cluster # 14002

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Oryza sativa
cluster # 14002 cluster # 14002 Sequences # 14 consensus # 5

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14002#0 length = 969 sequences # 8
consensus_14002#1 length = 960 sequences # 3

consensus_14002#2 length = 593 sequences # 1
consensus_14002#3 length = 394 sequences # 1
consensus_14002#4 length = 282 sequences # 1

consensusID : consensus_14002#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 8
consensus length = 969
fasta sequence

                              [ATCAGTATGCAAATTAACCATATGGCAACTGCTTCGTTGAGCCTCCTCCTCTGCCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK067288             [ATCAGTATGCAAATTAACCATATGGCAACTGCTTCGTTGAGCCTCCTCCTCTGCCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGGGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACA                                                                                            ]
[+] EMBL AK066677             [           AATTAACCATATGGCAACTGCTTCGTTGAGCCTCCTCCTCTGCCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCTTCTCTCATCCTTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGAGTACAAATTTGCATGAACAGCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTGAATTTGGTTGCTAA                       ]
[+] EMBL AK104507             [               AACCATATGGCAACTGCTTCGTTGAGCCTCCTCCTCTGCCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTGAA                                   ]
[+] EMBL AU197783             [                                TTCGTTGAGCCTCCTCCTCTGCCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGAT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU076212             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      GGTTGTCATCTCTCATCCTTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU197784             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CTCTCATCCTTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTNTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTGAATTTGGTTGCTAATTTCTAAAAAAA           ]
[+] EMBL AU031221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  gGTNTCCCATTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGNGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCNCCTTAATGCTGGANTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGANTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU093773             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CCNGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGNTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATNCATGAAAGAACATGCGACTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCNATGTATGCAGGCTGAATANAATGAGTGTCTGCAATCTGAATTTGGTTGCTAAAAA                    ]




>consensus_14002#0
ATCAGTATGCAAATTAACCATATGGCAACTGCTTCGTTGAGCCTCCTCCTCTGCCTCGCC
GCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCG
CCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTAC
GAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTC
TACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATAT
TACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTTTACC
GAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCT
TTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAG
TTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTAC
GCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAG
AATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGA
AACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGA
TATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTG
GACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACATGAAAGAACATGCGA
CTGTTTATTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGAACAGCCATGTAT
GCAGGCTGAATACAATGAGTGTCTGCAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAA
AAAAAAAAA

consensusID : consensus_14002#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 960
fasta sequence

                              [AACCATATGGCAACTGCTTCGTTGAGCCTCCTGATCCTCTGCCTCGCCGCGCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGCTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGCCGGCGGCGGCGAGGCCGGCGTGGTAGCCCACTCCGACCGGGCCGTCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTAATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACATCTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGC-ATGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCAT-GGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACTACATGAAAGAACATGCAAATGTTTCTTCAGAATAAATTACCGGTGTCCATGTACAAATTTGCATAAACAGCCATGCATGCAGGCTGAATACAATGAGTGTCTGCAATCTGGTGGCTTGGACCCAGAATTTGGTTGCTAATTTCTTTATACCCACTCAATGCCTGTTGGGCTTTA]

[+] EMBL AK059758             [AACCATATGGCAACTGCTTCGTTGAGCCTCCTGATCCTCTGCCTCGCCGCGCTCGCCGCGGCGGCCGGCGCCGCCGCCGCGGCTGCTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGCCGGCGGCGGCGAGGCCGGCGTGGTAGCCCACTCCGACCGGGCCGTCGTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATATTAATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACATCTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAGGCTAAATCAATATTTGCTTTTCTAAGAAACGAAGGAAAATCAGTCGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGACGGTAGCAAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGCTGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGTCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCAT GGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTGTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACTACATGAAAGAACATGCAAATGTTTCTTCAGAATAAATTACCGGTGTCCATGTACAAATTTGCATAAACAGCCATGCATGCAGGCTGAATACAATGAGTGTCTGCAATCTGGTGGCTTGGACCCAGAATTTGGTTGCTAATTTCTTTATACCCACTCAATGCCTGTTGGGCTTTA]
[+] EMBL AU076211             [                                                                                                                                                                                                                                                                                                                               ACCGAATAGCTNGAGTCTCACTCTCCGGTGAAAG AGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGC ATGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAG TTCCCAT GGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATG AACTTAATAAA                                                                                                                                                                                  ]
[+] EMBL AU095296             [                                                                                                                                                                                                                                                                                                                                         TCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCCTTACGC ATGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCG AACCGGG AACAAGtc                                                                                                                                                                                                                                          ]




