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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14000#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1641 fasta sequence
[TGGCCGCATTCGATGCCTCCGATATTCCCACGGCCAAGGGGCATGACGATGCAGGGGATGCAGAGGGTGCCCGGCGTGCCACCAGGGTTGATGCCGCTGCAGCGGCCATTCATGGGACCAGCTGGAGTTATCACAATGGGTGGGGGTGTGGGGCCTAGCCCTAACCAGCAGAAGCAGAAGAGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAGTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAGGTCCATTTCCGCCGTATTATTGCTCCTCATACTGATACAAACCTAGGAGATTGTTCTTTTCTCGACACTTGCCGTCACACAAAGACCTGCAAGTATGTCCACTACGAGCTTGACCAAACACCAGATATACCTCCAAT-GATGGCTGGTGCTCTTGCACCCCCAAGGCAAATAAGGCTCCAGAGAGCTGAATATTGTTCAGAAGTAGAGCTTGGAGAAGCTCAATGGATAAACTGTGACATCCGAAACTTCAGAATGGATATCTTAGGACAGTTTGGAGTAATTATGGCCGATCCCCCTTGGGATATTCATATGGAATTGCCATATGGCACAATGGCTGATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACT-GGTCGTGCAATGGAACTTGGTCGGGAGTGTTTGGAGCTCTGGGGTTACAAACGTGTGGAGGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATTATTCGAACTGGACGCACTGGTCATTGGTTGAATCATAGTAAAGAGCATTGCCTTGTTGGAATAAAAGGAAACCCTTTAGTCAACAGGAACATTGACACTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTG-AGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAA-TTGTTGGGTTTTGTAATGTTGGCAGACAT--CCATCTTGATAATGGAACG-CGTGAGCCATTACTGATTTAAAAAAAAAAAAAAAAA]
[+] EMBL AK070286 [TGGCCGCATTCGATGCCTCCGATATTCCCACGGCCAAGGGGCATGACGATGCAGGGGATGCAGAGGGTGCCCGGCGTGCCACCAGGGTTGATGCCGCTGCAGCGGCCATTCATGGGACCAGCTGGAGTTATCACAATGGGTGGGGGTGTGGGGCCTAGCCCTAACCAGCAGAAGCAGAAGAGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAGTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAGGTCCATTTCCGCCGTATTATTGCTCCTCATACTGATACAAACCTAGGAGATTGTTCTTTTCTCGACACTTGCCGTCACACAAAGACCTGCAAGTATGTCCACTACGAGCTTGACCAAACACCAGATATACCTCCAAT GATGGCTGGTGCTCTTGCACCCCCAAGGCAAATAAGGCTCCAGAGAGCTGAATATTGTTCAGAAGTAGAGCTTGGAGAAGCTCAATGGATAAACTGTGACATCCGAAACTTCAGAATGGATATCTTAGGACAGTTTGGAGTAATTATGGCCGATCCCCCTTGGGATATTCATATGGAATTGCCATATGGCACAATGGCTGATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACT GGTCTTGCAATGGAACTTGGTCGGGAGTGTTTGGAGCTCTGGGGTTACAAACGTGTGGAGGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATTATTCGAACTGGACGCACTGGTCATTGGTTGAATCATAGTAAAGAGCATTGCCTTGTTGGAATAAAAGGAAACCCTTTAGTCAACAGGAACATTGACACTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTG AGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAA TTGTTGGGTTTTGTAATGTTGGCAGACAT CCATCTTGATAATGGAACG CGTGAGCCAT ]
[+] EMBL AK101174 [TGGCCGCATTCGATGCCTCCGATATTCCCACGGCCAAGGGGCATGACGATGCAGGGGATGCAGAGGGTGCCCGGCGTGCCACCAGGGTTGATGCCGCTGCAGCGGCCATTCATGGGACCAGCTGGAGTTATCACAATGGGTGGGGGTGTGGGGCCTAGCCCTAACCAGCAGAAGCAGAAGAGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAGTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAGGTCCATTTCCGCCGTATTATTGCTCCTCATACTGATACAAACCTAGGAGATTGTTCTTTTCTCGACACTTGCCGTCACACAAAGACCTGCAAGTATGTCCACTACGAGCTTGACCAAACACCAGATATACCTCCAAT