Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 13966 cluster # 13966       Sequences # 14       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_13966#0 length = 1338 sequences # 13  
consensus_13966#1 length = 361 sequences # 1  

consensusID : consensus_13966#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 1338
fasta sequence
                              [TTTTTCCTTCGCCTGAACTGAGTTTTGCATCGTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA-GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC-TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC-ACCTTAGTAAAGGCTATAGCTGGT-GTTTCT-GTGACCAGCAACGCGGATTCCGCGAAGCCTAGCAAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG-AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTACCGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAGGAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTTTTCCTATCAGAGGGCAAGGTCGAGTCTGGACCAGATCCCTTGGAGAGCTTCAAGAGGTACTGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACCCACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATACAAATTGGATTCAGGTG-GTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGA-GCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGG-CTGTTTTACCAC-CTACTAATTTCATCGAGCTATAATTTGTTACTGCTATTCTCTGCAAAAAAAAAAAAAAAAAAA]

[+] EMBL CF321764             [TTTTTCCTTCGCCTGAACTGAGTTTTGCATCGTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCGCGAAGCCTAGCAAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL CB657467             [                     GTTTTGCATCGTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCGCGAAGCCTAGCAAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTACCGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAGGAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTTTTCCTATCAGAGGGCAAGGTCGAGTCTGGACCANATC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL AK066247             [                       TTTGCATCGTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCGCGAAGCCTAGCAAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTACCGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAGGAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTTTTCCTATCAGAGGGCAAGGTCGAGTCTGGACCAGATCCCTTGGAGAGCTTCAAGAGGTACTGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACCCACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATACAAATTGGATTCAGGTG GTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGA GCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGG CTGTTTTACCAC CTACTAATTTCATCGAGCTATAATTTGTTACTGC                             ]
[+] EMBL C91820               [                        TTGCATCGTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGNCGNCG  GGCGGATGNGCAGCCGCGGCGGAG CAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGNAGCAAAGCTGANGCAGAAGNCCAAGAAGAAGCAGGTAGAGGNGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATNCCGCAGAGCTCGCTACTTTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGNACAACTTTAGTAAAGGCTATAGCTGGTGGTTTCTNGTGACCAGCAACGCGTATT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[+] EMBL CA997971             [                               GTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCCAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCGCGAAGCCTAGCAAGGGTGCACGGCGTCGAGAGAAGAAGGGCAAGGAAGAGGCCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAGAAAGC TGAGCCCATGGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL CF332189             [                      gagtagaaaGTTTGCCAATGGACGAAACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCGCGAAGCCTAGCAAGGGTGCACGGCGTCGAGAG AGAAGGCAAAGGAAGAGGCCGCTAGAGAGCGGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTACCGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAGGAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ]
[-] EMBL AU174924             [                                               AACCCTAGCCGACGAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAAGAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGA GCAGAAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCAGAGCTCGCTAC TTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCGCGAAGCCTAACAAGGGTGCACGGCGTCGAGAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL AU030331             [                                                                                                                                                                                                                                                                                                                                                    AGAAAAGGGGAACATGGAC ACCTTAGTAAAGGCTATAGCTGGT GTTTCT GTGACCAGCAACGCGGATTCCG GAA CCTAGCAAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTACCGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAGGAGCTGCGGCAAtg                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[-] EMBL CB657468             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 CCGCTAGAGAGCAGCGGATTCAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTACCGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAGGAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTTTTCCTATCAGAGGGCAAGGTCGAGTCTGGACCAGATCCCTTGGAGAGCTTCAAGAGGTACTGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACCCACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATACAAATTGGATTCAGGTG GTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGA GCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTGCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGG CTGTTTTACCACGGTACTAATTTCATCGAGCTATAATTTGTTACTG                              ]
[+] EMBL AU030332             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTTTTCCTATCAGAGGGCAAGGTCGAGTCTGGACCAGATCCCTTGGAGAGCTTCAAGAGGTACTGTGAGGNGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACCCACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATACAAATTGGATTCAGGTG GTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGA GCACTACAACTCGGT  TTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGG CTGTTTTACCAC CTACTAATTTCATCGAGCTATAATTTGTTNCTGCTATTCTCTGCAAAAAAAAAAAAAAAAAAA]
[+] EMBL BM038932             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 aGGCAA GTCGAGTCTGGACCAGATCC  TGGAGA CTTCAAGAGTTACTGTGAAGAGTTTGATTCAACTGCTGCTTGGGGT GGCAACTTGAGCTTGGTGCTCTAACCCACTGCCTGAAGAAGCACATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGCCAAAGAATACAAATTGGATTCAGGTGTGTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGACGCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGG CTGTTTTACCAC CTACTAAaaaaaaa                                                 ]
[-] EMBL CF277435             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              GTACTGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACCCACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATACAAATTGGATTCAGGTG GTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGA GCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGGAATGTTTTACCAC CTACTAAaaa                                                     ]
[-] EMBL AU174923             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TGCCTGAAGAAGCACATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATACAAATTGGATTCAGGTG GTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGA GCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTGAGG CTGTTTTACCAC CAACTAATTTCATCGAGC                                             ]