>consensus_14002#1
AACCATATGGCAACTGCTTCGTTGAGCCTCCTGATCCTCTGCCTCGCCGCGCTCGCCGCG
GCGGCCGGCGCCGCCGCCGCGGCTGCTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCG
GACATGAAGGCCGCCGGCGGCGGCGAGGCCGGCGTGGTAGCCCACTCCGACCGGGCCGTC
GTCCTCGCCTCCGACGTCTACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAA
GTTGGTGATGCCGGATATTAATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGC
AACCACATCTGTGAACTTTACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGA
AAAAGCTAAATCAATCTTTGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGG
AGGATATTGTTGGGGTGGAAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGC
GGTTGTCATCTCTCATCCTTACGCATGACTGCTGATGATATGAAAGAGGTTAAATGGCCC
ATCGAGATCCTTGGAGGCCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTAT
GTGCATGCCTTGCGTCAAAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTT
TCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAA
CAAGCTCTCGCCTTAATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATA
AATACTACATGAAAGAACATGCAAATGTTTCTTCAGAATAAATTACCGGTGTCCATGTAC
AAATTTGCATAAACAGCCATGCATGCAGGCTGAATACAATGAGTGTCTGCAATCTGGTGG
CTTGGACCCAGAATTTGGTTGCTAATTTCTTTATACCCACTCAATGCCTGTTGGGCTTTA

consensusID : consensus_14002#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 593
fasta sequence

                              [AGGTTAAATCCCCGGGTTGATGACTCATCGTGAATAAATAAGGGATTTTTTTAATAAATCAGCCCATGCGGCAAATTTTTTTGAATAGGGAAAGAAAAAAAACCTTATGTGTGTTTTAATAAAGGATTGAAAGTTTTGAATAACTGAAACTGAAATATTTGGCAAGTTAACAAGTCCATCAATGTTCAAGGCACTTGTAAATCAATTAAAAAAACCTGGGGCTTTGACCCAATTTATTTTTTTAGCATATAATACAGAGTAACCCCCTGATATTTTTGTTGTTGCAGATTGATTTTTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTTTTGAAACCGGGAAACAAGCTTTCGCCTTAATGGTGGATTGGTTTCAGAAACCCTTGAAGTGATGAAACTTAATAAATTCATGAAAGAACATGGGACTGTTTGTTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGATCACGCCATGTATGCAGGGTGAATACAATGAGTGTCAGGAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAGGAA]

[-] EMBL CB632098             [AGGTTAAATCCCCGGGTTGATGACTCATCGTGAATAAATAAGGGATTTTTTTAATAAATCAGCCCATGCGGCAAATTTTTTTGAATAGGGAAAGAAAAAAAACCTTATGTGTGTTTTAATAAAGGATTGAAAGTTTTGAATAACTGAAACTGAAATATTTGGCAAGTTAACAAGTCCATCAATGTTCAAGGCACTTGTAAATCAATTAAAAAAACCTGGGGCTTTGACCCAATTTATTTTTTTAGCATATAATACAGAGTAACCCCCTGATATTTTTGTTGTTGCAGATTGATTTTTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGTTTGCTTTTGAAACCGGGAAACAAGCTTTCGCCTTAATGGTGGATTGGTTTCAGAAACCCTTGAAGTGATGAAACTTAATAAATTCATGAAAGAACATGGGACTGTTTGTTCAGAATAAATTACCGGTGTCCGTGTACAAATTTGCATGATCACGCCATGTATGCAGGGTGAATACAATGAGTGTCAGGAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAGGAA]




