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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_13992#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1240 fasta sequence
[CTCCACTCCATCACCTCCTGCTTGAGCAAGCAAGCAAGCAATCGCTGCAGCCAACTGTTCGACCAGAGCGAGTTAGCCATGGCGTACAGAGTTCTTGAGGTGACCCTCCACTCGGCGAGGGACCTGAAGAACGTCAACTTCATCTCGCGCATGGAGGTGTACGCGGTGGCGACCATCTCCGGCGACCCGCTGACGCGGCAGTGCACGCCGCCGGACCCCTACGGCGGCCGCCACCCGGCCTGGAACGCCACGCTCCGCTTCACCGTCCCGCCTACCGCCGCCTCCGCCGCCGGCTGCCTCCACGTCCTCCTCCGCGCCGAGCGCTCCCTCGGCGACCGCGACATCGGCGAGGTCATCATCCCGCTCGCCGACGTCCTCTCCGGCCCCTACGACCTCGGCGCCCGCCCGCCGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCGAGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCGTCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGCCGCAGCTGTTCGAGACCGCTCCTCCCTCGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTCCACCACCCGCCAAGCTGTCGCCGCCGCCACCGCCACAGACACAGACACAGCCGCTGGCAAAG-CCGCCGGCGCCGGCGACGCCGTCGCGAGCTGGCGGGCACGTGGCGGCGCTGGCGCCACCTGCGGTGGCGAAGGCCGACAGGCACGTGTCGACGCCGTCACCGGCGAAGGCCGACTGGCAGATGGTGGGCACGCCGACGGCGACGAAAGGGGCGAGCAAGCATGGCAGCCTGGAGTTCGAGCGGGGGCTCAACGCCGGGCTGGTCGGCGGCGCCATCGGCGGGATGCTGGTCGGCACCGAGATGGTGTCCGACGCGGCGTTCTACCACGCCGGCTACAGGGCCGGGCTCGCCGACCGCGACGGATGGGCCGTCTACTAAACCGTCGTCGCCATGGCTGCAGGTGCAGCGCCATGCATGGTCGGTCGGCGAAGATGCTTAGCTGAATAAAAGTCTCTGGTTTTCTTTTTTTGGCCTTTTGAGATTAGCTCAATAAAAGTCGATGAAATTTACTTTGGCTGAGAGTTTGTAACTCTTCCTCTTCGGCTAGTGAATTAATCGACTTGTTGTATATATTTTGTTACTGGTTATGATGTAATATATGGCCACG]
[+] EMBL AK061154 [CTCCACTCCATCACCTCCTGCTTGAGCAAGCAAGCAAGCAATCGCTGCAGCCAACTGTTCGACCAGAGCGAGTTAGCCATGGCGTACAGAGTTCTTGAGGTGACCCTCCACTCGGCGAGGGACCTGAAGAACGTCAACTTCATCTCGCGCATGGAGGTGTACGCGGTGGCGACCATCTCCGGCGACCCGCTGACGCGGCAGTGCACGCCGCCGGACCCCTACGGCGGCCGCCACCCGGCCTGGAACGCCACGCTCCGCTTCACCGTCCCGCCTACCGCCGCCTCCGCCGCCGGCTGCCTCCACGTCCTCCTCCGCGCCGAGCGCTCCCTCGGCGACCGCGACATCGGCGAGGTCATCATCCCGCTCGCCGACGTCCTCTCCGGCCCCTACGACCTCGGCGCCCGCCCGCCGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCGAGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCGTCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGCCGCAGCTGTTCGAGACCGCTCCTCCCTCGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTCCACCACCCGCCAAGCTGTCGCCGCCGCCACCGCCACAGACACAGACACAGCCGCTGGCAAAG