cluster # 14004

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Oryza sativa
cluster # 14004 cluster # 14004 Sequences # 14 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_14004#0 length = 1837 sequences # 9

consensus_14004#1 length = 531 sequences # 1
consensus_14004#2 length = 474 sequences # 4

consensusID : consensus_14004#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 9
consensus length = 1837
fasta sequence

                              [CGTTCCCTAGCCAAGCGCTCCAGGTCGTAAATTCCACCCAAATTCGTTGCCTCCCCCACTACCCAACCCAAATCCGTAGAGGAACATAGCAGAAGTGAAGCCAAGAAACCAGTAAAAAAGCAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCGGCCACCGCTGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGCGGCGGCCACCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGCGCCGCCGCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGCGGCGGCGAGCCCTTACCCGCCGCAGTACCCGAATCCCAACCTGCCGCAGTACTACCCGCAGTAC-GGGAAC-TTCTACCCGCCGCCGCCGCCATCGATGCCAGGGCCGCTCCCGGCGCCGTACGACCACCACCACCGTGGGGGTGGGCCAGCACAGCCGCCGCCACCACCGCCGCCACCCCAGCCGATCCATGCCGCAGGGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTACCATGGCTGGGGTGGAAACTTCTCGTATGGTCCACCTACCCAGCCGCCGGCGCCGGCGCCGCCGTATGTTGAGCACCAGAAGGCTGTCACCATCCGTAACGATGTGAATCTCAAGAAGGAGACTCTCCGGGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTTGATGCCACCGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGTAACCTTACAGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGTCTTGGTCAAAAATTTAGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGATGCTGAATTATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACAACATTCTCAATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCACAGATCACCCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTTAAGCAGATCCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGAAACTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTATCGGAGCCAAGGGATACAACTGTCCTCCCATGTAGACATATGTGTATGTGCAGCGAGTGCGCAAAGGTTCTGAGGTACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCAGCAGATACCACAACTGCCACCACCTCCTTCAACCGCGCCTCCGCACC-ACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATAACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGTACTACAATCATGTAAGGGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCT]