>consensus_14002#2
AGGTTAAATCCCCGGGTTGATGACTCATCGTGAATAAATAAGGGATTTTTTTAATAAATC
AGCCCATGCGGCAAATTTTTTTGAATAGGGAAAGAAAAAAAACCTTATGTGTGTTTTAAT
AAAGGATTGAAAGTTTTGAATAACTGAAACTGAAATATTTGGCAAGTTAACAAGTCCATC
AATGTTCAAGGCACTTGTAAATCAATTAAAAAAACCTGGGGCTTTGACCCAATTTATTTT
TTTAGCATATAATACAGAGTAACCCCCTGATATTTTTGTTGTTGCAGATTGATTTTTACG
CCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGGTCGATATAACACCAGCGACCCGT
TTGCTTTTGAAACCGGGAAACAAGCTTTCGCCTTAATGGTGGATTGGTTTCAGAAACCCT
TGAAGTGATGAAACTTAATAAATTCATGAAAGAACATGGGACTGTTTGTTCAGAATAAAT
TACCGGTGTCCGTGTACAAATTTGCATGATCACGCCATGTATGCAGGGTGAATACAATGA
GTGTCAGGAATCTGAATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAGGAA

consensusID : consensus_14002#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 394
fasta sequence

                              [CCGCCTTTGATGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTAGTACGCATATGATTGCCTGAGCTAGCTAGCTAACTGATCAGTGATCACTACTGCCATTTGTTCATTCCTTGGTGATTATGGACTGATGATGAACTGCTAATTTCATTGCTTGCTGCTGCATGCGTGATTGTTAATTTGGTTTAACTCCTCAGGTTTCCAAGCGCCGTTACTGAGGTAAATTTTCTTTGTCATCCTCCTCTTTTCTAGTTTTCTTTTCTAGCA]

[+] EMBL CB632097             [CCGCCTTTGATGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTAGTACGCATATGATTGCCTGAGCTAGCTAGCTAACTGATCAGTGATCACTACTGCCATTTGTTCATTCCTTGGTGATTATGGACTGATGATGAACTGCTAATTTCATTGCTTGCTGCTGCATGCGTGATTGTTAATTTGGTTTAACTCCTCAGGTTTCCAAGCGCCGTTACTGAGGTAAATTTTCTTTGTCATCCTCCTCTTTTCTAGTTTTCTTTTCTAGCA]




>consensus_14002#3
CCGCCTTTGATGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCG
GCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACGTCACCG
GCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGGTTAGTACGCAT
ATGATTGCCTGAGCTAGCTAGCTAACTGATCAGTGATCACTACTGCCATTTGTTCATTCC
TTGGTGATTATGGACTGATGATGAACTGCTAATTTCATTGCTTGCTGCTGCATGCGTGAT
TGTTAATTTGGTTTAACTCCTCAGGTTTCCAAGCGCCGTTACTGAGGTAAATTTTCTTTG
TCATCCTCCTCTTTTCTAGTTTTCTTTTCTAGCA

consensusID : consensus_14002#4
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [ATTGCAGCGTTCATCTNACTCTACCGGTTAAATCCATGTNACAAAAGCCCAAGCATCGTCTCTAACCCATCANTATGCAAATNAACCATATGGCAACTNCTTCGTTNAGCCTCCTCCTCTGCNTCGCNGCGGCGGCCGGCGCCGCCCNGCGCTTNATTCCGCCGCGCTTGCAGTGCTTTAAGCACCCGCNGGACATGAAGGCCGGCGGCGGCGAGGCCGGCTTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACNTAACCGNCGTCGCCCACTCCGGCC]

[+] EMBL C93609               [ATTGCAGCGTTCATCTNACTCTACCGGTTAAATCCATGTNACAAAAGCCCAAGCATCGTCTCTAACCCATCANTATGCAAATNAACCATATGGCAACTNCTTCGTTNAGCCTCCTCCTCTGCNTCGCNGCGGCGGCCGGCGCCGCCCNGCGCTTNATTCCGCCGCGCTTGCAGTGCTTTAAGCACCCGCNGGACATGAAGGCCGGCGGCGGCGAGGCCGGCTTGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACNTAACCGNCGTCGCCCACTCCGGCC]