CCGCCGGCGCCGGCGACGCCGTCGCGAGCTGGCGGGCACGTGGCGGCGCTGGCGCCACCTGCGGTGGCGAAGGCCGACAGGCACGTGTCGACGCCGTCACCGGCGAAGGCCGACTGGCAGATGGTGGGCACGCCGACGGCGACGAAAGGGGCGAGCAAGCATGGCAGCCTGGAGTTCGAGCGGGGGCTCAACGCCGGGCTGGTCGGCGGCGCCATCGGCGGGATGCTGGTCGGCACCGAGATGGTGTCCGACGCGGCGTTCTACCACGCCGGCTACAGGGCCGGGCTCGCCGACCGCGACGGATGGGCCGTCTACTAAACCGTCGTCGCCATGGCTGCAGGTGCAGCGCCATGCATGGTCGGTCGGCGAAGATGCTTAGCTGAATAAAAGTCTCTGGTTTTCTTTTTTTGGCCTTTTGAGATTAGCTCAATAAAAGTCGATGAAATTTACTTTGGCTGAGAGTTTGTAACTCTTCCTCTTCGGCTAGTGAATTAATCGACTTGTTGTATATATTTTGTTACTGGTTATGATGTAATATATGGCCACG]
[+] EMBL AK099020 [ CCATCACCTCCTGCTTGAGCAAGCAAGCAAGCAATCGCTGCAGCCAACTGTTCGACCAGAGCGAGTTAGCCATGGCGTACAGAGTTCTTGAGGTGACCCTCCACTCGGCGAGGGACCTGAAGAACGTCAACTTCATCTCGCGCATGGAGGTGTACGCGGTGGCGACCATCTCCGGCGACCCGCTGACGCGGCAGTGCACGCCGCCGGACCCCTACGGCGGCCGCCACCCGGCCTGGAACGCCACGCTCCGCTTCACCGTCCCGCCTACCGCCGCCTCCGCCGCCGGCTGCCTCCACGTCCTCCTCCGCGCCGAGCGCTCCCTCGGCGACCGCGACATCGGCGAGGTCATCATCCCGCTCGCCGACGTCCTCTCCGGCCCCTACGACCTCGGCGCCCGCCCGCCGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCGAGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCGTCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGCCGCAGCTGTTCGAGACCGCTCCTCCCTCGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTCCACCACCCGCCAAGCTGTCGCCGCCGCCACCGCCACAGACACAGACACAGCCGCTGGCAAAG CCGCCGGCGCCGGCGACGCCGTCGCGAGCTGGCGGGCACGTGGCGGCGCTGGCGCCACCTGCGGTGGCGAAGGCCGACAGGCACGTGTCGACGCCGTCACCGGCGAAGGCCGACTGGCAGATGGTGGGCACGCCGACGGCGACGAAAGGGGCGAGCAAGCATGGCAGCCTGGAGTTCGAACGGGGGCTCAACGCCGGGCTGGTCGGCGGCGCCATCGGCGGGATGCTGGTCGGCACCGAGATGGTGTCCGACGCGGCGTTCTACCACGCCGGCTACAGGGCCGGGCTCGCCGACCGCGACGGATGGGCCGTCTACTAAACCGTCGTCGCCATGGCTGCAGGTGCAGCGCCATGCATGGTCGGTCGGCGAAGATGCTTAGCTGAATAAAAGTCTCTGGTTTTCTTTTTTTGGCCTTTTGAGATTAGCTCAATAAAAGTCGATGAAATTTACTTTGGCTGAGAGTTTGTAACTCTTCCTCTTCGGCTAGTGAATTAATCGACTTGTTGTATATATTTTGTTACTGGTTATGATGTAATATATGGCC ]
[+] EMBL CB646058 [ TGCTTGAGCTAGCAAGCAAGCAATCGCTGCAGCCAACTGTTCGACCAGAGCGAGTTAGCCATGGCGTACAGAGTTCTTGAGGTGACCCTCCACTCGGCGAGGGACCTGAAGAACGTCAACTTCATCTCGCGCATGGAGGTGTACGCGGTGGCGACCATCTCCGGCGACCCGCTGACGCGGCAGTGCACGCCGCCGGACCCCTACGGCGGCCGCCACCCGGCCTGGAACGCCACGCTCCGCTTCACCGTCCCGCCTACCGCCGCCTCCGCCGCCGGCTGCCTCCACGTCCTCCTCCGCGCCGAGCGCTCCCTCGGCGACCGCGACATCGGCGAGGTCATCATCCCGCTCGCCGACGTCCTCTCCGGCCCCTACGACCTCGGCGCCCGCCCGCCGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCGAGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCGTCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGCCGCAGCTGTTCGAGACCGCTCCTCCCTCGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTCCACCACCCGCCAAGCTGTCGCCGCCGCCACCGCCACAGACACAGACACAGCCGCTGGCAAAG CCGCCGGCGCCGGCGACGCCGTCGCGAGCTGGTGGGCACGTGGCGGCGCTGGCGCCACCTGCGGTGGCGAAGGCCGACAGGC ]
