTTGCCTTGAGAGGACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCGAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACG GCATTTGACCTTCT GTTGCA GGGGA AGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTA CAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAATCAC                 ]
[+] EMBL CB648891             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        GATTTGCCTTGCGTGGACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGCGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTGAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCAGAGCTCCCGATAGGGATGGGGCAAGACCATCATTCTTGGCGTCTAAATGCGCGGTGCCCCTTTGTCCATTCCTTCGCTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCGAGCAAGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCCACACG GCATTTGACCTTCT GTTGCA CGGGA AGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGACCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGGAGGTTA CAATACAATTATACAAATAACTGGATTG                                                                                                                    ]
[+] EMBL BM420086             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         gaCGATCCCTTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACG GCATTTGACCTTCT GTTGCA GGGGA AGAGTCTCAGATGCACCCTTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCCATTGAGCCAACCNGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTA CAATACCATTATAC AATAACTGGTTTGACTGCTGCCCCNAGAAGATTTGTGTGTATAATGACTAGTGAA TTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACCAAATCNCTCTCTGAAAAAAAAAA ]
[+] EMBL BI810890             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGGTCCCCTGAAGGACATCAACGCGTGCATTTGACCTTCTGGTTCCAGGGGGAGAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCCATTGAGCCAACCCGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTACCAATACCATTATACCAATAACTGGTTTGACTGCTGCCCCCAGAAGATTTGTGGGTATAATGACTAGTGAATTTTAACCTCGTGTGTCCAATCATGTGCGTTCAGACTTTATTGATATACCAAATCCCTCTCTGAAAAAAAAAA ]




>consensus_13965#0
CGCCGCGCCAACAGAAACCTCTTTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGA
TCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCG
TCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCA
CCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCC
CGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTAGGGGAGCATGTGGAAG
GGTTCGCCGCCGGCGACCCGGTGGTGCCCACGTTCCTGGGCCAGTGCACCGAGTGCGTGG
ACTGCGCCTCGGAGCGGAGCAACGTGTGCTCCACGTACCGGTTCGCGGTGCGCCCCGGGA
TGCCGCGCGACGGCACCGCCCGCTTCCGCGACCGCCACGGCGCCCCGATCCACCACTTCC
TCGGCGTCTCCAGCTTCAGCGAGTACACCGTCGTGGACGCCAACCAGGTCGTCCGCGTCG
ACCCCGCCGTGCCGCCCGCCACGGCCTCCCTCCTCAGCTGCGGCGCCACCACCGGGGTCG
GAGCAGCGTGGAAGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCG
GCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCG
GCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCA
TCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACG
GTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTC
GGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCC
CTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCG
GAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGC
TGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGCATTTG
ACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCT
AAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAG
GTTACAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTA
TAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATA
TACAAAATCACTCTCTGAAAAAAAAAAG

consensusID : consensus_13965#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [GGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGCATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTTCAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATCTTTATGAGTCT]

[-] EMBL CB648893             [GGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGCATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTTCAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATCTTTATGAGTCT]




>consensus_13965#1
GGGGCCAGGATTTGCGGTGCGTCAACGATCATCGGCGTGGATTTGAACCCTGAGAAACAT
GAACTTGGAAAGAAGTTCGGTGTGACGCACTTCATCAATCCACAAGAACTTGGGGACAAA
CCTGTCAGCCAAGCGATCATCGAGATGACTGACGGTGGCGCGGACTACTGCTTCGAGTGC
ATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAG
ACGATCATTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATC
CTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATT
CCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCAC
GAGGTTCCCCTGAAGGACATCAACACGGCATTTGACCTTCTGTTGCAGGGGAAGAGTCTC
AGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCA
GTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTTCAATACAATTATACAAATAACT
GGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGT
GTGTCAAATCATCTTTATGAGTCT

consensusID : consensus_13965#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 654
fasta sequence

                              [TGNACTTGGNAAGAAGTTCGGTGTGACGCACTTCATCATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACNGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGCATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTACAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAAAAAAAAAAAAAA]

[+] EMBL AU055751             [TGNACTTGGNAAGAAGTTCGGTGTGACGCACTTCATCATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGATCATCGAGATGACTGACNGTGGCGCGGACTACTGCTTCGAGTGCATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGCATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTACAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAAAAAAAAAAAAAA]




>consensus_13965#2
TGNACTTGGNAAGAAGTTCGGTGTGACGCACTTCATCATCCACAAGAACTTGGGGACAAA
CCTGTCAGCCAAGCGATCATCGAGATGACTGACNGTGGCGCGGACTACTGCTTCGAGTGC
ATCGGGCTGGCGTCGGTGATGAGCGATGCATTTCGGAGCTCCCGAGAGGGATGGGGCAAG
ACGATCATTTCTTGGCGTCGAAATGCACGGTGCCCCTTTGTCCATTCCTTCGTTGGAGAT
CCTCAACGGCAAATGCGTAATGGGATCACTCTTCGGAGGGGTGAAACCCAAGCAGGACAT
TCCCATCCTGGCCGACAAGTATCTGAACAAGGAGCTGGAGTTGGACAAGTTCATAACTCA
CGAGGTTCCCCTGAAGGACATCAACACGGCATTTGACCTTCTGTTGCAGGGGAAGAGTCT
CAGATGCACCATTTGGATGGACAAGTGATGTGGCTAAGTGAAATTGCAATTGAGCAAACC
AGTTGTCTACTTAAGTTTGCTGCCCACTTCAGTAGGTTACAATACAATTATACAAATAAC
TGGTTTGACTGCTGCCCCAAGAAGATTTGTGTGTATAATGACTAGTGAATTTTAACATCG
TGTGTCAAATCATGTGCGTTCAGACTTTATTGATATACAAAAAAAAAAAAAAAA

consensusID : consensus_13965#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 519
fasta sequence

                              [CAGTAGAGCGCCGCGCCAACAGAAACCTCTTTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGAT--CCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGTCAGTTCATTTCAACTCCTGTTTACTGTTTTTATGTTTTTTTAGATGGCCCACATTGAAAAATCGGCCCAAGCGAGTGGCGTGGAAACAATTGGAATTACACGGCTAGAAAGCTGCTCTGCTGTCCCTATAGGCCGTCGATTTTTAACGAGTCAAACAATACACTAAAGATGGAAACATATGTATGATGTTGAATGTCATGAGCGTATATGGATGCAGTATGTTTGGCTTGTAAAAAAAAAA]

[+] EMBL CF315993             [CAGTAGAGCGCCGCGCCAACAGAAACCTCTTTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGAT  CCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGTCAGTTCATTTCAACTCCTGTTTACTGTTTTTATGTTTTTTTAGATGGCCCACATTGAAAAATCGGCCCAAGCGAGTGGCGTGGAAACAATTGGAATTACACGGCTAGAAAGCTGCTCTGCTGTCCCTATAGGCCGTCGATTTTTAACGAGTCAAACAATACACTAAAGATGGAAACATATGTATGATGTTGAATGTCATGAGCGTATATGGATGCAGTATGTTTGGCTTGTAAAAAAAAA ]
[-] EMBL CF315994             [                                                              GTCAGATCCCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGTCAGTTCATTTCAACTCCTGTTTACTGTTTTTATGTTTTTTTAGATGGCCCACATTGAAAAATCGGCCCAAGCGAGTGGCGTGGAAACAATTGGAATTACACGGCTAGAAAGCTGCTCTGCTGTCCCTATAGGCCGTCGATTTTTAACGAGTCAAACAATACACTAAAGATGGAAACATATGTATGATGTTGAATGTCATGAGCGTATATGGATGCAGTATGTTTGGCTTGTAAAAAAAAAA]