>consensus_14002#4
ATTGCAGCGTTCATCTNACTCTACCGGTTAAATCCATGTNACAAAAGCCCAAGCATCGTC
TCTAACCCATCANTATGCAAATNAACCATATGGCAACTNCTTCGTTNAGCCTCCTCCTCT
GCNTCGCNGCGGCGGCCGGCGCCGCCCNGCGCTTNATTCCGCCGCGCTTGCAGTGCTTTA
AGCACCCGCNGGACATGAAGGCCGGCGGCGGCGAGGCCGGCTTGGTCGTCCACGACCTGG
CGGGCTACGAGGCCTACNTAACCGNCGTCGCCCACTCCGGCC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14002#1      ------------------------------------------AACCATATGGCAACTGCT 18
consensus_14002#2      ------------------------------------------------------------
consensus_14002#0      ATCAGTATGCAAATTAACCATATGGCAACTGCTTCGTTGAGCCTCCTCCTCTGCCTCGCC 60
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      TCGTTGAGCCTCCTGATCCTCTGCCTCGCCGCGCTCGCCGCGGCGGCCGGCGCCGCCGCC 78
consensus_14002#2      ------------------------------------------------------------
consensus_14002#0      GCGGCGGCCGGCGCCGCCGCCGCGGCTGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCG 120
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      GCGGCTGCTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATGAAGGCCGCCGGC 138
consensus_14002#2      ------------------------------------------------------------
consensus_14002#0      CCGGACATGAAGGCCGGCGGCGGCGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTAC 180
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      GGCGGCGAGGCCGGCGTGGTAGCCCACTCCGACCGGGCCGTCGTCCTCGCCTCCGACGTC 198
consensus_14002#2      ------------------------------------------------------------
consensus_14002#0      GAGGCCTACGTCACCGGCGCCGCCCACTCCGGCCGGGCCATCGTCCTCGCCTCCGACGTC 240
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      TACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATAT 258
consensus_14002#2      ------------------------------------------------------------
consensus_14002#0      TACGGTTTCCAAGCGCCGTTACTGAGGCAAATAGCTGATAAAGTTGGTGATGCCGGATAT 300
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      TAATTACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACATCTGTGAACTT 318
consensus_14002#2      ---------------------------------AGGTTAAATCCCCGGGTTGATGACTCA 27
consensus_14002#0      ----TACGTCGTGGTACCTGATTTGTTTCATGGAGATCCAGCAACCACAACTGTGAACTT 356
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      TACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTT 378
consensus_14002#2      TCGTGAATAAATAAGG---GATTTTTTTAATAAATCAGCCCATGCGGCAAA-------TT 77
consensus_14002#0      TACCGAATGGCTCGAGTCTCACTCTCCGGTGAAAGAAGCTGAAAAAGCTAAATCAATCTT 416
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      TGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGG 438
consensus_14002#2      TTTTTGAATAGGGAAAGAAAAAAAACCTTATGTGTGTTTTAATAAA--------GGATTG 129
consensus_14002#0      TGCTTTTCTAAGAAACGAAGGGAAATCACTTGTTGGAGTTGGAGGATATTGTTGGGGTGG 476
consensus_14002#3      ------------------------------------------------------------
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      AAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCC 498
consensus_14002#2      AAAGTTT----TGAA--TAACTGAAACTGA-AATATTTGGCAAGTTAACAAGTC-CATCA 181
consensus_14002#0      AAAGTTTGCTGTGGAGGTAGCGAAAACCAATGAGGTAGAAGCGGTTGTCATCTCTCATCC 536
consensus_14002#3      ---------------------------------------------------CCGCCTTTG 9
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      TTACGCAT-GACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGG 557
consensus_14002#2      ATGTTCAA-GGCACTTG------TAAATCAATTAAAAAAACCTG----GGGCTTTGACCC 230
consensus_14002#0      TTACGCAGTGACTGCTGATGATATGAAAGAGGTTAAATGGCCCATCGAGATCCTTGGAGG 596
consensus_14002#3      ATGTTCCGCCGCGCTTGCAGTGCTTTGAGCACCCGCCGGACATG--AAGGCCGGCGGCGG 67
consensus_14002#4      ------------------------------------------------------------
                                                                                   

consensus_14002#1      CCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCA 617
consensus_14002#2      AATTTATTTTTTTAGCATATAATACAGAGTAACCCCCTGATATTTTTGT------TGTTG 284
consensus_14002#0      CCAGAATGACACAGTTACACCACCAAGATTAGTCTACCAGTATGTGCATGCCTTGCGTCA 656
consensus_14002#3      CGAGGCCGGCGTGGTCGTCCACGACCTGGCGGGCTAC-GAGGCCTACGT------CACCG 120
consensus_14002#4      ----ATTGCAGCGTTCATCTN--ACTCTACCGGTTA----AATCCATGT------NACAA 44
                                                                       *           