[+] EMBL BE040840 [ AGCAATCGCTGCAGCCAACTGTTCGACCAGAGCGAGTTAGCCATGGCGTACAGAGTTCTTGAGGTGACCCTCCACTCGGCGAGGGACCTGAAGAACGTCAACTTCATCTCGCGCATGGAGGTGTACGCGGTGGCGACCATCTCCGGCGACCCGCTGACGCGGCAGTGCACGCCGCCGGACCCCTACGGCGGCCGCCACCCGGCCTGGAACGCCACGCTCCGCTTCACCGTCCCGCCTACCGCCGCCTCCGCCGCCGGCTGCCTCCACGTCCTCCTCCGCGCCGAGCGCTCCCTCGGCGACCGCGACATCGGCGAGGTCATCATCCCGCTCGCCGACGTCCTCTCCGGCCCCTACGACCTCGGCGCCCGCCCGCCGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCGAGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCGTCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGNCGCAGCTGTTCGAGACCGCTCCTCCCTCGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTCCACCACCCGCCAAGCTGTCGCCGNCGCCACCGNCACAGACACAGACACAGNCGCTGGCAAAGCCCGCC GCGCCGGCGACGCCGTCNCGAGCTGGCGGGCACGTTGCGGCGCTGGCGCCACCTGCGGTGGCGAAGGCC ACAGGCACGTGTCGACGCCGTCACCGG GAAGGCCG CTGGCAAAT GT GGCACGCCCACGG GACCAAAGGGcaac ]
[-] EMBL CB646059 [ CGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCGAGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCGTCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGCCGCAGCTGTTCGAGACCGCTCCTCCCTCGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTCCACCACCCGCCAAGCTGTCGCCGCCGCCACCGCCACAGACACAGACACAGCCGCTGGCAAAG CCGCCGGCGCCGGCGACGCCGTCGCGAGCTGGTGGGCACGTGGCGGCGCTGGCGCCACCTGCGGTGGCGAAGGCCGACAGGCACGTGTCGACGCCGTCACCGGCGAAGGCCGACTGGCAGATGGTGGGCACGCCGACGGCGACGAAAGGGGCGAGCAAGCATGGCAGCCTGGAGTTCGAGCGGGGGCTCAACGCCGGGCTGGTCGGCGGCGCCATCGGCGGGATGCTGGTCGGCACCGAGATGGTGTCCGACGCGGCGTTCTACCACGCCGGCTACAGGGCCGGGCTCGCCGACCGCGACGGATGGGCCGTCTACTAAACCGTCGTCGCCATGGCTGCAGGTGCAGCGCCATGCATGGTCGGTCGGCGAAGATGCTTAGCTGAATAAAAGTCTCTGGTTTTCTTTTTTTGGCCTTTTGAGATTAGCTCAATAAAAGTCGATGAAATT ]
consensusID : consensus_13992#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1069 fasta sequence
[TCGTCGAATTCGGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGC-GGTGGC-GGCCATGGCGCAGAGGACGCTGGAGCTGACGCTGATCTCGGCCAAGGATCTCAAGGACGTGAACCTCCTCTCCAAGATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGCTCGCGGCAGCGGA-TCGCCACCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCCGCCCCGCTCCGGTTCACCGTCCCGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCGGCGACCGCGACGTCGGCGAGGTCCACA-TCCCCCT-CT--CGG-AGCTCCTCTCCGGCGCCCCCGACGGCGCCGTCCCCGCCAAGTTCGTCTCCTACCAGGTCCGCAAGATCTCCTCCGGGAAGCCACAGGGCGTCCTCAATTTCTCCTACAAGATCGGCGAGGT-AACCCAATCCGGCTCCTACCCTGGTGCCTCTCCTCCGGTCGCGTACGGCCAAGCTCCACCGGC-GCCAGCTTACCCGCCCTCCGCCGCCGCCGCCGCGGCCTACCCGCCCCAATCCACCTACCCACCACCGACCGCCTACCCAACGGCAGCGAAGGCCGATGGGTCAGCCGCCGCGGCCTACCCACCCCAGTCCGCCTACCCACCACCGGGCAAGGGAAACGAGCCATCGACGGCTTACCCACCTCCCGCCGGCTA-CCCGCCGGCGACCGG-AAGTAGTAAGCCGGCGAAGGCGG-GTGA-GCCGGTGACGGCGTA-CCCAGCCGCCGCGGGGCCGAGCACCGCCGCGCCATACGGCACGGC-GCCACCGCCGCAGTACGGCTAC-GGGTACCCGGCCCAGCCGC-C-GCC-GCCG-CAAGCCGGCTACGGCTACCCACCCCCGCC-GCCGCAAGCCGGCTACGGCGGCGGCTACGGCTACCCGCCGCAGGCTGGGTACGGCGGCTACCAGCAGCAGGCCGTGAAGCCGGCGAAGAAGAACAACTTCGGGATGGGACTCGGAGCCGG]
[+] EMBL AK100995 [TCGTCGAATTCGGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGC GGCGGC GGCCATGGCGCAGAGGACGCTGGAGCTGACGCTGATCTCGGCCAAGGATCTCAAGGACGTGAACCTCCTCTCCAAGATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGCTCGCGGCAGCGGA TCGCCACCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCCGCCCCGCTCCGGTTCACCGTCCCGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCGGCGACCGCGACGTCGGCGAGGTCCACA TCCCCCT CT CGG AGCTCCTCTCCGGCGCCCCCGACGGCGCCGTCCCCGCCAAGTTCGTCTCCTACCAGGTCCGCAAGATCTCCTCCGGGAAGCCACAGGGCGTCCTCAATTTCTCCTACAAGATCGGCGAGGT AACCCAATCCGGCTCCTACCCTGGTGCCTCTCCTCCGGTCGCGTACGGCCAAGCTCCACCGGC GCCAGCTTACCCGCCCTCCGCCGCCGCCGCCGCGGCCTACCCGCCCCAATCCACCTACCCACCACCGACCGCCTACCCAACGGCAGCGAAGGCCGATGGGTCAGCCGCCGCGGCCTACCCACCCCAGTCCGCCTACCCACCACCGGGCAAGGGAAACGAGCCATCGACGGCTTACCCACCTCCCGCCGGCTA CCCGCCGGCGACCGG AAGTAGTAAGCCGGCGAAGGCGG GTGA GCCGGTGACGGCGTA CCCAGCCGCCGCGGGGCCGAGCACCGCCGCGCCATACGGCACGGC GCCACCGCCGCAGTACGGCTAC GGGTACCCGGCCCAGCCGC C GCC GCCG CAAGCCGGCTACGGCTACCCACCCCCGCC GCCGCAAGCCGGCTACGGCGGCGGCTACGGCTACCCGCCGCAGGCTGGGTACGGCGGCTACCAGCAGCAGGCCGTGAAGCCGGCGAAGAAGAACAACTTCGGGATGGGACTCGGAGCCGG]
[+] EMBL AK120801 [ TCGAATTCGGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGC GGTGGC GGCCATGGCGCAGAGGACGCTGGAGCTGACGCTGATCTCGGCC AGGATCTCAAGGACGTGAACCTCCTCTCCAAGATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGCTCGCGGCAGCGGA TCGCCACCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCCGCCCCGCTCCGGTTCACCGTCCCGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCGGCGACCGCGACGTCGGCGAGGTCCACA TCCCCCT CT CGG AGCTCCTCTCCGGCGCCCCCGACGGCGCCGTCCCCGCCAAGTTCGTCTCCTACCAGGTCCGCAAGATCTCCTCCGGGAAGCCACAGGGCGTCCTCAATTTCTCCTACAAGATCGGCGAGGT AACCCAATCCGGCTCCTACCCTGGTGCCTCTCCTCCGGTCGCGTACGGCCAAGCTCCACCGGC