[+] EMBL AK120883             [CGTTCCCTAGCCAAGCGCTCCAGGTCGTAAATTCCACCCAAATTCGTTGCCTCCCCCACTACCCAACCCAAATCCGTAGAGGAACATAGCAGAAGTGAAGCCAAGAAACCAGTAAAAAAGCAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCGGCCACCGCTGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGCGGCGGCCACCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGCGCCGCCGCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGCGGCGGCGAGCCCTTACCCGCCGCAGTACCCGAATCCCAACCTGCCGCAGTACTACCCGCAGTAC GGGAAC TTCTACCCGCCGCCGCCGCCATCGATGCCAGGGCCGCTCCCGGCGCCGTACGACCACCACCACCGTGGGGGTGGGCCAGCACAGCCGCCGCCACCACCGCCGCCACCCCAGCCGATCCATGCCGCAGGGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTACCATGGCTGGGGTGGAAACTTCTCGTATGGTCCACCTACCCAGCCGCCGGCGCCGGCGCCGCCGTATGTTGAGCACCAGAAGGCTGTCACCATCCGTAACGATGTGAATCTCAAGAAGGAGACTCTCCGGGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTTGATGCCACCGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGTAACCTTACAGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGTCTTGGTCAAAAATTTGGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGATGCTGAATTATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACAACATTCTCAATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCACAGATCACCCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTTAAGCAGATCCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGAAACTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTATCGGAGCCAAGGGATACAACTGTCCTCCCATGTAGACATATGTGTATGTGCAGCGAGTGCGCAAAGGTTCTGAGGTACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAG                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL AU093520             [CGTTCCCTAGCCAAGCGCTCCAGGTCGTAAATTCCACCCAAATTCGTTGCCTCCCCCACNACCCAACCCAAATCCGTAGAGGAACATAGCAGAAGTGAAGCCAAGAAACCAGTAAAAAAGCAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCGGCCACCGCTGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGCGGCGGCCACCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGCGCCGCCGCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGCGGCNGCGAGCCCTTACCCGCCGCAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL OSS14548A            [                                                                                                      AAGAAACCAGTAAAAAAGCAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCGGCCACCGCTGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGCGGNGGCCACCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGNGCCGCCGCCGCCGNCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGTGGTGGNGAGCCCTTACCCGCCGCAGTACCCGANTCCCAACCTGCCGCAGTACTACCCGCAGTACGGGGAACTTTTTACCCGCCG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU093480             [                                                                                                                                                                                                                                               ACCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGCGCCGCCGCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGCGGCGGCGAGCCCTTACCCGCCGCAGTACCCGAATCCCAACCTGCCGCAGTACTACCCGCAGTAC GGGAAC TTCTACCCGCCGCCGCCGCCATCGATGCCAGGGCCGCTCCCGGCGCCGTACGACCACCACCACCGTGGGGGTGGGCCAGCACAGCCGCCGNCACCACCGGCGCCACCCCAGCCGATCCATGCCGCA GGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTACCATGGCTTGGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB656564             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          CGATCCATGCCGCAGGGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTACCATGGCTGGGGTGGAAACTTCTCGTATGGTCCACCTACCCAGCCGCCGGCGCCGGCGCCGCCGTATGTTGAGCACCAGAAGGCTGTCACCATCCGTAACGATGTGAATCTCAAGAAGGAGACTCTCCGGGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTTGATGCCACCGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGTAACCTTACAGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGTCTTGGTCAAAAATTTAGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGATGCTGAATTATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACAACATTCTCAATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCACAGATCACCCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTTAAGCAGATCCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGAAACTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTATCGGAGCCAAGGGATACAACTGTCCTCCCATGTAGACATATGTGTATGTGCAGCGAGTGCGCAAAGGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CA999279             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                GTAACGATGTGAATCTCAAGAAGGAGACTCTCCGGGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTTGATGCCACCGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGTAACCTTACAGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGTCTTGGTCAAAAATTTAGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGATGCTGAATTATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACAACATTCTCAATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCACAGATCACCCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTTAAGCAGATCCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGAAACTCTGTTGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL BI805249             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TGTAGACATATGTGTATGTGCAGCGAGTGCGCAAAGGTTCTGAGGTACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCAGCAGATACCACAACTGCCACCACCTCCTTCAACCGCGCCTCCGCACC ACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATAACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTTTTTAGTATATGTGAGCACCAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGTACTACAATCATGTAAGGGAGGATGAGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAAaaaaaaa                                                                                 ]
[-] EMBL BI306221             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 TACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCAGCAGATACCACAACTGCCACCACCTCCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATAACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGTACTACAATCATGTAAGGGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAGTTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGT       ]
[+] EMBL CA765310             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGGAGAAGACATGTGCGTGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGTACTGCAATCATGTAAGGGACGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCT]




>consensus_14004#0
CGTTCCCTAGCCAAGCGCTCCAGGTCGTAAATTCCACCCAAATTCGTTGCCTCCCCCACT
ACCCAACCCAAATCCGTAGAGGAACATAGCAGAAGTGAAGCCAAGAAACCAGTAAAAAAG
CAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCGGCCACCGC
TGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGCGGCGGCCA
CCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGCGCCGCC
GCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGCGGCGGC
GAGCCCTTACCCGCCGCAGTACCCGAATCCCAACCTGCCGCAGTACTACCCGCAGTACGG
GAACTTCTACCCGCCGCCGCCGCCATCGATGCCAGGGCCGCTCCCGGCGCCGTACGACCA
CCACCACCGTGGGGGTGGGCCAGCACAGCCGCCGCCACCACCGCCGCCACCCCAGCCGAT
CCATGCCGCAGGGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTACCATGGCTG
GGGTGGAAACTTCTCGTATGGTCCACCTACCCAGCCGCCGGCGCCGGCGCCGCCGTATGT
TGAGCACCAGAAGGCTGTCACCATCCGTAACGATGTGAATCTCAAGAAGGAGACTCTCCG
GGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTTGATGCCAC
CGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGTAACCTTAC
AGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGTCTTGGTCA
AAAATTTAGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGATGCTGAATT
ATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACAACATTCTC
AATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCACAGATCAC
CCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTTAAGCAGAT
CCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGAAACTCTGT
TGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTATCGGAGCC
AAGGGATACAACTGTCCTCCCATGTAGACATATGTGTATGTGCAGCGAGTGCGCAAAGGT
TCTGAGGTACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGTTTGCTCGA
GATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCAGCAGATACCACAACTGCCACC
ACCTCCTTCAACCGCGCCTCCGCACCACAGCAAGAGTCGCAAGCGTGATCGCATTTGAAC
TTCATACATATAACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGC
TCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTTTTTAGTATATGTGAGC
ACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGTA
CTACAATCATGTAAGGGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTT
GTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTG
CGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCT

consensusID : consensus_14004#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 531
fasta sequence

