Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 1397 cluster # 1397       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1397#0 length = 2360 sequences # 2  

consensusID : consensus_1397#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 2360
fasta sequence
                              [TGGCTTACACTGATCGATGCTGTTCTCAGTTCTCACCACCATTTTTACCTCGAAGATTTCTAGATTCGATCAGCAAACCAATTGGAAGCACAATGCAGTTCAGGCTGGTGATCTTGGTTCTGCTCCTCTCCTGCTCGCTTCAGCTGCTTCGCGCGTTTCCATTCCCCATCCCGTTCTTTGGCCCCTTCACGAGCCCACAAGACGTTGATGCGATAAACGAGCTGTACGCGTCGCTGGGCTCGCCTGACCTCCATGGCTGGGCTTCTTCAGGAGGAGACCCCTGCATGGAAGCATGGCAGGGGGTGCAATGCCTTGGACCCAACATCACTGCAATAGAGCTCAGAGGTGCAGGCCTGGGAGGAAAGCTGAGTGAGACGCTGGGGAAGTTCACTGCCATGACAGCATTGGATCTGAGCAGCAACCGCATTGGGGGAGTGATTCCTGAGAGCTTACCACCTGCAGTAAAACAACTGAATTTATCTTCGAATAGTCTCAGTGGCAAACTCCCAGATTCGATGGCGAAGCTG-AACTCGCTTTCGACACTGCATGTTCAGAACAATCAGCTCACTGGCACACTTGATGTTCTA-GGAGATCTTCCCCTGAAAGACTTGGATATAGAGAACAATCTTTTCTCAGGACCAATCCCAGAGAAACTGATCAACATCCCAAAATTTCTGAGAAACGGCAACCATCTTACCATCCCCACGATGCCCGGCTCTTCTCCAACTCCGGATACCATCCCCGGCTCTCCTCCGACTCCGGCGGCAGCGGTGGCGGCGCCTCGATCAGGTGCTTCACACCCTCCTATATATGTAATTCCGGCCACTCCACATGGCGCTGCACAGGGTGACCCTCCGAGACACGGCAAGAAGGTCTCGCCGGCGAAAGCCGCCGGATTCAGCATCCTCGCCGCCGGCTCACTGACCATTGCCGTGGTCCTGATCGTCTTCGCCGTGTCGAAACGGCGGCGGGAGACGTCTCTTCATGGAGGATTTCTGAGAGGAGTTGAGATGAGCACTCCGGATTGGAGTGGGAAGCCTTCAGGACAAAGTGCAGTTGTCAAGGTAGACAAAGAACAAAGCACAGTTGCTGAAGAGAAGGATACCAAGGGTAGCATTTCTTCATATCAGAAGAATGTTCAGGAGAGTTTACAAAACCATCCTTTGCAATTCAAGTTCACAATCTTCACAGTTGCATCCTTGCAACAGTATACCAACAGTTTCAGTGAGCAGAATCTGATGAGGCAAACCCTGTTCGGAAAAATCTACCTAGCAGAGCAGCAAGACATCAAGTTTGCAGTACTGAAGCTTGACGAAGCGATGGCGAGAATGCCGGTGGACGAGTTCTTGAGGATGGTTCAGAGAATCTCTGAACTCCAGCATCCCAACATCGAGGAGCTTGCAGGATGCTGCGTCGAGCACGGACAGAGGCTGCTCGTCTACAAGCATTTCAGCGATGAAACTCTCGACGACATGATCCATCTGAAGAAACTGGCATCATCAGACGATCCTGCTGCCAAGATCACTCTTCCATGGGATGCCCGGGTAGCTGTCGCACTCGAAGCTGCGAAAGCTCTAGAGTACCTCCACGAAGGTGGTCAGAGACAGGTTGTGCACCAGCATTTCAGGCCTGAACATGTGCTCGTCGACGGCGAGATGCGTGTGCGCGTGTCCGGCTGCGGCCTTGCTGCGGCTGTGAAATCCGGCTTGGATCTTCAGTCGGAATGCTGGCTCGACGCGCTGAGCTACGAGCCACCGGAGGCGGCGGCGGCGCCATGGACGGACAAGGGCGACGTGTACAGCTTCGGGGTGGTGATGCTGCAGCTTCTGACGGGGCGGAGGCCTTACGACGGCGCGCGGCCGCGGGGCGAGAGGCGGCTGGTGGCGTGGGCGAGCTCGCGGCTGCACGACCTGACGGCGCTGGAGAAGATGGCCGACCCGCGCCTCGGGACGCCGGCGACGGTCAGGTCCATGTCGCGGTTCGCCGACGTCATCAGCCGGTGCACGCAGCAGGAAGCGGAGTTCCGGCCGGCCATGTCGCAGGTGGTGCAGGATCTGCGGCGCGCGCTGCAGCCTGCACGCGATGCTTGCGGACAGCAGAGCTGCAGCAACTGATTAGTGACGAAAATTTACTAATCCCGCAGTTCCGAAAAAATATATATAACACCATATAAGACATACTCTAATGCCCTATATTTATGCCACTATCTTGTGTTAAATCTATTATATTTTGGAACGAAGGTTGTAGTAATATTTGTCATCCTCCTGATTTGCGTGGGTTCGATTTAAAGTTTTAGACAGCGAAATACCATCAGAAAATAGATGGAAAAGTGGAATACCAACGGAATACAAAGGGAGGAA]

[+] EMBL AK111638             [TGGCTTACACTGATCGATGCTGTTCTCAGTTCTCACCACCATTTTTACCTCGAAGATTTCTAGATTCGATCAGCAAACCAATTGGAAGCACAATGCAGTTCAGGCTGGTGATCTTGGTTCTGCTCCTCTCCTGCTCGCTTCAGCTGCTTCGCGCGTTTCCATTCCCCATCCCGTTCTTTGGCCCCTTCACGAGCCCACAAGACGTTGATGCGATAAACGAGCTGTACGCGTCGCTGGGCTCGCCTGACCTCCATGGCTGGGCTTCTTCAGGAGGAGACCCCTGCATGGAAGCATGGCAGGGGGTGCAATGCCTTGGACCCAACATCACTGCAATAGAGCTCAGAGGTGCAGGCCTGGGAGGAAAGCTGAGTGAGACGCTGGGGAAGTTCACTGCCATGACAGCATTGGATCTGAGCAGCAACCGCATTGGGGGAGTGATTCCTGAGAGCTTACCACCTGCAGTAAAACAACTGAATTTATCTTCGAATAGTCTCAGTGGCAAACTCCCAGATTCGATGGCGAAGCTG AACTCGCTTTCGACACTGCATGTTCAGAACAATCAGCTCACTGGCACACTTGATGTTCTA GGAGATCTTCCCCTGAAAGACTTGGATATAGAGAACAATCTTTTCTCAGGACCAATCCCAGAGAAACTGATCAACATCCCAAAATTTCTGAGAAACGGCAACCATCTTACCATCCCCACGATGCCCGGCTCTTCTCCAACTCCGGATACCATCCCCGGCTCTCCTCCGACTCCGGCGGCAGCGGTGGCGGCGCCTCGATCAGGTGCTTCACACCCTCCTATATATGTAATTCCGGCCACTCCACATGGCGCTGCACAGGGTGACCCTCCGAGACACGGCAAGAAGGTCTCGCCGGCGAAAGCCGCCGGATTCAGCATCCTCGCCGCCGGCTCACTGACCATTGCCGTGGTCCTGATCGTCTTCGCCGTGTCGAAACGGCGGCGGGAGACGTCTCTTCATGGAGGATTTCTGAGAGGAGTTGAGATGAGCACTCCGGATTGGAGTGGGAAGCCTTCAGGACAAAGTGCAGTTGTCAAGGTAGACAAAGAACAAAGCACAGTTGCTGAAGAGAAGGATACCAAGGGTAGCATTTCTTCATATCAGAAGAATGTTCAGGAGAGTTTACAAAACCATCCTTTGCAATTCAAGTTCACAATCTTCACAGTTGCATCCTTGCAACAGTATACCAACAGTTTCAGTGAGCAGAATCTGATGAGGCAAACCCTGTTCGGAAAAATCTACCTAGCAGAGCAGCAAGACATCAAGTTTGCAGTACTGAAGCTTGACGAAGCGATGGCGAGAATGCCGGTGGACGAGTTCTTGAGGATGGTTCAGAGAATCTCTGAACTCCAGCATCCCAACATCGAGGAGCTTGCAGGATGCTGCGTCGAGCACGGACAGAGGCTGCTCGTCTACAAGCATTTCAGCGATGAAACTCTCGACGACATGATCCATCTGAAGAAACTGGCATCATCAGACGATCCTGCTGCCAAGATCACTCTTCCATGGGATGCCCGGGTAGCTGTCGCACTCGAAGCTGCGAAAGCTCTAGAGTACCTCCACGAAGGTGGTCAGAGACAGGTTGTGCACCAGCATTTCAGGCCTGAACATGTGCTCGTCGACGGCGAGATGCGTGTGCGCGTGTCCGGCTGCGGCCTTGCTGCGGCTGTGAAATCCGGCTTGGATCTTCAGTCGGAATGCTGGCTCGACGCGCTGAGCTACGAGCCACCGGAGGCGGCGGCGGCGCCATGGACGGACAAGGGCGACGTGTACAGCTTCGGGGTGGTGATGCTGCAGCTTCTGACGGGGCGGAGGCCTTACGACGGCGCGCGGCCGCGGGGCGAGAGGCGGCTGGTGGCGTGGGCGAGCTCGCGGCTGCACGACCTGACGGCGCTGGAGAAGATGGCCGACCCGCGCCTCGGGACGCCGGCGACGGTCAGGTCCATGTCGCGGTTCGCCGACGTCATCAGCCGGTGCACGCAGCAGGAAGCGGAGTTCCGGCCGGCCATGTCGCAGGTGGTGCAGGATCTGCGGCGCGCGCTGCAGCCTGCACGCGATGCTTGCGGACAGCAGAGCTGCAGCAACTGATTAGTGACGAAAATTTACTAATCCCGCAGTTCCGAAAAAATATATATAACACCATATAAGACATACTCTAATGCCCTATATTTATGCCACTATCTTGTGTTAAATCTATTATATTTTGGAACGAAGGTTGTAGTAATATTTGTCATCCTCCTGATTTGCGTGGGTTCGATTTAAAGTTTTAGACAGCGAAATACCATCAGAAAATAGATGGAAAAGTGGAATACCAACGGAATACAAAGGGAGGAA]
[+] EMBL OSC795               [                                                                                                                                                                                                                                                            ATGGCTGGGCTTCTTCAGGAGGAGACCCCTGCATGGAAGCATGGCAGGGGGTGCAATGCCTTGGACCCAACATCACTGCAATAGAGCTCAGAGGTGCAGGCCTGGGAGGAAAGCTGAGTGAGACGCTGGGGAAGTTCACTGCCATGACAGCATTGGATCTGAGCAGCAACCGCATTGGGGGAGTGATTCCTGAGAGCTTACCACCTGCAGTAAAACAACTGAATTTATCTTCGAATAGTCTCAGTGGCAAACTCCCAGATTCGATGGCGA  NTGAAACTCGCTTTCGACACTGCATGTTCAGAACAATCAGCTCACTGGCACACTTGATGTTCTAGGGAGATCTTCCCCTGAAAGACTTNGATATAGAGAACAATCTTTTCTCAGGACCAAT CCAGAGAAACTGATCAACAT CCAAAATTTCTGAGAAACGGCAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]


>consensus_1397#0 TGGCTTACACTGATCGATGCTGTTCTCAGTTCTCACCACCATTTTTACCTCGAAGATTTC TAGATTCGATCAGCAAACCAATTGGAAGCACAATGCAGTTCAGGCTGGTGATCTTGGTTC TGCTCCTCTCCTGCTCGCTTCAGCTGCTTCGCGCGTTTCCATTCCCCATCCCGTTCTTTG GCCCCTTCACGAGCCCACAAGACGTTGATGCGATAAACGAGCTGTACGCGTCGCTGGGCT CGCCTGACCTCCATGGCTGGGCTTCTTCAGGAGGAGACCCCTGCATGGAAGCATGGCAGG GGGTGCAATGCCTTGGACCCAACATCACTGCAATAGAGCTCAGAGGTGCAGGCCTGGGAG