GCCAGCTTACCCGCCCTCCGCCGCCGCCGCCGCGGCCTACCCGCCCCAATCCACCTACCCACCACCGACCGCCTACCCAACGGCAGCGAAGGCCGATGGGTCAGCCGCCGCGGCCTACCCACCCCAGTCCGCCTACCCACCACCGGGCAAGGGAAACGAGCCATCGACGGCTTACCCACCTCCCGCCGGCTA CCCGCCGGCGACCGG AAGTAGTAAGCCGGCGAAGGCGG GTGA GCCGGTGACGGCGTA CCCAGCCGCCGCGGGGCCGAGCACCGCCGCGCCATACGGCACGGC GCCACCGCCGCAGTACGGCTAC GGGTACCCGGCCCAGCCGC C GCC GCCG CAAGCCGGCTACGGCTACCCACCCCCGCC GCCGCAAGCCGGCTACGGCGGCGGCTACGGCTACCCGCCGCAGGCTGGGTACGGCGGCTACCAGCAGCAGGCCGTGAAGCCGGCGAAGAAGAACAACTTCGGGATGGGACTCGGAGCCGG]
[+] EMBL AA754099 [ GAATTCGGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGC GGTGGC GGCCATGGCGCA AGGACTCTGGATCTGACGCTGATCTCGGCCAATGATCTCAACGACGTGAACCTCCTCTCCAATATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGCTCGCGGCAGCGGA TCGCCACCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCCGCCCCGCTCCGGTTCACCGTCCCGG CTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCCGCCACCTCTACTTC GCAAGGTCCACATTCCCCCTNCTTCCGGAAGCTCCTCTCCccgg ]
[+] EMBL C72451 [ GGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGC GGTGGC GGCCATGGCGCAGAGGACGCTGGAGCTGACGCTGATCTCGGCCAAGGATCTCAAGGACGTGAACCTCCTCTCCAAGATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCNGCTCGCGGCAG GGATTCGCCACCGANNGCGCCGGTGGCCGCAACCCGGCGTGGAACNGC ACCCGCTCCGGTTCAACGTCNAGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGA CGGGCCCTCGG GACCGCGACGTCGGCGAGGT CANA T CCCCT CT CGG AG TCCTCTCCGGCG CCCCGAAGGCG CGTCCCCG CAAATTCGTCT CTAACA GTCCG AANATTTCtc ]
[+] EMBL AU172637 [ GGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGCAGGTGGCAGGCCATGGCGCAGAGGACGCTGGAGCTGACGCTGATCTCGGCCAAGGATCTCAAGGACGTGAACCTCCTCTCCAAGATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGNTCGCGGCAGCGGA TCGCCACCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCCGCCCCGCTCCGGTTCACCGTCCCGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCGGCGACCGCGACGTCGGCGAGGTCCACA TCCCCCT CT CGG AGCTCCTCTCCGGCGCCCCCGACGGCGCCGTCCCCGCCAAGTTC ]
[+] EMBL CA758768 [ TCGAATTTCACCCAAAGTCCACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGC GGTGGC GGCCATGGCGCACAGGACGCTGGAGCTGACGCTGATCTCGGCCAAGGATCTCAAGGACGTGAACCTCCTCTCCNAGATGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGCTCGCGGCAGCGGA TCGCCACCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCCGCCCCGCTCCGGTTCACCGTCCCGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCGGCGACCGCGACGTCAGCGAGGTCCACA TCCCCCT CT CGG AGCTCCTCTCCGGCGCCCCCGACGGGGCCGTCCCCGCCAAGGTCGTCTCCTACCAAGTCCGCAAGATCTCCTCCGGGAAGCCACAGGGCGTCCTCCATTTCTCCCACGAGATCGGCGAGGTGAACCCAATCCGGCTCCTACCCTGGTGCCTCTCCTCCGGTCGGGTACGGGCAAGGTTCGCCGGCGGCCGGTTTACCCGGCCTCCGCCGGCGCCGGCGTGGCCTACCC CGCCCATGCACCTACCagca ]
