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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1986 fasta sequence
[CGACATAAAACGGGGAGGAAATCAATCCTCCTCCCCCCCTTATCCCCTCTTCCTTCTTCGCTTCTTCTTCTTCCTCCGCATTAATTCTCTCTTCCATTCCGCCTCGCCTCGCCTCGCCTCTCGCGGCCAAGCAGATCCGGCCACCGCCTGCCCACCGACGACGATGAGCCACCGGCGAGTGGATGCGGCGGCGTGCGACTCATGGAGGCCCCCACCCACGCCGCCGCCTCCCCACGCCCGCCGCGCGCTCGCCCTCCGCGTGGGTGGGGGTGGGGGTGGCCCGGCGTTCGCGTCGCTCACCGTGCGGGAGGGGGGAGGGGGAGGGGAGGAGGGGGAGGTGGGGGAGGGGAAGGGGAAGCAGCAGCAGCTGCCGGCGGCGGGGGTGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGAGGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGAGCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAA-GGTTTGGCCTCCTTCTATGGAGGCCTGG-GTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTTGACCTCTTTG--CAT-GCTGCATTTT-GTTTGGTTT-TCCC-ATTTCTT-GGGG-CCAATTCTAGGGT-TTG-AATAGTAGCACAT-CTATTCTGTTGCTTTGCC-GG-ATATTGA-GGC-GG-CGTTAG-AAG-CAAACAAG-ACAGT-AAATTCA-TTTCTTT--AGTGG--CAAT-ATGGC--TTTA-GAT-AGC-GTCAGCA-GGAG-CA-TTAA-CCCTA-CAAGAT--CT-TATTT-ATT-GGATTG-CAAGT-ATTT-GGTG-ATAT-CATAAGTT-CTTC--AAAAAGAT--CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG-CAGAGTGAAAAATTTGTATCTCCAAAAAAAAAAAAAAAA]
[+] EMBL AK121045 [CGACATAAAACGGGGAGGAAATCAATCCTCCTCCCCCCCTTATCCCCTCTTCCTTCTTCGCTTCTTCTTCTTCCTCCGCATTAATTCTCTCTTCCATTCCGCCTCGCCTCGCCTCGCCTCTCGCGGCCAAGCAGATCCGGCCACCGCCTGCCCACCGACGACGATGAGCCACCGGCGAGTGGATGCGGCGGCGTGCGACTCATGGAGGCCCCCACCCACGCCGCCGCCTCCCCACGCCCGCCGCGCGCTCGCCCTCCGCGTGGGTGGGGGTGGGGGTGGCCCGGCGTTCGCGTCGCTCACCGTGCGGGAGGGGGGAGGGGGAGGGGAGGAGGGGGAGGTGGGGGAGGGGAAGGGGAAGCAGCAGCAGCTGCCGGCGGCGGGGGTGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGAGGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGAGCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAA GGTTTGGCCTCCTTCTATGGAGGCCTGG GTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTTGACCTCTTTG CAT GCTGCATTTT GTTTGGTTT TCCC ATTTCTT GGGG CCAATTCTAGGGT TTG AATAGTAGCACAT CTATTCTGTTGCTTTGCC GG ATATTGA GGC GG CGTTAG AAG CAAACAAG ACAGT AAATTCA TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTA CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTA ]
[+] EMBL CF324023 [ GATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGAGGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAGTGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGAGCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAAGGGTTTGGCCTCCTTCTATGGAGGCCTGGNGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCA ]
[+] EMBL AU068634 [ GCTTGTGCGGGCATGACATCTACACTTGTAACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTATGTCTCAGGTTGCTATGAACATGCTGAGAGACGAA GGTTTGGCCTCCTTCTATGGAGGCCTGG GTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGNAAAGTTGACCTCTTTG CAT GCTGCATTTT GTTTGGGTT TCCC ATTTCTTGGGGG CCAATTCTAGGGG TTGAAATAGTAGCACATCCTATTCTGTTGCTTTGCCGGG ATATTGAGGGC GGCCGTTAGNAAGCCAAACAAGNCCAGTAAAATTCATTTTCTTTTAAGTGGGCCAATAATGGCCTTTTANAATNAGCGGNCACAANGGAGCCATTTAANCCCTACCAAGGTTCCTNAATTTAATTGGGATTGNCAAGTNATTTGGGNGAANATCCATAAGTTCCTTCCNAAAAAGNTTCCAGGggtta ]