GAAAGCTGAGTGAGACGCTGGGGAAGTTCACTGCCATGACAGCATTGGATCTGAGCAGCA ACCGCATTGGGGGAGTGATTCCTGAGAGCTTACCACCTGCAGTAAAACAACTGAATTTAT CTTCGAATAGTCTCAGTGGCAAACTCCCAGATTCGATGGCGAAGCTGAACTCGCTTTCGA CACTGCATGTTCAGAACAATCAGCTCACTGGCACACTTGATGTTCTAGGAGATCTTCCCC TGAAAGACTTGGATATAGAGAACAATCTTTTCTCAGGACCAATCCCAGAGAAACTGATCA ACATCCCAAAATTTCTGAGAAACGGCAACCATCTTACCATCCCCACGATGCCCGGCTCTT CTCCAACTCCGGATACCATCCCCGGCTCTCCTCCGACTCCGGCGGCAGCGGTGGCGGCGC CTCGATCAGGTGCTTCACACCCTCCTATATATGTAATTCCGGCCACTCCACATGGCGCTG CACAGGGTGACCCTCCGAGACACGGCAAGAAGGTCTCGCCGGCGAAAGCCGCCGGATTCA GCATCCTCGCCGCCGGCTCACTGACCATTGCCGTGGTCCTGATCGTCTTCGCCGTGTCGA AACGGCGGCGGGAGACGTCTCTTCATGGAGGATTTCTGAGAGGAGTTGAGATGAGCACTC CGGATTGGAGTGGGAAGCCTTCAGGACAAAGTGCAGTTGTCAAGGTAGACAAAGAACAAA GCACAGTTGCTGAAGAGAAGGATACCAAGGGTAGCATTTCTTCATATCAGAAGAATGTTC AGGAGAGTTTACAAAACCATCCTTTGCAATTCAAGTTCACAATCTTCACAGTTGCATCCT TGCAACAGTATACCAACAGTTTCAGTGAGCAGAATCTGATGAGGCAAACCCTGTTCGGAA AAATCTACCTAGCAGAGCAGCAAGACATCAAGTTTGCAGTACTGAAGCTTGACGAAGCGA TGGCGAGAATGCCGGTGGACGAGTTCTTGAGGATGGTTCAGAGAATCTCTGAACTCCAGC ATCCCAACATCGAGGAGCTTGCAGGATGCTGCGTCGAGCACGGACAGAGGCTGCTCGTCT ACAAGCATTTCAGCGATGAAACTCTCGACGACATGATCCATCTGAAGAAACTGGCATCAT CAGACGATCCTGCTGCCAAGATCACTCTTCCATGGGATGCCCGGGTAGCTGTCGCACTCG AAGCTGCGAAAGCTCTAGAGTACCTCCACGAAGGTGGTCAGAGACAGGTTGTGCACCAGC ATTTCAGGCCTGAACATGTGCTCGTCGACGGCGAGATGCGTGTGCGCGTGTCCGGCTGCG GCCTTGCTGCGGCTGTGAAATCCGGCTTGGATCTTCAGTCGGAATGCTGGCTCGACGCGC TGAGCTACGAGCCACCGGAGGCGGCGGCGGCGCCATGGACGGACAAGGGCGACGTGTACA GCTTCGGGGTGGTGATGCTGCAGCTTCTGACGGGGCGGAGGCCTTACGACGGCGCGCGGC CGCGGGGCGAGAGGCGGCTGGTGGCGTGGGCGAGCTCGCGGCTGCACGACCTGACGGCGC TGGAGAAGATGGCCGACCCGCGCCTCGGGACGCCGGCGACGGTCAGGTCCATGTCGCGGT TCGCCGACGTCATCAGCCGGTGCACGCAGCAGGAAGCGGAGTTCCGGCCGGCCATGTCGC AGGTGGTGCAGGATCTGCGGCGCGCGCTGCAGCCTGCACGCGATGCTTGCGGACAGCAGA GCTGCAGCAACTGATTAGTGACGAAAATTTACTAATCCCGCAGTTCCGAAAAAATATATA TAACACCATATAAGACATACTCTAATGCCCTATATTTATGCCACTATCTTGTGTTAAATC TATTATATTTTGGAACGAAGGTTGTAGTAATATTTGTCATCCTCCTGATTTGCGTGGGTT CGATTTAAAGTTTTAGACAGCGAAATACCATCAGAAAATAGATGGAAAAGTGGAATACCA ACGGAATACAAAGGGAGGAA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)