GATGGCTGGTGCTCTTGCACCCCCAAGGCAAATAAGGCTCCAGAGAGCTGAATATTGTTCAGAAGTAGAGCTTGGAGAAGCTCAATGGATAAACTGTGACATCCGAAACTTCAGAATGGATATCTTAGGACAGTTTGGAGTAATTATGGCCGATCCCCCTTGGGATATTCATATAGAATTGCCATATGGCACAATGGCTAATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACT GGTCGTGCAATGGAACTTGGTCGGGAGTGTTTGGAGCTCTGGGGTTACAAACGTGTGGAGGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATTATTCGAACTGGACGCACTGGTCATTGGTTGAATCATAGTAAAGAGCATTGCCTTGTTGGAATAAAAGGAAACCCTTTAGTCAACAGGAACATTGACACTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAGACCTGATGAGATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTG AGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAA TTGTTGGGTTTTGTAATGTTGGCAGACAT CCATCTTGATAATGGAACG CGTGAGCCA ]
[+] EMBL CF315662 [ tagaAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCGGCCCACGGCGAAGGAGACGGCTGTGGCAGCGAAGTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGTACCAACTTAACTAAAGAAGATTGCCGACGCAAAAGTGGATCTTTTGTTGCCTGTGATAAGGTCCATTTCCGCCGTATTATTGCTCCTCATACTGATACAAACCTAGGAGATTGTTCTTTTCTCGACACTTGCCGTCACACAAAGACCTGCAAGTATGTCCACTACGAGCTTGACCAAACACCAGATATACCTCCAATNGATGGCTGGTGCTCTTGCACCCCCAAGGCAAATAAGGCTCCAGAGAGCTGAATATTGTTCAGAAGTAGAGCTTGGAGAAGCTCAATGGATAAACTGTGACATCCGAAACTTCAGAATGGATATCTTANGACAGTTTGGAGTAATTATGGCCGATCCCCCTTGGGATATTCATATGGAATTGCCATATGGCACAATGGCTGATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACTGGGTCG ]
[+] EMBL CA756557 [ CTTGGAGAAGCTCAATGGATAAACTGTGACATCCGAAACTTCAGAATGGATATCTTAGGACAGTTTGGAGTAATTATGGCCGATCCCCCTTGGGATATTCATATGGAATTGCCATATGGCACAATGGCTGATGATGAAATGAGGACCCTTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACT GGTCGTGCAATGGAACTTGGTCGGGAGTGTTTGGAGCT ]
[-] EMBL CB664596 [ GAGGACCCCTAATGTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACT GGTCGTGCAATGGAACTTGGTCGGGAGTGTTTGGAGCTCTGGGGTTACAAACGTGTGGAGGAAATTATTTGGGTGAAGACCAATCAACTTCAACGTATTATTCGAACTGGACGCACTGGTCATTGGTTGAATCATAGTAAAGAGCATTGCCTTGTTGGAATAAAAGGAAACCCTTTAGTCAACAGGAACATTGACACTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGATGTACCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCATAATGCACATGCTGGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTG AGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAA TTGTTGGGTTTTGTAATGTTGGCAGACAT CCATCTTGATAATGGAACG CG ]
[-] EMBL CF315663 [ TTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTG AGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAA TTGTTGGGTTTTGTAATGTTGGCAGACAT CCATCTTGATAATGGAGCG CGTGAGCCATTACTGATTTAAAAAAAAAAAAAAAAA]
[+] EMBL BQ907053 [ GATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTGAAGGACTATGACATTGAGGAATCATCGTGCAAGAATAC AACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAATTTGTTGGGTTTTGTAATGTT GCAGACATCCCCATCTTGATAATGGAACGCCGTGAGCCATTACTGATCTAAAAA ]
consensusID : consensus_14000#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 783 fasta sequence