[-] EMBL CB627006 [ ATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTTGACCTTTTTG CAT GCTGCATTTT GTTTGGTTT TCCC ATTTCTT GGGG CCAATTCTAGGGT TTG AATAGTAGCACAT CTATTCTGTTGCTTTGCC GG ATATTGA GGC GG CGTTAG AAG CAAACAAG ACAAT AAATTCA TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTA CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATT ]
[+] EMBL AU068633 [ gcCACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGNAAAGTTGACCTCTTTG CAT GCTGCATTTT GTTTGGTTT TCCC ATTTCTT GGGG CCAATTCTAGGGT TTG AATAGTAGCACAT CTATTCTGTTGCTTTGCC GG ATATTGA GGC GG CGTTAG AAG CAAACAAG ACAGT AAATTCA TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTA CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTAaaaa aaaa ]
[-] EMBL CA761594 [ TTGGCCCCTTTGGCCATGGGTGCATTTTCGTTGGGTTTATCCCAATTTGGG GGGGACCAATTCTAGGGTGTGG AATAGTAGCCCAT CTATTCTGTTGCTTTCCC GGAATATTAA GGCGGG CGTTAA AAG CAACCAAG CCAAT AAATTCC TTTCTTT AGTGG CAAT ATGGC TTTA GAT AGC GTCAGCA GGAG CA TTAA CCCTC CAAGAT CT TATTT ATT GGATTG CAAGT ATTT GGTG ATAT CATAAGTT CTTC AAAAAGAT CAGGATTATCCCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTGGTCTTTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTCCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAATATTTTGTATCTCCAAAAAAAAAAAAAAAA]
[+] EMBL BI799417 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTGCCAGAGTGAAAAA ]
[+] EMBL BI799259 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAAAAA ]
[+] EMBL BI799865 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAAAAA ]
[+] EMBL BI799646 [ TTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTTATGTG CAGAGTGAAAAA ]
consensusID : consensus_14022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence
[TGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGTAACTCTGATGATGTCCTCCACCTCTTCTCTTCAGTTTGCTATAAATTTCTAAGTTGGTAAGAGTGTGTAATTCTGTTGTTGCTATATAATGGCTTTTCTGTAGCCATGGAGCTGATGCAACACTGTCTATCATCTGCGATTTTCATGACAACAATGTCAATCTGTTGTTGCTATAAAATGCCTTCCATCTAGCCATGGAGTTGATCCCAACCCTGTCTATTTTAGTACCTGTCATTTGCAATTGCATGATAAATTCCCTGAATTCATAAGTGCAGCTTCCGAATACATCAGGGATAAGTTAGAACGAACCGAGTTCTGTCTGTGTGTGTGGTGTTGAACATAACAATGGGGTACTCTTCTCTCCACTACAAATATGCAGTATTCTGGTCTTGTGGTTGTATGTGAACTGATATGGAACAATGAAACTCGTGGTTTACTAAAAATTAACACGCAATCTCAAAATTACGTTTTAGAAATTTGAAAACTATTCCGGGAAACATATCATGAAAAAGGCTTTCGTGAGGCATGGAGCATTTTTCTTTAAAAAAGAACCTGTGAGTCATGAAACTGATGTGTTTCACCACTACCAATTCGTGGTTGCTATCTGAGGGAAAGCCATAATTTGTTCCNATATACTTATAATACACTGTAACATACTCACTGTGTCC]
[+] EMBL CB627005 [TGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGATCACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGGGGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGTAACTCTGATGATGTCCTCCACCTCTTCTCTTCAGTTTGCTATAAATTTCTAAGTTGGTAAGAGTGTGTAATTCTGTTGTTGCTATATAATGGCTTTTCTGTAGCCATGGAGCTGATGCAACACTGTCTATCATCTGCGATTTTCATGACAACAATGTCAATCTGTTGTTGCTATAAAATGCCTTCCATCTAGCCATGGAGTTGATCCCAACCCTGTCTATTTTAGTACCTGTCATTTGCAATTGCATGATAAATTCCCTGAATTCATAAGTGCAGCTTCCGAATACATCAGGGATAAGTTAGAACGAACCGAGTTCTGTCTGTGTGTGTGGTGTTGAACATAACAATGGGGTACTCTTCTCTCCACTACAAATATGCAGTATTCTGGTCTTGTGGTTGTATGTGAACTGATATGGAACAATGAAACTCGTGGTTTACTAAAAATTAACACGCAATCTCAAAATTACGTTTTAGAAATTTGAAAACTATTCCGGGAAACATATCATGAAAAAGGCTTTCGTGAGGCATGGAGCATTTTTCTTTAAAAAAGAACCTGTGAGTCATGAAACTGATGTGTTTCACCACTACCAATTCGTGGTTGCTATCTGAGGGAAAGCCATAATTTGTTCCNATATACTTATAATACACTGTAACATACTCACTGTGTCC]