[+] EMBL BE228398 [ TCCGCAAGATCTCCTCCGGGAAGCCACAGGGCGTCCTCAATTTCTCCTACAAGATCGGCGANGT AACCCAATCCGGCTCCTACCCTGGTGCCTCTCCTCCGGTCGCGTACGGCCAAGCTCCACCGGC GCCAGCTTACCCGCCCTCCGCCGCCGCCGCCGCGGCCTACCCGCCCCAATCCACCTACCCACCACCGACCGCCTACCCAACGGCAGCGAANGCCGATGGGTCAGCCGCCGCGGCCTACCCACCCCAGTCCGCCTACCCACCACCGGGCAAGGGAAACGAGCCATCGACGGCTTACCCACCTCCCGCCGGCTA CCCGCCGGCGACCGG AAGTAGTAAGCCGGCGAAAGCGG GTGA GCCGGTGACGGCGTA CCCAGCCGCCGCGGGGCCGANCACCGCCGCGCCATACGGCACGGC GCCACCGCCGCAGTACGGCTAC GGGTA CCGGCCCAGCCGC C GCC GCCG CAAGCCNGCTNCNGGTA CCA CCCCGCC GCCGCAAGCCGGCTACNGGGGNGGNTACGGCTA CCNCCNCAAGCTGGGTNCGG GGGTACCANCANCAGGC ]
[+] EMBL BM422062 [ CACCTCCCGCC GTTACCCCGCCGGCGACCGGAAAGTAGTAACCCGGCGAAAGCGGTGTGACCCCGGTGACGGCGTACCCCAGCCGCCGC GGGCCGAGCACCGCCGCGCCATACGGCACGGCAGCCACCGCCGCAGTACGGCTACAGGGTACCCGGCCCAGCCGCACAGCCAGCCGACAAGCCGGCTACGGCTACCCACCCCCGCCAGCCGCAAGCCGGGTACGGCGGCGGCTACGGCTACCCGCCGCAGGCTGGGTACGGCGGCTACCAGCAGCAGGCCGTGAAGCCGGCGAAGAAGAACAACTTCGGGATGGGACTCGGAGCCGG]
consensusID : consensus_13992#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 394 fasta sequence
[CATAGGGTCNGCAANATCTCCTCCGGGAAGCCACAGGGCGTCCTCNATTTCTCCTACAAGATCNGCGAGGTAANCCAATCCGGCTCCTACCCTGGTGCCTCNCNTCAGGTCNCGTACGGCCAAGCTCAACCNGCNCCAGCTTNCCCGCCATCCGCCGATNCCGCCGCGGNCTACCCNCCCCAAATCCACCTACCGACNACCTGANCGCGGGACCAACTGCAGCGGAAAGCCAATGGGTCNTCCNCCGCGGCCTATCACCCGAGNCCGCCTAACCNCCACCGGGCGAGNGAAACCAGNCAACTACGGNTTGGACACCTCCCGGCGGNTACCCGACGGGGANAGGNACTNCTNNACCCGNGAANGNGGGTTAANCGGTGACCGGGTGGCCATCCTC]
[+] EMBL BE228399 [CATAGGGTCNGCAANATCTCCTCCGGGAAGCCACAGGGCGTCCTCNATTTCTCCTACAAGATCNGCGAGGTAANCCAATCCGGCTCCTACCCTGGTGCCTCNCNTCAGGTCNCGTACGGCCAAGCTCAACCNGCNCCAGCTTNCCCGCCATCCGCCGATNCCGCCGCGGNCTACCCNCCCCAAATCCACCTACCGACNACCTGANCGCGGGACCAACTGCAGCGGAAAGCCAATGGGTCNTCCNCCGCGGCCTATCACCCGAGNCCGCCTAACCNCCACCGGGCGAGNGAAACCAGNCAACTACGGNTTGGACACCTCCCGGCGGNTACCCGACGGGGANAGGNACTNCTNNACCCGNGAANGNGGGTTAANCGGTGACCGGGTGGCCATCCTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_13992#1 TCGTCGAATTCGGATACAAATCTGATCAGTTCGATTTCGATCGAATTTCACCCAAAGTCC 60
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 -----------------------------CTCCACTCCATCACCTCCTGCTTGAGCAAGC 31
consensus_13992#1 ACACAAACTTTCGATTCGATTTCTCCGATCTCGCAGCGGTGGCGGCCATGGCGCAGAGGA 120