>consensus_13966#0 TTTTTCCTTCGCCTGAACTGAGTTTTGCATCGTTTGCCAATGGACGAAACCCTAGCCGAC GAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAA GAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAG GAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGAGCAGAAGGCCAAGAAG AAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCA GAGCTCGCTACTTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGACACC TTAGTAAAGGCTATAGCTGGTGTTTCTGTGACCAGCAACGCGGATTCCGCGAAGCCTAGC AAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATT CAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTAC CGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAG GAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTT TTCCTATCAGAGGGCAAGGTCGAGTCTGGACCAGATCCCTTGGAGAGCTTCAAGAGGTAC TGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACC CACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGC AAAGAATACAAATTGGATTCAGGTGGTAAAGATGGCCCTAGCATTAGGTTGTCCTATCAC AGACATGCCTATGGTCTTGGTGAGCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAA AGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCA GTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATC TTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTA CTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTG AGGCTGTTTTACCACCTACTAATTTCATCGAGCTATAATTTGTTACTGCTATTCTCTGCA AAAAAAAAAAAAAAAAAA



consensusID : consensus_13966#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 361
fasta sequence
                              [ATCGTTNGCCAATGGACGAAACCCTAGCCGACGAATCCGACGCCGNGNGGATGNGNCAGCCGCGGCGNAGCANCGCAGGAATCNCAGCAAGAGACGCTCGAGGAGGTNCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAANAAGCAGCNGCTAAAGGCAGCAAAGCTGAGCANNAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCACAGAGCTCGCTACTNTTGGGTACAAATCCTCAGGCAGCTCAGATAAGAGGACATGGCCAACTTAGTAAAGGCTATAGATGGTGTTTCTATGNC]

[+] EMBL OSS4187A             [ATCGTTNGCCAATGGACGAAACCCTAGCCGACGAATCCGACGCCGNGNGGATGNGNCAGCCGCGGCGNAGCANCGCAGGAATCNCAGCAAGAGACGCTCGAGGAGGTNCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAANAAGCAGCNGCTAAAGGCAGCAAAGCTGAGCANNAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCACAGAGCTCGCTACTNTTGGGTACAAATCCTCAGGCAGCTCAGATAAGAGGACATGGCCAACTTAGTAAAGGCTATAGATGGTGTTTCTATGNC]


>consensus_13966#1 ATCGTTNGCCAATGGACGAAACCCTAGCCGACGAATCCGACGCCGNGNGGATGNGNCAGC CGCGGCGNAGCANCGCAGGAATCNCAGCAAGAGACGCTCGAGGAGGTNCTCTCGAGGCAT AGGAAAGAGAAATCCAAACTCCAGGATAAGGAAACAAGCCTCAAANAAGCAGCNGCTAAA GGCAGCAAAGCTGAGCANNAGGCCAAGAAGAAGCAGGTAGAGGAGGAGATTTCACGCCTC TCAGCTGAGTTAGAGGCGAAACATGCCACAGAGCTCGCTACTNTTGGGTACAAATCCTCA GGCAGCTCAGATAAGAGGACATGGCCAACTTAGTAAAGGCTATAGATGGTGTTTCTATGN C