                              [AAAGGGATCAACTGTCCTCCATGTAGACGTATGTGTATGTGCAGCGAGTGCGCANAGGTTCTGAGGTACCTGACAAACCGATGTCCCATGTGCAGGNAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACANCAAAGGTGAAGAGCAACAGCAGCAGCAGATACCANAACTGCCACCACCTCTCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTNATACATATAACATACACTACTTGATGTNTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGNATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTNNNNANNATATGTGAGCACAAAAGCTTGCTGAGCGCGNNGNNTTGCAAACTTGCACTTCANNGCTGNGTGCGCTGTACTACAATTATGTAAGGNACGANGGGNTAGNTAANNCCCTGCATCCATNANNACAAGGNTTNTACCTANNACCCAAANCTNTAGTNCCCCNCCCCNTTNCCNNCCCATTTC]

[+] EMBL CB096539             [AAAGGGATCAACTGTCCTCCATGTAGACGTATGTGTATGTGCAGCGAGTGCGCANAGGTTCTGAGGTACCTGACAAACCGATGTCCCATGTGCAGGNAACCTGTGGAGCGTTTGCTCGAGATCAAAGTCAACANCAAAGGTGAAGAGCAACAGCAGCAGCAGATACCANAACTGCCACCACCTCTCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTNATACATATAACATACACTACTTGATGTNTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGNATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTNNNNANNATATGTGAGCACAAAAGCTTGCTGAGCGCGNNGNNTTGCAAACTTGCACTTCANNGCTGNGTGCGCTGTACTACAATTATGTAAGGNACGANGGGNTAGNTAANNCCCTGCATCCATNANNACAAGGNTTNTACCTANNACCCAAANCTNTAGTNCCCCNCCCCNTTNCCNNCCCATTTC]




>consensus_14004#1
AAAGGGATCAACTGTCCTCCATGTAGACGTATGTGTATGTGCAGCGAGTGCGCANAGGTT
CTGAGGTACCTGACAAACCGATGTCCCATGTGCAGGNAACCTGTGGAGCGTTTGCTCGAG
ATCAAAGTCAACANCAAAGGTGAAGAGCAACAGCAGCAGCAGATACCANAACTGCCACCA
CCTCTCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAA
CTTNATACATATAACATACACTACTTGATGTNTGGTTTGCTGCCTCCATATATACAGGAG
CTCCCCTTGNATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTNNNNANNATATGTGAG
CACAAAAGCTTGCTGAGCGCGNNGNNTTGCAAACTTGCACTTCANNGCTGNGTGCGCTGT
ACTACAATTATGTAAGGNACGANGGGNTAGNTAANNCCCTGCATCCATNANNACAAGGNT
TNTACCTANNACCCAAANCTNTAGTNCCCCNCCCCNTTNCCNNCCCATTTC

consensusID : consensus_14004#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 474
fasta sequence

                              [CCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATTACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCTATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAATTACTCCCATCAAACAAGAGCTAAATGGATATTATTTCCCCGTCAAAAAAAAAAA]

[-] EMBL CA882845             [CCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATTACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACCTCAGTGCTGGGTGTGCTGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAAC                                                                                                                                                                                                                         ]
[+] EMBL AU093479             [        CCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATTACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTTTTTAGTATATGTGAGCACAAAAGCTT NTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCTATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAATTACTCCCATCAAACAAGAGCTAAATGGATATTATTTCCCCGTCAAAAAAAA   ]
[+] EMBL AU174141             [                    GTCGCAAGCGTGATCGCATTTGAACTTCATACATATTACATACNCTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCTATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAATTACTCCCATCAAACAAGAGCTAAATGGATATTATTTCCCCGTCAAAAAAAAAAA]
[+] EMBL AU093521             [                                                                                                             nTTGAATAAGTGGAAAACAGGGAGANGACATGTGCGTTTTTAGTATATGNGAGCACAAAAGCCTTNTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGAGGATGGGTTAGTTAATACCCTGCATCCATGAANACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACNGCGACAGAAATTCTCACGNTTTGTATTACTGCGGNTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCTATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAATTACTCCCATCAAACAAGAGCTAAATGGATATTATTTCCCCGTCAAAAAAA    ]