[CCTTTTTGCCCCCAAAGCGGGTCCCTTACCCCTCAGATGNGCTATTTTTTAAGCATCAGGTCGCCCCTTTTTGTTATTCGCCCGGTGGGGACCGTGGATTTTTCCCCACCCTTAAAAATGGGAACCCCCGGGTTTTCCCAATTTGGAGTTGGTAAAGTGTTTCCCAGTGGCGGCGGGTTATAACACTCCCCAAATGGGCGATTGTGTACCGGGCCCCCCCACGGGGNATTTGGTTCCTGNCCCCCCCTTAAAGGNTTTTNNNTNTNNTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTNNNCCTTTTTTTTTGTTTGCTCAGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTGAAGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAATTGTTGGGTTTTGTAATGTTGGCAGACATCCATCTTGATAATGGAACG]
[-] EMBL BE040287 [CCTTTTTGCCCCCAAAGCGGGTCCCTTACCCCTCAGATGNGCTATTTTTTAAGCATCAGGTCGCCCCTTTTTGTTATTCGCCCGGTGGGGACCGTGGATTTTTCCCCACCCTTAAAAATGGGAACCCCCGGGTTTTCCCAATTTGGAGTTGGTAAAGTGTTTCCCAGTGGCGGCGGGTTATAACACTCCCCAAATGGGCGATTGTGTACCGGGCCCCCCCACGGGGNATTTGGTTCCTGNCCCCCCCTTAAAGGNTTTTNNNTNTNNTTTTTTTTNTTTTTTTTTNTTTTTTTTTTTTTTTTTTNNNCCTTTTTTTTTGTTTGCTCAGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTGATGAAGGGTTGAGAGCACGGTACAAGGCTGCCTATCCTGATTCAGAGGTGCAGCCACCATCACCGCCCAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTACTGTATCAGACGGCGAGAGGCCTGCCTGATGTGAAGCAGTCGGCACCTTACTTTGAAGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGACATAAGTATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAGAAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGGAGGAGGGAAGAATTGTTGGGTTTTGTAATGTTGGCAGACATCCATCTTGATAATGGAACG]
consensusID : consensus_14000#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 692 fasta sequence
[TTTTATAATAGTAGAGATAAAACCCATATGGGCGTTATATTTAGCATGAAGTTTCATGTGTGTTTCAATCCACTTCACTCCTCTCCCCCACTAGGGCGGCCCAAATGTTCCGCCCGGCCCGGCCCGGCCCATTAAGGCGCAGCCGCACGGCTGGTGTGCCAAGCAAAGCAGGGGCATCGCCGCCGGTCATCTTCCTCCTCGCGCCGCCGCCGCAGCTGTCCTGCGATCTTCGCCCCGCGTGTCTCTCTCCCTCGCCGGCACAGTCCTCCTGGCTCCTCCTGTACGCCCCACGTATGGCCACCTGATGTAGTGCTGCACCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTTCTCCCGAATGACAGATTCTGCACAAGCGCCAACCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAACTTATCTGTACTAATTTTGAATGCATTTGTAGCACCTATTGTGAAGTTAAGCAGACAGGGTGCACTAGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAATTGATGGTTTAT]
[-] EMBL AK110780 [TTTTATAATAGTAGAGATAAAACCCATATGGGCGTTATATTTAGCATGAAGTTTCATGTGTGTTTCAATCCACTTCACTCCTCTCCCCCACTAGGGCGGCCCAAATGTTCCGCCCGGCCCGGCCCGGCCCATTAAGGCGCAGCCGCACGGCTGGTGTGCCAAGCAAAGCAGGGGCATCGCCGCCGGTCATCTTCCTCCTCGCGCCGCCGCCGCAGCTGTCCTGCGATCTTCGCCCCGCGTGTCTCTCTCCCTCGCCGGCACAGTCCTCCTGGCTCCTCCTGTACGCCCCACGTATGGCCACCTGATGTAGTGCTGCACCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTT ]
[+] EMBL AK120848 [ CGCCGCCGCCGCAGCTGTCCTGCGATCTTCGCCCCGCGTGTCTCTCTCCCTCGCCGGCACAGTCCTCCTGGCTCCTCCTGTACGCCCCACGTATGGCCACCTGATGTAGTGCTGCACCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTTCTCCCGAATGACAGATTCTGCACAAGCGCCAACCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAACTTATCTGTACTAATTTTGAATGCATTTGTAGCACCTATTGTGAAGTTAAGCAGACAGGGTGCACTAGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAATTGATGGTTTAT]
[+] EMBL CF338303 [ GCCGCCGCCGCAGCTGTCCTGCGATCTTCGCCCCGCGTGTCTCTCTCCCTCGCCGGCACAGTCCTCCTGGCTCCTCCTGTACGCCCCACGTATGGCCACCTGATGTAGTGCTGCACCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTTCTCCCGAATGACAGATTCTGCACAAGCGCCAACCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAACTTATCTGTACTAATTTTGAATGCATTTGTAGCACCTATTGTGAAGTTAAGCAGACAGGGTGCACTAGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAATTGATGGTTTAT]