>consensus_13965#3
CAGTAGAGCGCCGCGCCAACAGAAACCTCTTTACTATCTCCTCTCTCTCGCGTCCATGGC
GGGTCAGATCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCC
GCTGGCCGTCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGAT
CGTCTGCACCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGG
CGTTTTCCCGAGGATTTTTGGGCACGAAGCCTTCGGGTCAGTTCATTTCAACTCCTGTTT
ACTGTTTTTATGTTTTTTTAGATGGCCCACATTGAAAAATCGGCCCAAGCGAGTGGCGTG
GAAACAATTGGAATTACACGGCTAGAAAGCTGCTCTGCTGTCCCTATAGGCCGTCGATTT
TTAACGAGTCAAACAATACACTAAAGATGGAAACATATGTATGATGTTGAATGTCATGAG
CGTATATGGATGCAGTATGTTTGGCTTGTAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      CGCCGCGCCAACAGAAACCTCTTTACTATCTCCTCTCTCTCGCGTCCATGGCGGGTCAGA 60
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      TCCCCCAACCCATCCGTTGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCG 120
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      TCGAGGAGATCGTCGTGGACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCA 180
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      CCTCGCTCTGCCACAGCGACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCC 240
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      CGAGGATTTTTGGGCACGAAGCCTTCGGGGTGGTGGAGAGCGTAGGGGAGCATGTGGAAG 300
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      GGTTCGCCGCCGGCGACCCGGTGGTGCCCACGTTCCTGGGCCAGTGCACCGAGTGCGTGG 360
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      ACTGCGCCTCGGAGCGGAGCAACGTGTGCTCCACGTACCGGTTCGCGGTGCGCCCCGGGA 420
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      TGCCGCGCGACGGCACCGCCCGCTTCCGCGACCGCCACGGCGCCCCGATCCACCACTTCC 480
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      TCGGCGTCTCCAGCTTCAGCGAGTACACCGTCGTGGACGCCAACCAGGTCGTCCGCGTCG 540
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      ACCCCGCCGTGCCGCCCGCCACGGCCTCCCTCCTCAGCTGCGGCGCCACCACCGGGGTCG 600
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      ------------------------------------------------------------
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      GAGCAGCGTGGAAGCTGGCTAAAGTCGAGCCGGGGTCTTCGGTTGCTATCTTTGGCCTCG 660
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      --------------------------GGGGCCAGGATTTGCGGTGCGTCAACGATCATCG 34
consensus_13965#2      ------------------------------------------------------------
consensus_13965#0      GCGCCGTAGGATTAGCGGTAGCTGAAGGGGCCAGGATTTGCGGTGCGTCAACGATCATCG 720
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      GCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCA 94
consensus_13965#2      -------------------------TGNACTTGGNAAGAAGTTCGGTGTGACGCACTTCA 35
consensus_13965#0      GCGTGGATTTGAACCCTGAGAAACATGAACTTGGAAAGAAGTTCGGTGTGACGCACTTCA 780
consensus_13965#3      ------------------------------------------------------------
                                                                                   

consensus_13965#1      TCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGAT-CATCGAGATGACTGAC 153
consensus_13965#2      TCA-TCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGAT-CATCGAGATGACTGAC 93
consensus_13965#0      TCAATCCACAAGAACTTGGGGACAAACCTGTCAGCCAAGCGAT-CATCGAGATGACTGAC 839
consensus_13965#3      -------------------------------CAGTAGAGCGCCGCGCCAACAGAAACCTC 29
                                                      ***   ****   *  * * *  *    *

consensus_13965#1      GGTGGCGCGGACTACTGCTTCGAGTGCAT--CGGGCTGGCGTCGGTGATGAGCGATGCAT 211
consensus_13965#2      NGTGGCGCGGACTACTGCTTCGAGTGCAT--CGGGCTGGCGTCGGTGATGAGCGATGCAT 151
consensus_13965#0      GGTGGCGCGGACTACTGCTTCGAGTGCAT--CGGGCTGGCGTCGGTGATGAGCGATGCAT 897
consensus_13965#3      TTTACTATCTCCT-CTCTCTCGCGTCCATGGCGGGTCAGATCCCCCAAC---CCATCCGT 85
                         *        ** **   *** ** ***  ****   *   *    *    * ** * *