>consensus_14004#2
CCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGAACTTCATACATATTACA
TACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGAGCTCCCCTTGAATAAGT
GGAAAACAGGGAGAAGACATGTGCGTTTTTAGTATATGTGAGCACAAAAGCTTGCTGCGC
GCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTGAGGATGGGTTAGTTAATAC
CCTGCATCCATGAAAACAAGGTTTGTACATAAATTCTCTCTACTTGTACTACTGCGACAG
AAATTCTCACGATTTGTATTACTGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGC
TATAGTTCTGTCGTTAACTTGCCCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAAT
TACTCCCATCAAACAAGAGCTAAATGGATATTATTTCCCCGTCAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14004#0      CGTTCCCTAGCCAAGCGCTCCAGGTCGTAAATTCCACCCAAATTCGTTGCCTCCCCCACT 60
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      ACCCAACCCAAATCCGTAGAGGAACATAGCAGAAGTGAAGCCAAGAAACCAGTAAAAAAG 120
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CAAAGCTTCCTTGCTTCGATCGATTTATGATCAATTTTTGAAGATACTTCCGGCCACCGC 180
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      TGGTCGATTCCGGCGACCCCGTTTCCAGGAGATGGGGAACATGGGCAGCAGCGGCGGCCA 240
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CCGTCGCCGGAACAACGGCCACGGCCGGCATCACCACCATGGTCAGCCCACCGCGCCGCC 300
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      GCCGCCGCCGCAGCAGCAGCAACAGGAGGTGGCGCCGAACCGCTACGTGTTCGCGGCGGC 360
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      GAGCCCTTACCCGCCGCAGTACCCGAATCCCAACCTGCCGCAGTACTACCCGCAGTACGG 420
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      GAACTTCTACCCGCCGCCGCCGCCATCGATGCCAGGGCCGCTCCCGGCGCCGTACGACCA 480
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CCACCACCGTGGGGGTGGGCCAGCACAGCCGCCGCCACCACCGCCGCCACCCCAGCCGAT 540
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CCATGCCGCAGGGGAGTTCCCGCCTGCTATGCTGCAACAGCATCCCCACTACCATGGCTG 600
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      GGGTGGAAACTTCTCGTATGGTCCACCTACCCAGCCGCCGGCGCCGGCGCCGCCGTATGT 660
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      TGAGCACCAGAAGGCTGTCACCATCCGTAACGATGTGAATCTCAAGAAGGAGACTCTCCG 720
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      GGTTGAGCCTGATGACGAGTGCCCTGGACGATTCCTCATCACCTTCACCTTTGATGCCAC 780
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CGTCGCTGGAAGCATGACTGTTTACTTCTTTGCAAAGGAGGAGCTGAACTGTAACCTTAC 840
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      AGCAACGAAAGAAGATTTACTCAAGCCAGTCACTGTAACATTTAAAGAGGGTCTTGGTCA 900
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      AAAATTTAGGCAACCTTCAGGGACAGGAATTGACTTCTCGTTGTTTGAAGATGCTGAATT 960
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      ATTTAAGGAGGGAGAGATGGATGTATATCCACTTGCAGTGAAGGCTGAAACAACATTCTC 1020
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      AATTGGTCAATTCTCAGAAGGGGAAGAACAAAAGTCACAAACTCCAAATTCACAGATCAC 1080
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CCAGGCTGTATTTGAGAGGAAGGAGAATGGGGATTACCATGTTCGTGTTGTTAAGCAGAT 1140
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      CCTTTGGGTCAATGGCACGAGATATGAGTTGCAGGAGATTTATGGAATTGGAAACTCTGT 1200
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      TGAAGGTGACACCGAAGGGAATGATCCTGGCAAAGAGTGTGTTATCTGCCTATCGGAGCC 1260
consensus_14004#1      -----------------------------------------------------------A 1
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      AAGGGATACAACTGTCCTCCCATGTAGACATATGTGTATGTGCAGCGAGTGCGCAAAGGT 1320
consensus_14004#1      AAGGGAT-CAACTGTCCTCC-ATGTAGACGTATGTGTATGTGCAGCGAGTGCGCANAGGT 59
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      TCTGAGGTACCAGACCAACCGATGTCCCATCTGCAGGCAACCTGTGGAGCGTTTGCTCGA 1380
consensus_14004#1      TCTGAGGTACCTGACAAACCGATGTCCCATGTGCAGGNAACCTGTGGAGCGTTTGCTCGA 119
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      GATCAAAGTCAACAACAAAGGTGAAGAGCAACAGCAGCAGCAGATACCACAACTGCCACC 1440
consensus_14004#1      GATCAAAGTCAACANCAAAGGTGAAGAGCAACAGCAGCAGCAGATACCANAACTGCCACC 179
consensus_14004#2      ------------------------------------------------------------
                                                                                   

