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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13983#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 960 fasta sequence
[TTCCACGGGTGGAGAGGCAGCCAAGG-ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG--TCCAGGGCAATGGGGG-CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC-GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTAGCCCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTCAATAACCTTCGACTAGTGATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTTCCCGGTTTCATTGTGATGGTTCCTAATATGATTCGAGAATTTCAATTTGATATTTGTTTTAAACCATCCGGGAAACTTGTTTATACATGATACTGGTAGAATTCTACTAAAAAAAAAAAA]
[+] EMBL AK059422 [TTCCACGGGTGGAGAGGCAGCCAAGG ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCT ]
[+] EMBL BE229454 [ CGAGTGGAGAGGCAGCCAAGG ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCG CGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGACGGCGAAG AGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGTTGGAGTTGGTGCGGCTGGCTCCTMACCCAAAGTACAGGSGGCGGGGGSMCATC ARNAGAAGTAC ]
[+] EMBL AU222644 [ AGAGGCAGCCAAGGTATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTG ]
[+] EMBL AF095707 [ GAGGCAGCCAAGG ATACGATAGCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTAGCCCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTCAATAACCTTCGACTAGTGATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTTCCCGGTTTCATTGTGATGGTTCCTAATATGATTCGAGAATTTCAATTTGATATTTGTTTTAAACCATCCGGGAAACTTGTTTATACATGATACTGGTAGAATTCTACTAAAAAAAAAAAA]
[+] EMBL AK099298 [ GCAAGGAAGAGAGAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTG ]
[+] EMBL OSS16471A [ GAGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAG AGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGNTCCCGCCCCATCTNCAAGACCAAGNACTTCTTCGCCG ]
[+] EMBL OSS13817A [ AGCGTTGAAGATGCTGCTGACCACCCCGTTCGTGTCGTCCCCTGTNAGGG TCCAGGGCAATGGGGG CAGCGGNGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAG AGCTGACGGGGC GTNTGGTGACGACGAAGGCGGACAANACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCNTCGAGCTCCGCNGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTTCCCCCGNGCGACAACCGCng ]
[+] EMBL OSS15386A [ TGAAGATGCTGCTGACCACCCCGTTCGTNTCGTCCCCTGTNAGGG TCCAGGGCAATGGGGG CAGCGGCGCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAG AGCTGACGGGGC GTNTGGTNACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCNGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCTCATCAAGAAGAAGTACCANGCGCACGACCCGNACAACCANTTCAAGGTCGGCGACGTCNTCG ]
[-] EMBL CB966539 [ ACCCCGTTCGTGTCGTCCCCTGTGAGGG TCCAGGCCAATGGGGC CAGCGGCGCCTCGCCGTGGCCGGGCCCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACGGGGC GTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCC TAATCGT AATTC TAA GTAATAATCTGTGCTGTACTATGTACTC TTGA TTTTA TTGCTCTGG TTTCGA ]
[+] EMBL BM037941 [ gtgGAGGGGTTCCAGGGGCATGGGGGTCAGCGGCGCCTC CCGT GGCGGGCGC GCGACGGC CTGAGGATCCAGGCGGCGAAGCAGCTGTCGGGGCTGTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCTCCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTC CCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGC ATGCTATGTTCCCTTTTCAaaaaaa ]
[-] EMBL CB966417 [ CCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGCCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCC ]
[-] EMBL CB967257 [ CCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCGGACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAGACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGCCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTC ]
[+] EMBL AU031227 [ GCGACACCCGCCGCAAGTCCCAGCTCCTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCNGGNCCAGCCACCCACGCCTCCTCCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTANTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCNGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATNNTNNTNGNGTAAAAaaaaa ]
consensusID : consensus_13983#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence
[GGNANAGNNNGNGGNCGAAGGGGNAAGAGGGGNNGGGGAGANGAAGAAGGGGGAGGAGAGAGGGGGGNANGAGGAGGGAGGNAGAAAAGANGNAAGGGGGGNNNNAGAANNANGNGAGGGGGGGNGNNNNANNNAGGAGANAANNNNAGAGAGGGGGAGAGGTAANAGAGACNANCGGAAGNNGNGAAANGGGCNAANGGGAGNAGGAGGGGGANGGNNNGAGGGNAGAGNANATCCCCCCCNGGGGGNCGCCGCAAGTCCCAGCTCCTCCCGCNTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCNTCCTCCTTCCTCCNGTTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGNGTAATTCTGTTATCCTAGC]
[-] EMBL BE229155 [GGNANAGNNNGNGGNCGAAGGGGNAAGAGGGGNNGGGGAGANGAAGAAGGGGGAGGAGAGAGGGGGGNANGAGGAGGGAGGNAGAAAAGANGNAAGGGGGGNNNNAGAANNANGNGAGGGGGGGNGNNNNANNNAGGAGANAANNNNAGAGAGGGGGAGAGGTAANAGAGACNANCGGAAGNNGNGAAANGGGCNAANGGGAGNAGGAGGGGGANGGNNNGAGGGNAGAGNANATCCCCCCCNGGGGGNCGCCGCAAGTCCCAGCTCCTCCCGCNTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCNTCCTCCTTCCTCCNGTTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATCTGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCAGCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAACCATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGNGTAATTCTGTTATCCTAGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13983#0 TTCCACGGGTGGAGAGGCAGCCAAGGATACGATAGCAAGGAAGAGAGAGCGTTGAAGATG 60
consensus_13983#1 ------------------------------------------------------------
consensus_13983#0 CTGCTGACCACCCCGTTCGTGTCGTCCCCTGTGAGGGTCCAGGGCAATGGGGGCAGCGGC 120
consensus_13983#1 ------------------------------------------------------------
consensus_13983#0 GCCTCGCCGTGGGCGGGCGCGGCGACGGCGCTGAGGATCCAGGCGGCGAAGCAGCTGACG 180
consensus_13983#1 ---------------GGNANAGNNNGNGGNCGAAGGG----GNAAGAGGGGNNGGGGAGA 41
** * * * *** * * * * * **
consensus_13983#0 GGGCGTGTGGTGACGACGAAGGCGGACAAGACGGTGGGGGTGGAGGTGGTGCGGCTGGCT 240
consensus_13983#1 NGAAGAAGGGGGAGGAGAGAGGGGGGNANGAGGAGGGAGGNAGAAAAGANGNAAGGGGGG 101
* * ** ** ** *** ** * ** * ** ** ** * * **
consensus_13983#0 CCTCACCCAAAGTACAAGCGGCGGGAGCGCATCAAGAAGAAGTACCAGGCGCACGACCCG 300
consensus_13983#1 NNNNA---GAANNANGNGAGG-GGGGGNGNNNNANNNAGGAG-ANAANNNNAGAGAGGGG 156
* ** * * ** *** * * * ** ** * * ** *
consensus_13983#0 GACAACCAGTTCAAGGTCGGCGACGTCGTCGAGCTCCGCCGCTCCCGCCCCATCTCCAAG 360
consensus_13983#1 GAGAGGTAANA-GAGACNANCGGAAGNNGNGAAANGGGCNAANGGGAGNAGG------AG 209
** * * ** ** ** ** **
consensus_13983#0 ACCAAGCACTTCCTCGCCGTCCCCCTCCCCCCGCGCGACACCCGCCGCAAGTCCCAGCTC 420
consensus_13983#1 GGGGANGGNNNGAGGGNAGAGNANATCCCCCCCNGGGGGNC--GCCGCAAGTCCCAGCTC 267
* * * ******* * * * *****************
consensus_13983#0 CTCCCGCCTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCCTCCT 480
consensus_13983#1 CTCCCGCNTCTCCAGTCCCAGTCCCAGTCCCAAGACCAGGACCAGCCACCCACGCNTCCT 327
******* *********************************************** ****
consensus_13983#0 CCTTCCTCCGATTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATC 540
consensus_13983#1 CCTTCCTCCNGTTGATGGATTTTTCTTCTCCCGTAATCGTAAATTCGTAATGTAATAATC 387
********* *************************************************
consensus_13983#0 TGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCA 600
consensus_13983#1 TGTGCTGTACTATGTACTCCATTGATTTTTATTTGCTCTGGATTTCGAACTTCCCCAGCA 447
************************************************************
consensus_13983#0 GCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAAC 660
consensus_13983#1 GCAATGCTATGTTCCCTTTTCATTTCATCTGCTCATATGCATGTTGTTACTCAGTGAAAC 507
************************************************************
consensus_13983#0 CATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGTGTAATTCTGTTATCCTAGC 720
consensus_13983#1 CATACTACCAATATAATGCTACTAGAGTAGAATGTGCTTGNGTAATTCTGTTATCCTAGC 567
**************************************** *******************
consensus_13983#0 CCCCATCCCATCGAAGAAATTATTTAGGGCTTCTATAGCATCGAAAGACTAAAAGAACTC 780
consensus_13983#1 ------------------------------------------------------------
consensus_13983#0 AATAACCTTCGACTAGTGATACAACACCTCCGAACTACGTTCCCGGTCTTCAGCAAGCTT 840
consensus_13983#1 ------------------------------------------------------------
consensus_13983#0 CCCGGTTTCATTGTGATGGTTCCTAATATGATTCGAGAATTTCAATTTGATATTTGTTTT 900
consensus_13983#1 ------------------------------------------------------------
consensus_13983#0 AAACCATCCGGGAAACTTGTTTATACATGATACTGGTAGAATTCTACTAAAAAAAAAAAA 960
consensus_13983#1 ------------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||