consensus_14002#1      AAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGG 677
consensus_14002#2      CAGA-------TTGATTTTTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGG 337
consensus_14002#0      AAGAAACGATATTGATTTCTACGCCAAGATTTTTCCAGGAGTTTCCCATGGATTTGCCGG 716
consensus_14002#3      GCGCC-GCCCACTC-CGGCCGGGCCATCGTCCTCGCCTCCGACGTCTACGG--TTAGTAC 176
consensus_14002#4      AAGCCCAAGCATCG-TCTCTAACCCATCANTAT-GCAAATNAACCATATGG--CAACTNC 100
                         *                    ***      *  *           * **         

consensus_14002#1      TCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCC---TT 734
consensus_14002#2      TCGATATAACACCAGCGACCCGTTTGCTTTTGAAACCGGGAAACAAGCTTTCGCC---TT 394
consensus_14002#0      TCGATATAACACCAGCGACCCGTTTGCTCTCGAAACCGGGAAACAAGCTCTCGCC---TT 773
consensus_14002#3      G-CATATGATTGCCTGAGCTAGCTAGCTAACTGATCAGTGATCACTACTGCCATTTG-TT 234
consensus_14002#4      TTCGTTNAGCCTCCTCCTCTGCNTCGCNG------CGGCGGCCGGCGCCGCCCNGCGCTT 154
                           *       *     *    * **        * * *       *   *      **

consensus_14002#1      AATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATACTACATGAAA 794
consensus_14002#2      AATGGTGGATTGGTTTCAGAAACCCTTGAAGTGATGAAACTTAATAAATT---CATGAAA 451
consensus_14002#0      AATGCTGGACTGGTTTCAGAAACACTTGAAGTGATGAAACTTAATAAATA---CATGAAA 830
consensus_14002#3      CATTCCTTGGTGATTATGGACTGATGATGAACTGCTA-ATTTCATTGCTT----GCTGCT 289
consensus_14002#4      NATTCCGCCGCGCTTGCAGTGCTTTAAGCACCCGCNGGACATGAAGGCCG----GCGGCG 210
                        **        * **   *          *        *  * *                

consensus_14002#1      GAACATGCAAATGTTTCTTCAGAATAAATTACC-GGTGTCCATGTACAAATTTGCATAAA 853
consensus_14002#2      GAACATGGGACTGTTTGTTCAGAATAAATTACC-GGTGTCCGTGTACAAATTTGCATGAT 510
consensus_14002#0      GAACATGCGACTGTTTATTCAGAATAAATTACC-GGTGTCCGTGTACAAATTTGCATGAA 889
consensus_14002#3      GCATGCGTGATTGTTAATTTGGTTTAACTCCTCAGGTTTCCAAGCGC-CGTTACTGAGGT 348
consensus_14002#4      GCGAGGCCGGCT--TGGTCGTCCACGACCTGGCGGGCTACGAGGCCTACNTAACCGNCGT 268
                       *          *  *  *        *     * **   *   *      *         

consensus_14002#1      CA-GCCATGCATGCAGGCTGAATACAATGAGTGTCTGCAATCTGGTGGCTTGGACCCAGA 912
consensus_14002#2      CACGCCATGTATGCAGGGTGAATACAATGAGTGTCAGGAATCTG---------------A 555
consensus_14002#0      CA-GCCATGTATGCAGGCTGAATACAATGAGTGTCTGCAATCTG---------------A 933
consensus_14002#3      AA-ATTTTCTTTGTCATCCTCCTCTTTTCTAGTTTTCTTTTCTAGCA------------- 394
consensus_14002#4      CG-CCCACTCCGGCC--------------------------------------------- 282
                                   *                                               

consensus_14002#1      ATTTGGTTGCTAATTTCTTTATACCCACTCAATGCCTGTTGGGCTTTA 960
consensus_14002#2      ATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAGGAA---------- 593
consensus_14002#0      ATTTGGTTGCTAAAAAAAAAAAAAAAAAAAAAAAAA------------ 969
consensus_14002#3      ------------------------------------------------
consensus_14002#4      ------------------------------------------------