[+] EMBL CF338343 [ GCCGCCGCCGCAGCTGTCCTGCGATCTTCGCCCCGCGTGTCTCTCTCCCTCGCCGGCACAGTCCTCCTGGCTCCTCCTGTACGCCCCACGTATGGCCACCTGATGTAGTGCTGCACCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTTCTCCCGAATGACAGATTCTGCACAAGCGCCAACCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAACTTATCTGTACTAATTNTGAATGCATTTGTAGCACCTATTGTGAAGTTAAGCAGACAGGGTGCACTAGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAATTGATGGTTTA ]
consensusID : consensus_14000#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 682 fasta sequence
[TTCGATNCCTCCGATATTCCCACGGCCAAGGGGCATGACGATGCAGGGGATGCAGAGGGTGCCCGGCGTGCCACCAGGGTTGATNCCGCTGCAGCGCCATTCATGGGACCAGCTGGAGTTATCACAATGGGTGGGGGTGTGGGGCCTAGCCCTAACCAGCAGAAGCAGAAGAGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTTCTCCCGAATGACAGATTCTGCACAAGCGCCAACCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAACTTATCTGTACTAATTTTGAATGCATTTGTAGCACCTATTGTGAAGTTAAGCAGACAGGGTGCACTAGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAATTGATGGTTTATTTGGAAATCTCATGACATTTCTAAACAAAAAAAAA]
[+] EMBL AU091598 [TTCGATNCCTCCGATATTCCCACGGCCAAGGGGCATGACGATGCAGGGGATGCAGAGGGTGCCCGGCGTGCCACCAGGGTTGATNCCGCTGCAGCGCCATTCATGGGACCAGCTGGAGTTATCACAATGGGTGGGGGTGTGGGGCCTAGCCCTAACCAGCAGAAGCAGAAGAGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCCTCCCCCATGACCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCT ]
[+] EMBL AU091599 [ AACCAGCAGAAGCAGAAGAGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGNCATATAGAGAGAAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCCTCCCCCATGNCCGGGGTGACCAGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATTCGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCGAGCAGATTCGGCACCTTCTTCCTTTCTCCCGAATGACAGATTCTGCACAAGCGCCAACCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAACTTATCTGTACTAATTTTGAATGCATTTGTAGCACCTATTGTGAAGTTAAGCAGACAGGGTGCACTAGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAATTGATGGTTTATTTGGAAATCTCATGACATTTCTAAACAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 TGGCCGCATTCGATGCCTCCGATATTCCCACGGCCAAGGGGCATGACGATGCAGGGGATG 60
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 CAGAGGGTGCCCGGCGTGCCACCAGGGTTGATGCCGCTGCAGCGGCCATTCATGGGACCA 120
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 GCTGGAGTTATCACAATGGGTGGGGGTGTGGGGCCTAGCCCTAACCAGCAGAAGCAGAAG 180
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 AGCGAGGAGGACGAACTTAAGGATCTTGAGTTGCTGCTGAACAAAAAGACATATAGAGAG 240
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 AAGCAGAACACCAAGACCGGGGAGGAACTTTTAGATCTCATTCACCGGCCCACGGCGAAG 300
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 GAGACGGCTGTGGCAGCGAAGTTTAAAACAAAAGGTGGTTCCCAGCTGAAGGAATATTGT 360
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 ACCAACTTAACTAAAGAAGATTGCCGACGCCAAAGTGGATCTTTTGTTGCCTGTGATAAG 420
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 GTCCATTTCCGCCGTATTATTGCTCCTCATACTGATACAAACCTAGGAGATTGTTCTTTT 480