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_13966#0      TTTTTCCTTCGCCTGAACTGAGTTTTGCATCGTTTGCCAATGGACGAAACCCTAGCCGAC 60
consensus_13966#1      ----------------------------ATCGTTNGCCAATGGACGAAACCCTAGCCGAC 32
                                                   ****** *************************

consensus_13966#0      GAATCCGCCGCCGGCGGCGGCGAGGCAGCCGCGGCGGAGCCAGCGCAGGAATCGCAGCAA 120
consensus_13966#1      GAATCCGACGCCGNGNG-GATGNGNCAGCCGCGGCGNAGC-ANCGCAGGAATCNCAGCAA 90
                       ******* *****   * *  * * *********** *** * ********** ******

consensus_13966#0      GAGACGCTCGAGGAGGTGCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAG 180
consensus_13966#1      GAGACGCTCGAGGAGGTNCTCTCGAGGCATAGGAAAGAGAAATCCAAACTCCAGGATAAG 150
                       ***************** ******************************************

consensus_13966#0      GAAACAAGCCTCAAGAAAGCAGCCGCTAAAGGCAGCAAAGCTGAGCAGAAGGCCAAGAAG 240
consensus_13966#1      GAAACAAGCCTCAAANAAGCAGCNGCTAAAGGCAGCAAAGCTGAGCANNAGGCCAAGAAG 210
                       **************  ******* ***********************  ***********

consensus_13966#0      AAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCGCA 300
consensus_13966#1      AAGCAGGTAGAGGAGGAGATTTCACGCCTCTCAGCTGAGTTAGAGGCGAAACATGCCACA 270
                       ********************************************************* **

consensus_13966#0      GAGCTCGCTACTTTTGGGTACAAATCCTCAGGCAGCTCAGAAAAGGGGAACATGGACACC 360
consensus_13966#1      GAGCTCGCTACTNTTGGGTACAAATCCTCAGGCAGCTCAGATAAGAGGA-CATGGCCAAC 329
                       ************ **************************** *** *** ***** ** *

consensus_13966#0      TTAGTAAAGGCTATAGCTGGTGTTTCTGTGACCAGCAACGCGGATTCCGCGAAGCCTAGC 420
consensus_13966#1      TTAGTAAAGGCTATAGATGGTGTTTCTATGNC---------------------------- 361
                       **************** ********** ** *                            

consensus_13966#0      AAGGGTGCACGGCGTCGAGAGAAGAAGGCAAAGGAAGAGGCCGCTAGAGAGCAGCGGATT 480
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      CAAGAAGAGCAAAACAATCTTGTCAGTGACCGCATGATAGAAAATGAAAAGCTTGAGAAG 540
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      AAGCTTGAGCCCATGGGACTGACCATTCAGGAGATAAAGCCAGATGGCCACTGCCTGTAC 600
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      CGTGCTGTTGAGAACCAGCTGTCACTCTATTCCAGAGAAACCACACAATACAATTACCAG 660
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      GAGCTGCGGCAAATGACTGCCAATTATATGAAAGAGCATGCGGCAGATTTTCTCCCATTT 720
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      TTCCTATCAGAGGGCAAGGTCGAGTCTGGACCAGATCCCTTGGAGAGCTTCAAGAGGTAC 780
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      TGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTTGGTGCTCTAACC 840
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      CACTGCCTGAAGAAGCGCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGC 900
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      AAAGAATACAAATTGGATTCAGGTGGTAAAGATGGCCCTAGCATTAGGTTGTCCTATCAC 960
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      AGACATGCCTATGGTCTTGGTGAGCACTACAACTCGGTGGTTCCTGCTTAGTTATCTAAA 1020
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      AGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTTTCCAGTCATCCA 1080
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      GTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATC 1140
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      TTCTCGTCAATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTA 1200
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      CTTCCCAAACAGTTTTGCTTGTAAAACTGAAGTATGTCTCATTATCTTAGTTTCCTGTTG 1260
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      AGGCTGTTTTACCACCTACTAATTTCATCGAGCTATAATTTGTTACTGCTATTCTCTGCA 1320
consensus_13966#1      ------------------------------------------------------------
                                                                                   

consensus_13966#0      AAAAAAAAAAAAAAAAAA 1338
consensus_13966#1      ------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)