consensus_14004#0      ACCTC-CTTCAACCGCGCCTCCGCACCA-CAGCAAGAGTCGCAAGCGTGATCGCATTTGA 1498
consensus_14004#1      ACCTCTCTTCAACCGCGCCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGA 239
consensus_14004#2      -----------------CCTCCGCACCAACAGCAAGAGTCGCAAGCGTGATCGCATTTGA 43
                                        *********** *******************************

consensus_14004#0      ACTTCATACATATAACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGA 1558
consensus_14004#1      ACTTNATACATATAACATACACTACTTGATGTNTGGTTTGCTGCCTCCATATATACAGGA 299
consensus_14004#2      ACTTCATACATATTACATACACTACTTGATGTCTGGTTTGCTGCCTCCATATATACAGGA 103
                       **** ******** ****************** ***************************

consensus_14004#0      GCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTTTTTAGTATATGTGA 1618
consensus_14004#1      GCTCCCCTTGNATAAGTGGAAAACAGGGAGAAGACATGTGCGTGTNNNNANNATATGTGA 359
consensus_14004#2      GCTCCCCTTGAATAAGTGGAAAACAGGGAGAAGACATGTGCGT--TTTTAGTATATGTGA 161
                       ********** ********************************      *  ********

consensus_14004#0      GCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTG 1678
consensus_14004#1      GCACAAAAGCTTGCTGAGCGCGNNGNNTTGCAAACTTGCACTTCANNGCTGNGTGCGCTG 419
consensus_14004#2      GCACAAAAGCTTGCTGCGCGCGGTGGCTTGCAAACTTGCACTTCAGTGCTGGGTGTGCTG 221
                       **************** *****  *  ******************  **** *** ****

consensus_14004#0      TACTACAATCATGTAAGGGAGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGT 1738
consensus_14004#1      TACTACAATTATGTAAGGNACGANGGGNTAGNTAANNCCCTGCATCCATNANNACAAGGN 479
consensus_14004#2      -------------------AGGATGGGTTAGTTAATACCCTGCATCCATGAAAACAAGGT 262
                                          * ** *** *** ***  ************ *  ****** 

consensus_14004#0      TTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTAC 1798
consensus_14004#1      TTNTACCTANNACCCAA--ANCTNTAGTNCCCCNCCCCNTTNCCNNCCCATTTC------ 531
consensus_14004#2      TTGTACATAAATTCTCTCTACTTGTACTACTGCGACAGAAATTCTCACGATTTGTATTAC 322
                       ** *** **    *     *  * ** * *  *  *       *   * ****       

consensus_14004#0      TGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCT--------------------- 1837
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      TGCGGCTGATGGAAGTGGAGTGCGTGTGCGGTATTGGCTATAGTTCTGTCGTTAACTTGC 382
                                                                                   

consensus_14004#0      ------------------------------------------------------------
consensus_14004#1      ------------------------------------------------------------
consensus_14004#2      CCTTTGAGGCAACAGTATGCGTGTAATTATCTGGCAATTACTCCCATCAAACAAGAGCTA 442
                                                                                   

consensus_14004#0      --------------------------------
consensus_14004#1      --------------------------------
consensus_14004#2      AATGGATATTATTTCCCCGTCAAAAAAAAAAA 474