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 AAGCAAGCAATCGCTGCAGCCAACTGTTCGACCAGAGCGAGTTAGCCATGGCGTACAGAG 91
consensus_13992#1 CGCTGGAGCTGACGCTGATCTCGGCCAAGGATCTCAAGGACGTGAACCTCCTCTCCAAGA 180
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 TTCTTGAGGTGACCCTCCACTCGGCGAGGGACCTGAAGAACGTCAACTTCATCTCGCGCA 151
consensus_13992#1 TGGAGGTCTACGCCGTCGTCTCGCTCTCCGGCGACCGCCGCTCGCGGCAGCGGATCGCCA 240
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 TGGAGGTGTACGCGGTGGCGACCATCTCCGGCGACCCGCTGACGCGGCAGTGCACGCCGC 211
consensus_13992#1 CCGACCGCGCCGGTGGCCGCAACCCGGCGTGGAACGCC--GCCCCGCTCCGGTTCACCGT 298
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 CGGACCCCTACGGCGGCCGCCACCCGGCCTGGAACGCCACGCTCCGCTTCACCGTCCCGC 271
consensus_13992#1 CC----CGGCCTCCGGCGCGGGTTCCCTCCACGTCCTCCTCCGCGCCGAGCGCGCCCTCG 354
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 CTACCGCCGCCTCCGCCGCCGGCTGCCTCCACGTCCTCCTCCGCGCCGAGCGCTCCCTCG 331
consensus_13992#1 GCGACCGCGACGTCGGCGAGGTCCACATCCCCCTCTCGGAGCTCCTCTCCGGCGCCCCCG 414
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 GCGACCGCGACATCGGCGAGGTCATCATCCCGCTCGCCGACGTCCTCTCCGGCCCCTACG 391
consensus_13992#1 AC---GGCGCCGTCCCCGCCAAGTTCGTCTCCTACCAGGTCCGCAAGATCTCCTCCGGGA 471
consensus_13992#2 --------------------------------CATAGGGTCNGCAANATCTCCTCCGGGA 28
consensus_13992#0 ACCTCGGCGCCCGCCCGCCGCAGTTCGCCTCCTACCAGGTCCGCAAGCTCCATCGCTCCG 451
* **** **** ** *
consensus_13992#1 AGCCACAGGGCGTCCTCAATTTCTCCTACAAGATCGGCGAGGTAACC------CAATCCG 525
consensus_13992#2 AGCCACAGGGCGTCCTCNATTTCTCCTACAAGATCNGCGAGGTAANC------CAATCCG 82
consensus_13992#0 AGACCCGCGGCGTGCTCCACCTCTCCTACCGCCTCGGCCCCGTCGTCGCGCCGCAGTCCG 511
** * * ***** *** * ******** ** ** ** * ** ****
consensus_13992#1 GCT---CCTACCC--TGGTGCCTCTCCTCCGGTCGCGTACGGCCAAG----CTCCACCGG 576
consensus_13992#2 GCT---CCTACCC--TGGTGCCTCNCNTCAGGTCNCGTACGGCCAAG----CTCAACCNG 133
consensus_13992#0 TCTTCGCCTACCCGGCGCCGCCGCCGCCGCCGCCGCAGCTGTTCGAGACCGCTCCTCCCT 571
** ******* * *** * * * * * * ** *** **
consensus_13992#1 CGCCAGCTTAC--CCGCCCTCCGCCG-----CCGCCGCCGCGGCCTACCCGCCCCAA-TC 628
consensus_13992#2 CNCCAGCTTNC--CCGCCATCCGCCG-----ATNCCGCCGCGGNCTACCCNCCCCAAATC 186
consensus_13992#0 CGCCGCCTTACGTTCCCCCACCACCGGACGCCTACCTTCGTAAACCGTCGCCGCCGTCTC 631
* ** *** * * ** ** *** ** ** * * * ** **
consensus_13992#1 CACCTACCCACCACC-GACCGCCTACCCAACGGCAGCG---------AAGGCCGATGGGT 678
consensus_13992#2 CACCTACCGACNACCTGANCGCGGGACCAACTGCAGCGG--------AAAGCCAATGGGT 238