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 CTCGACACTTGCCGTCACACAAAGACCTGCAAGTATGTCCACTACGAGCTTGACCAAACA 540
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 CCAGATATACCTCCAATGATGGCTGGTGCTCTTGCACCCCCAAGGCAAATAAGGCTCCAG 600
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 AGAGCTGAATATTGTTCAGAAGTAGAGCTTGGAGAAGCTCAATGGATAAACTGTGACATC 660
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 CGAAACTTCAGAATGGATATCTTAGGACAGTTTGGAGTAATTATGGCCGATCCCCCTTGG 720
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 GATATTCATATGGAATTGCCATATGGCACAATGGCTGATGATGAAATGAGGACCCTTAAT 780
consensus_14000#1 ------------------------------------------------------------
consensus_14000#2 ------------------------------------------------------------
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 GTCCCTGCTTTACAAACTGATGGATTAATTTTCTTATGGGTCACTGGTCGTGCAATGGAA 840
consensus_14000#1 ----------------------------CCTTTTTGCCC-CCAAAGCGGGTCCCTTACCC 31
consensus_14000#2 -----------------------------------------------TTTTATAATAGTA 13
consensus_14000#3 ------------------------------------------------------------
consensus_14000#0 CTTGGTCGGGAGTGTTTGGAGCTCTGGGGTTACAAACGTGTGGAGGAAATTATTTGGGTG 900
consensus_14000#1 CTCAGATGNGCTATTTTTTAAGCATCAGGTCGCCCCTTTTTGTT----ATTCGCCCGGTG 87
consensus_14000#2 GAGATAAAACCCATATGGGCGTTATATTTAGCATGAAGTTTCATGTGTGTT-TCAATCCA 72
consensus_14000#3 ---------------------TTCGATNCCTCCGATATTCCCACGG------CCAAGGGG 33
consensus_14000#0 AAGACCAA-TCAACTTCAACGTATTATTCGAACTGGACGCACTGGTCATTGGTTGAATCA 959
consensus_14000#1 GGGACCG--TGGATTTTTCCCCACCCTTAAAAATGGGAACCCCCGGGTTTTCCCAATTTG 145
* * * *
consensus_14000#2 CTTCACT----CCTCTCCCCCACTAGGGCGGCCCA-AATGTTCCGCCCGGCCCGGCCCGG 127
consensus_14000#3 CATGACG----ATGCAGGGGATGCAGAGGGTGCCC-GGCGTGCCACCAGGGTTGATNCCG 88
consensus_14000#0 TAGTAA--AGAGCATTGCCTTGTTGGAATAAAAGGAAACCCTTTAGTCAACAGGAACATT 1017
consensus_14000#1 GAGTTGGTAAAGTGTTTCCCAGTGGCGGCGGGTTATAACACTCC--CCAAATGGGCGATT 203
*
consensus_14000#2 CC-CATTAAGGCG--CAGCCGCACGGCTGGTGT--------GCCAAGCAAAGCAGGGGCA 176
consensus_14000#3 CTGCAGCGCCATT--CATGGGACCAGCTGGAGTT-------ATCACAATGGGTGGGGGTG 139
consensus_14000#0 G-ACACTGATGTTATTGTTGCTGAAGTCCGTGAAACAAGCAGAAAACCTGATGAGATGTA 1076
consensus_14000#1 GTGTACCGGGCCCCCCCACGGGGNATTTGGTTC------CTGNCCCCCCCTTAAAGGNTT 257
* *
consensus_14000#2 TCGCCGCCGGTCATCTTCCTCCTCGCGCCGCCG----CCGCAGCTGTCCTGCGATCTTCG 232
consensus_14000#3 TGGGGCCTAG----------CCCTAACCAGCAG----AAGCAGAAGAGCGAGGAGGACGA 185
consensus_14000#0 CCCCATGCTAGAAAGAATAAGCCCAAGGACAAGGAAGCTGGAACTGTTTGCAAGAATGCA 1136
consensus_14000#1 TTNNNTNTNNTTTTTTTTNTTTTTTTTTNTTT-----TTTTTTTTTTTTTTTNNNCCTTT 312
consensus_14000#2 CCCCGCGTGTCTC----TCTCCCTCGCCGGC---ACAGTCCTCCTGGCTCCTCCTGTACG 285
consensus_14000#3 ACTTAAGGATCTT----GAGTTGCTGCTGAACAAAAAGACATATAGAGAGAAGCAGAACA 241
consensus_14000#0 TAATGCACATGCT-GGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTG 1195
consensus_14000#1 TTTTTTGTTTGCTCAGATGGCTTTCTCTGGGTAACCAGTTAAATGGAGTAAGGCTTGTTG 372
