These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1400#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2321 fasta sequence [CGTGACAACTTACCATTACCATCGCCAGCACAATGCGCCGCCACCGTCCCTACCTCGACGGCGTCGCCGCCGCCGCCGCAACCTTCCTCCTCGCCGTCCTCCTCCACGCGCCGCTCGCCGCCGGAGAGGACGAGCCTCCGCCATGGGTCCTGTGCGGGCCGTACCCTCCCAGCGGCAACTACTCGAAGAACGGCACGTACCAGGTCAACCTCGACCTCCTCTCCACCACCCTCCCCAAGAACACCTCCTCGTCTCCGGCCATGTACGCCACGGGCACCGTCGGCGACGTCCCCGACAAGGTGTACGGCCTCGCGCTGTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGCGCTGCGTCGCGGCCGCCCTCCGCGACGCGCCGCGGAGGTGCCCGCTCGTCAAGGACGTGCTCGTCTTCTACGACCTCTGCCAGCTCCGCTACTCCAACCGCGACTTCTTCCTCGACGATGACTACTTCGTCACCACCTACACCCTCCAGCGCTCCCGCCGCGTGGGCGCCGCGGCGGCGGCAGCGTTCGACGCGGCCGTCGCAGTGCTCGTCAACGCCACCGCGGACTACGCGGCGGCGGACTCGTCGAGGCGGTACGGCACGGGGGAGGAGGAGGGCGTCGACGGCGACAGCGACCGCCCCAAGATCTACGCGCTGGTGCAGTGCACGCCGGACAAGACGCCCGAAGTCTGCCGGACCTGCCTCTCGACGGTGATCGGGCAACTGCCCAAAGAATTCAGCGGGAGGACGGGAGGGGGCATGTTCGGGGTGTGGTGCAACTTCCGGTACGAGGTGTTCCCTTTCTTCTCCGGCCGCCCGCTGCTGCAGCTTCCGGCGTTCGTGGAGACGCCGCCGCCGCCGCCTTCGCCATCGGCGACCAGTGGAGAGAAAACGAAAAATAGGATTGGTACAGTTCTAGCGATAGTTATGCCTGCAATAGCTGCAATACTGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAATTATTCAATCAAATCGGACGTGTTCAGCTTCGGCGTTTTGGTATTAGAGATTATCACCGGAAGAAGAAACACTGGCTCATATGATAGTGGGCAAGATGTTGATCTCTTAAACCTAGTGTGGGAGCACTGGACAAGGGGAAACGTTGTAGAGCTGATTGATCCATCCATGGGCGACCATCCTCCAATCGAGCAGATGTTGAAGTGCATCCACATCGGGTTGTTGTGTGTTCAGAAAAAACCTGCAAGCAGGCCGACGATTTCGTCAGTAAACATCATGCTTAGCAGCAACACTGTTCGTCTCCCTTCTCTATCCAGGCCGGCGTTCTGCATCCAGGAGGTTAGTGCCAGTGACAGCTCTAATCCGTATTCAGAACGCTATCCAAGACCAAGACATTCCGGGTATTCTGATAATTCAACAGTGGTGTCTTCGAATGATTTGTCAATCACAGAGCTTGTGCCGAGATGAATCCTGAATTTTTAGTTCAGTCGTGTACAATGCTTCTAGATATTACATATGAGGTTGATGCGTGGGGATGCCCTACTGCATCACGTCAGTATATTATTATTTATTGAATCCACCATTGTGGCTGTAATTAGAATTAATAAGATGGTATTTCTTAGAAATTGAAACTGACCGGAGTGGATAATAAAAGTCAGGGGTGATCAC] [+] EMBL AK111650 [CGTGACAACTTACCATTACCATCGCCAGCACAATGCGCCGCCACCGTCCCTACCTCGACGGCGTCGCCGCCGCCGCCGCAACCTTCCTCCTCGCCGTCCTCCTCCACGCGCCGCTCGCCGCCGGAGAGGACGAGCCTCCGCCATGGGTCCTGTGCGGGCCGTACCCTCCCAGCGGCAACTACTCGAAGAACGGCACGTACCAGGTCAACCTCGACCTCCTCTCCACCACCCTCCCCAAGAACACCTCCTCGTCTCCGGCCATGTACGCCACGGGCACCGTCGGCGACGTCCCCGACAAGGTGTACGGCCTCGCGCTGTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGCGCTGCGTCGCGGCCGCCCTCCGCGACGCGCCGCGGAGGTGCCCGCTCGTCAAGGACGTGCTCGTCTTCTACGACCTCTGCCAGCTCCGCTACTCCAACCGCGACTTCTTCCTCGACGATGACTACTTCGTCACCACCTACACCCTCCAGCGCTCCCGCCGCGTGGGCGCCGCGGCGGCGGCAGCGTTCGACGCGGCCGTCGCAGTGCTCGTCAACGCCACCGCGGACTACGCGGCGGCGGACTCGTCGAGGCGGTACGGCACGGGGGAGGAGGAGGGCGTCGACGGCGACAGCGACCGCCCCAAGATCTACGCGCTGGTGCAGTGCACGCCGGACAAGACGCCCGAAGTCTGCCGGACCTGCCTCTCGACGGTGATCGGGCAACTGCCCAAAGAATTCAGCGGGAGGACGGGAGGGGGCATGTTCGGGGTGTGGTGCAACTTCCGGTACGAGGTGTTCCCTTTCTTCTCCGGCCGCCCGCTGCTGCAGCTTCCGGCGTTCGTGGAGACGCCGCCGCCGCCGCCTTCGCCATCGGCGACCAGTGGAGAGAAAACGAAAAATAGGATTGGTACAGTTCTAGCGATAGTTATGCCTGCAATAGCTGCAATACTGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAATTATTCAATCAAATCGGACGTGTTCAGCTTCGGCGTTTTGGTATTAGAGATTATCACCGGAAGAAGAAACACTGGCTCATATGATAGTGGGCAAGATGTTGATCTCTTAAACCTAGTGTGGGAGCACTGGACAAGGGGAAACGTTGTAGAGCTGATTGATCCATCCATGGGCGACCATCCTCCAATCGAGCAGATGTTGAAGTGCATCCACATCGGGTTGTTGTGTGTTCAGAAAAAACCTGCAAGCAGGCCGACGATTTCGTCAGTAAACATCATGCTTAGCAGCAACACTGTTCGTCTCCCTTCTCTATCCAGGCCGGCGTTCTGCATCCAGGAGGTTAGTGCCAGTGACAGCTCTAATCCGTATTCAGAACGCTATCCAAGACCAAGACATTCCGGGTATTCTGATAATTCAACAGTGGTGTCTTCGAATGATTTGTCAATCACAGAGCTTGTGCCGAGATGAATCCTGAATTTTTAGTTCAGTCGTGTACAATGCTTCTAGATATTACATATGAGGTTGATGCGTGGGGATGCCCTACTGCATCACGTCAGTATATTATTATTTATTGAATCCACCATTGTGGCTGTAATTAGAATTAATAAGATGGTATTTCTTAGAAATTGAAACTGACCGGAGTGGATAATAAAAGTCAGGGGTGATCAC] consensusID : consensus_1400#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 715 fasta sequence [TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTGTAAGTCTGCTAAAAATTATGATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAA] [+] EMBL CB685711 [TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAGAACAGACGTTTCTGTCCTGTAAGTCTGCTAAAAATTATGATTCAGTTAGTTCAGACGATATTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATTTTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTACCTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAGAGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTATTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAAGCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGATTCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGAAGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTAAGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTAATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1400#0 CGTGACAACTTACCATTACCATCGCCAGCACAATGCGCCGCCACCGTCCCTACCTCGACG 60 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 GCGTCGCCGCCGCCGCCGCAACCTTCCTCCTCGCCGTCCTCCTCCACGCGCCGCTCGCCG 120 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 CCGGAGAGGACGAGCCTCCGCCATGGGTCCTGTGCGGGCCGTACCCTCCCAGCGGCAACT 180 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ACTCGAAGAACGGCACGTACCAGGTCAACCTCGACCTCCTCTCCACCACCCTCCCCAAGA 240 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ACACCTCCTCGTCTCCGGCCATGTACGCCACGGGCACCGTCGGCGACGTCCCCGACAAGG 300 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 TGTACGGCCTCGCGCTGTGCCGCGGCGACGCCAACGCCTCCGCCTGCGAGCGCTGCGTCG 360 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 CGGCCGCCCTCCGCGACGCGCCGCGGAGGTGCCCGCTCGTCAAGGACGTGCTCGTCTTCT 420 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ACGACCTCTGCCAGCTCCGCTACTCCAACCGCGACTTCTTCCTCGACGATGACTACTTCG 480 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 TCACCACCTACACCCTCCAGCGCTCCCGCCGCGTGGGCGCCGCGGCGGCGGCAGCGTTCG 540 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ACGCGGCCGTCGCAGTGCTCGTCAACGCCACCGCGGACTACGCGGCGGCGGACTCGTCGA 600 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 GGCGGTACGGCACGGGGGAGGAGGAGGGCGTCGACGGCGACAGCGACCGCCCCAAGATCT 660 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ACGCGCTGGTGCAGTGCACGCCGGACAAGACGCCCGAAGTCTGCCGGACCTGCCTCTCGA 720 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 CGGTGATCGGGCAACTGCCCAAAGAATTCAGCGGGAGGACGGGAGGGGGCATGTTCGGGG 780 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 TGTGGTGCAACTTCCGGTACGAGGTGTTCCCTTTCTTCTCCGGCCGCCCGCTGCTGCAGC 840 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 TTCCGGCGTTCGTGGAGACGCCGCCGCCGCCGCCTTCGCCATCGGCGACCAGTGGAGAGA 900 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 AAACGAAAAATAGGATTGGTACAGTTCTAGCGATAGTTATGCCTGCAATAGCTGCAATAC 960 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAG 1020 consensus_1400#1 TGCTCATGGTTGTAGCATGCTTTTGTTGCTGGAAGAGGATCAAGAAGAGACGACCAGAAG 60 ************************************************************ consensus_1400#0 AACAGACGTTTCTGTCCT---------------------ATTCAGTTAGTTCAGACGATA 1059 consensus_1400#1 AACAGACGTTTCTGTCCTGTAAGTCTGCTAAAAATTATGATTCAGTTAGTTCAGACGATA 120 ****************** ********************* consensus_1400#0 TTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATT 1119 consensus_1400#1 TTCAGAGCATTGATTCGCTTATACTTGATCTACCAACAATACGAGTTGCTACAGATGATT 180 ************************************************************ consensus_1400#0 TTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTAC 1179 consensus_1400#1 TTGCTGATACTAAAATGATCGGCCAAGGAGGATTTGGTATGGTTTACAAGGGAGTCCTAC 240 ************************************************************ consensus_1400#0 CTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAG 1239 consensus_1400#1 CTGATGGCCAAGAAATAGCCGTGAAGAGGCTTTGCCAGAGTTCCAGACAAGGAATAGGAG 300 ************************************************************ consensus_1400#0 AGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTA 1299 consensus_1400#1 AGCTGAAAAGTGAGCTGATTTTGGTTGCTAAGCTTTACCACAAGAATCTAGTAAGGCTTA 360 ************************************************************ consensus_1400#0 TTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAA 1359 consensus_1400#1 TTGGTGTTTGCTTGGAGCAGCAAGAGAAAATACTTGTCTATGAATATATGCCAAATGGAA 420 ************************************************************ consensus_1400#0 GCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGAT 1419 consensus_1400#1 GCCTTGATATCGTTCTTTTCGATACCGACAAGAACAGGGAGCTAGATTGGGGGAAAAGAT 480 ************************************************************ consensus_1400#0 TCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGA 1479 consensus_1400#1 TCAAGATTATAAATGGGATTGCTCGAGGCTTGCAATACCTTCATGAAGATTCTCAATTGA 540 ************************************************************ consensus_1400#0 AGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTA 1539 consensus_1400#1 AGATAGTGCACCGGGACCTCAAAGCAAGCAACATCCTATTGGACTTTGATTACAGCCCTA 600 ************************************************************ consensus_1400#0 AGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTA 1599 consensus_1400#1 AGATTTCTGATTTTGGCTTAGCAAAGATATTTGGAGGGGATCAATCAGAAGATGTCACTA 660 ************************************************************ consensus_1400#0 ATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAATTATT 1659 consensus_1400#1 ATCGAATCGCCGGAACATATGGATACATGGCACCAGAATACGCTATGCGTGGTAA----- 715 ******************************************************* consensus_1400#0 CAATCAAATCGGACGTGTTCAGCTTCGGCGTTTTGGTATTAGAGATTATCACCGGAAGAA 1719 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 GAAACACTGGCTCATATGATAGTGGGCAAGATGTTGATCTCTTAAACCTAGTGTGGGAGC 1779 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ACTGGACAAGGGGAAACGTTGTAGAGCTGATTGATCCATCCATGGGCGACCATCCTCCAA 1839 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 TCGAGCAGATGTTGAAGTGCATCCACATCGGGTTGTTGTGTGTTCAGAAAAAACCTGCAA 1899 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 GCAGGCCGACGATTTCGTCAGTAAACATCATGCTTAGCAGCAACACTGTTCGTCTCCCTT 1959 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 CTCTATCCAGGCCGGCGTTCTGCATCCAGGAGGTTAGTGCCAGTGACAGCTCTAATCCGT 2019 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ATTCAGAACGCTATCCAAGACCAAGACATTCCGGGTATTCTGATAATTCAACAGTGGTGT 2079 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 CTTCGAATGATTTGTCAATCACAGAGCTTGTGCCGAGATGAATCCTGAATTTTTAGTTCA 2139 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 GTCGTGTACAATGCTTCTAGATATTACATATGAGGTTGATGCGTGGGGATGCCCTACTGC 2199 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 ATCACGTCAGTATATTATTATTTATTGAATCCACCATTGTGGCTGTAATTAGAATTAATA 2259 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 AGATGGTATTTCTTAGAAATTGAAACTGACCGGAGTGGATAATAAAAGTCAGGGGTGATC 2319 consensus_1400#1 ------------------------------------------------------------ consensus_1400#0 AC 2321 consensus_1400#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||