consensus_13965#1      TTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATT-CTTGGCGTCGAAATGCACGGT 270
consensus_13965#2      TTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATTTCTTGGCGTCGAAATGCACGGT 211
consensus_13965#0      TTCGGAGCTCCCGAGAGGGATGGGGCAAGACGATCATT-CTTGGCGTCGAAATGCACGGT 956
consensus_13965#3      TGCAAAGCGGCCGTGTGCAGGGCCGCTGGCGAGCCGCTGGCCGTCGAGGAGATCGTCGTG 145
                       * *  ***  *** * *    *  **  *     *  *    * **  ** **   **  

consensus_13965#1      GCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTC 330
consensus_13965#2      GCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTC 271
consensus_13965#0      GCCCCTTTGTCCATTCCTTCGTTGGAGATCCTCAACGGCAAATGCGTAATGGGATCACTC 1016
consensus_13965#3      GACCCGCCCAAGGCGCACGAGGTCCGGATCAAGATCGTCTGCACCTCGCTCTGCCACAGC 205
                       * ***          *    * *   ****   * ** *     *    *  *      *

consensus_13965#1      TTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATC-CTGGCCGACAAGTATCTGAACAA 389
consensus_13965#2      TTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATC-CTGGCCGACAAGTATCTGAACAA 330
consensus_13965#0      TTCGGAGGGGTGAAACCCAAGCAGGACATTCCCATC-CTGGCCGACAAGTATCTGAACAA 1075
consensus_13965#3      GACGTCACGTTCTGGCGTATGCAGGATTTCCCCGGCGTTTTCCCGAGGATTTTTGGGCAC 265
                         **    * *    *  * ******  * ***  *  *  **      * * **  ** 

consensus_13965#1      GGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGC 449
consensus_13965#2      GGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGC 390
consensus_13965#0      GGAGCTGGAGTTGGACAAGTTCATAACTCACGAGGTTCCCCTGAAGGACATCAACACGGC 1135
consensus_13965#3      GAAGCCT---TCGGGTCAGTTCAT--TTCA----ACTCCTGTTTACTGTTTTTATGTTTT 316
                       * ***     * **   *******   ***      ***  *  *     *  *      

consensus_13965#1      ATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATG 509
consensus_13965#2      ATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATG 450
consensus_13965#0      ATTTGACCTTCTGTTGCAGGGGAAGAGTCTCAGATGCACCATTTGGATGGACAAGTGATG 1195
consensus_13965#3      TTTAGATGGCCCAC-ATTGAAAAATCGGCCCAAGCGAGTGGCGTGGA--AACAATTGGAA 373
                        ** **    *       *   **  * * **   *       ****   **** **   

consensus_13965#1      TGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTC 569
consensus_13965#2      TGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTC 510
consensus_13965#0      TGGCTAAGTGAAATTGCAATTGAGCAAACCAGTTGTCTACTTAAGTTTGCTGCCCACTTC 1255
consensus_13965#3      TTACACGGCTAGAAAGCTGCTCTGCTGTCC--CTATAGGCCGTCGATTTTTAACGAGTCA 431
                       *  *   *  * *  **   *  **   **   * *   *    * **  *  * * *  

consensus_13965#1      AGTAGGTTTCAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGT 629
consensus_13965#2      AGTAGGTTACAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGT 570
consensus_13965#0      AGTAGGTTACAATACAATTATACAAATAACTGGTTTGACTGCTGCCCCAAGAAGATTTGT 1315
consensus_13965#3      AACAA--TACACTAAAGATGGAAACATATGTATGATGTTGAATGTCATGAGCGTATATGG 489
                       *  *   * ** ** *  *  * * ***  *    **     ** *   **   ** ** 

consensus_13965#1      GTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATCTTTATG-AGTCT---- 684
consensus_13965#2      GTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTAT 630
consensus_13965#0      GTGTATAATGACTAGTGAATTTTAACATCGTGTGTCAAATCATGTGCGTTCAGACTTTAT 1375
consensus_13965#3      ATGCAGTATGTTTGGCTTGTAAAAAAAAAA------------------------------ 519
                        ** *  ***  * *    *   ** *                                 

consensus_13965#1      ---------------------------------
consensus_13965#2      TGATATACAAAAAAAAAAAAAAAA--------- 654
consensus_13965#0      TGATATACAAAATCACTCTCTGAAAAAAAAAAG 1408
consensus_13965#3      ---------------------------------