consensus_13992#0 CACC-ACCCGCCAAGCTGTCGCCGCCGCCACCGCCACAGACACAGACACAGCCGCTGGCA 690
**** *** * * *** * ** ** * * *** ***
consensus_13992#1 CAGCCGCCGCGGCC-----TACCCACCCCAGTCCGCCTACCCACCACCGGGCAAGGGAAA 733
consensus_13992#2 CNTCCNCCGCGGCC-----TATC-ACCCGAGNCCGCCTAACCNCCACCGGGCGAGNGAAA 292
consensus_13992#0 AAGCCGCCGGCGCCGGCGACGCCGTCGCGAGCTGGCGGGCACGTGGCGGCGCTGGCGCCA 750
** *** *** * * * ** ** * * * ** * * *
consensus_13992#1 CGAGC--CATCGACGGCT--TACCCACCTCCCGCCG--GCTACC--CGCCGGC-GACCGG 784
consensus_13992#2 CCAGN--CAACTACGGNT--TGGACACCTCCCGGCG--GNTACC--CGACGGG-GANAGG 343
consensus_13992#0 CCTGCGGTGGCGAAGGCCGACAGGCACGTGTCGACGCCGTCACCGGCGAAGGCCGACTGG 810
* * * * ** *** * ** ** * *** ** ** ** **
consensus_13992#1 AAG-TAGTAAGC-CGGCGAAGGCGGGTGAGCCGGTGACGGCGTACCCAGCCGCCGCGGGG 842
consensus_13992#2 NAC-TNCTNNAC-CCGNGAANGNGGGTTAANCGGTGACCGGGTGGCCATCCTC------- 394
consensus_13992#0 CAGATGGTGGGCACGCCGACGGCGACGAAAGGGGCGA--GCAAGCATGGCAGCCTGGAGT 868
* * * * * ** * * * ** ** * * *
consensus_13992#1 CCGAGCACCGCCGCGCCATACGGCACGGCGCCACCGCCGCAGTACGGCTACGGGTACCCG 902
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 TCGAGCGGGGGCTCAACGCCGGGCTGGTCGGCGGCGCCATCGGCGGGATGCTGGTCGGCA 928
consensus_13992#1 GCCCAGCCGCCGCCGCCGCAAGCCGGCTACGGCTACCCACCCCCGCCGCCGCAAGCCGGC 962
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 CCGAGATGGTGTCCGACGCG-GCGTTCTACCACGCCGGCTACAGGGCCGGGCTCGCCGAC 987
consensus_13992#1 TACGGCGGCGGCTACGGCTACCCGCCGCAGGCTGGGTACGGCGGCTAC--CAGCAGCAGG 1020
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 CGCGACGGATGGGCCGTCTACTAAAC-CGTCGTCGCCATGGCTGCAGGTGCAGCGCCATG 1046
consensus_13992#1 C-CGTGAAGCCGGCGAAGAAGAACAACTTCGGGATGGGACTCGGAGCCGG---------- 1069
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 CATGGTCGGTCGGCGAAGATGCTTAGCTGAATAAAAGTCTCTGGTTTTCTTTTTTTGGCC 1106
consensus_13992#1 ------------------------------------------------------------
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 TTTTGAGATTAGCTCAATAAAAGTCGATGAAATTTACTTTGGCTGAGAGTTTGTAACTCT 1166
consensus_13992#1 ------------------------------------------------------------
consensus_13992#2 ------------------------------------------------------------
consensus_13992#0 TCCTCTTCGGCTAGTGAATTAATCGACTTGTTGTATATATTTTGTTACTGGTTATGATGT 1226
consensus_13992#1 --------------
consensus_13992#2 --------------
consensus_13992#0 AATATATGGCCACG 1240
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||