* * * ** * *
consensus_14000#2 CCCC-ACGTATGGCCACCTGATGTAGTGCTGCACCACCCTCCCCCATGACCGGGGTGACC 344
consensus_14000#3 CCAAGACCGGGGAGGAACT--TTTAGATCTCATTCACCCTCCCCCATGACCGGGGTGACC 299
consensus_14000#0 ATGA-AGGGTTGAGAGCACGGTACAAGGCTGC-CTATCCTGATTCAGAGGTGCAGCCACC 1253
consensus_14000#1 ATGA-AGGGTTGAGAGCACGGTACAAGGCTGC-CTATCCTGATTCAGAGGTGCAGCCACC 430
* * * * ** * *** ** * * ***
consensus_14000#2 AGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATT 404
consensus_14000#3 AGCTTCTCTACAAACCGCGCGCAATCTGGCCTCTACATCAATCCTCTCGATGGGGGTATT 359
consensus_14000#0 ATCACCGCC-CAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTA 1312
consensus_14000#1 ATCACCGCC-CAGAGCAAGCGCCCCTATAGATGGTGATCAAGGCACATCACAGAAACCTA 489
* * * * ** * * **** * ***** * * * * *
consensus_14000#2 CGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCG 464
consensus_14000#3 CGAGGTGAAGTGGCAACGAGGCCCCAGCTCTTGGCCCTTTGCCGCTCGCTGCCGGATTCG 419
consensus_14000#0 CTGTATCAGACGGCGA-GAGGCCTG----CCTGATGTGAAGCAGTCGGCACCTTACTTTG 1367
consensus_14000#1 CTGTATCAGACGGCGA-GAGGCCTG----CCTGATGTGAAGCAGTCGGCACCTTACTTTG 544
* * * *** * ****** * ** ** * ** * ** *
consensus_14000#2 AGCAGATTCGGCACCTTCT--TCCTTTCTCCCGAATG-ACAGATTCTGCACAAGCGCCAA 521
consensus_14000#3 AGCAGATTCGGCACCTTCT--TCCTTTCTCCCGAATG-ACAGATTCTGCACAAGCGCCAA 476
consensus_14000#0 A-GGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGA-CATAAG 1425
consensus_14000#1 AAGGACTATGACATTGAGGAATCATCGTGCAAGAATACAAACACTTTGGACGA-CATAAG 603
* * * ** ** * * **** * * * * ** ** * * *
consensus_14000#2 CCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAAC---TTATCT-G 577
consensus_14000#3 CCTATCATTCGCCGACCGATGCTAGTCAGGTTAGCGGATTTATTGGAAC---TTATCT-G 532
consensus_14000#0 TATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAG 1485
consensus_14000#1 TATTTTATCACTCGTCAGCTTTAACTCCGGTTGTAAAATTAGTTAAGTCGGTTTACTTAG 663
* * ** ** * * * * ** **** *** ** * *** * *
consensus_14000#2 TACTAATTTTGAATGCATTTGTAGCA--CCTATTGTGAAGTTAAGCAGACAGGGTGCACT 635
consensus_14000#3 TACTAATTTTGAATGCATTTGTAGCA--CCTATTGTGAAGTTAAGCAGACAGGGTGCACT 590
consensus_14000#0 AAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGG 1545
consensus_14000#1 AAGTTACTCCAGTTGTAAAATTAGTAAGTCGATTGTTTTTGGTCGCTTGAGGAATGCAGG 723
* * * * ** * *** * * ***** ** * ****
consensus_14000#2 AGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAAT--TGATGGTTTAT- 692
consensus_14000#3 AGTGCGACAGTAGTTCCTGCCTGTTGCCACAATTCCACAGAACAAT--TGATGGTTTATT 648
consensus_14000#0 AG-GAGGGAAGAATTGTTGGGTTTTGTAATGTTGGCAGACATCCATCTTGATAATGGAAC 1604
consensus_14000#1 AG-GAGGGAAGAATTGTTGGGTTTTGTAATGTTGGCAGACATCCATCTTGATAATGGAAC 782
** * * * * ** ** * *** * * ** * * * ** **** * *
consensus_14000#2 -------------------------------------
consensus_14000#3 TGGAAATCTCATGACATTTCTAAACAAAAAAAAA--- 682
consensus_14000#0 GCGTGAGCCATTACTGATTTAAAAAAAAAAAAAAAAA 1641
consensus_14000#1 G------------------------------------ 783
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||