consensusID : consensus_14022#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[GTTTGGCCTCCTTCTATGGAGGCCTGGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGGGTGAACTACAGTTTAGGGAGAGGAGAATGNATCTATTTTTCTTTTTGATATTTANGAGATCGTATGTATTTATTTTCCTAGNTTTCAAGGTGTGGGGGAAGTGATGGTTGGAGAATTGGAACTATTTTTCTCATGNGGTTTAGGTATTGATTGATTTAAATTT]
[+] EMBL CA766232 [GTTTGGCCTCCTTCTATGGAGGCCTGGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTTAATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGCTCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCAGATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGAACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACCAAATAGCAGTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGGCAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGATTGGCCTGGTCGCTGATTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGGGTGAACTACAGTTTAGGGAGAGGAGAATGNATCTATTTTTCTTTTTGATATTTANGAGATCGTATGTATTTATTTTCCTAGNTTTCAAGGTGTGGGGGAAGTGATGGTTGGAGAATTGGAACTATTTTTCTCATGNGGTTTAGGTATTGATTGATTTAAATTT]
consensusID : consensus_14022#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 475 fasta sequence
[CAGCAGGAGCNTTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATCATAAGTTCTTCAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCNCCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGA-TTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGA-TGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTAAAAAAAAAAAAAATTATAATAAAAA]
[+] EMBL AU174730 [CAGCAGGAGCNTTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATCATAAGTTCTTCAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCNCCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGA TTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGTCGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGA TGAAATGAAAAGAGTGAACTACAGTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTAAAAAAAAAAAAAA ]
[+] EMBL BI799502 [ CATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGTGACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGACTTCTGATGCTGTGAATCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGACGCCTTTATATTTTATAATAGTATGTTGTAGAAATATAGGAGACTGAAATGAAAAGAGTGAACTAC GTTTAGGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGTATGTATTTATTTTCCTAGTTTTCAAGGTGTGGGGAAGTGATGTTGGAGAATTGAACTATTTTCTCATGTGTTTAGGTATTGATTGATTTAATTTTATCTAAAAAAATAATTATAATAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14022#0 CGACATAAAACGGGGAGGAAATCAATCCTCCTCCCCCCCTTATCCCCTCTTCCTTCTTCG 60
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 CTTCTTCTTCTTCCTCCGCATTAATTCTCTCTTCCATTCCGCCTCGCCTCGCCTCGCCTC 120
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 TCGCGGCCAAGCAGATCCGGCCACCGCCTGCCCACCGACGACGATGAGCCACCGGCGAGT 180
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GGATGCGGCGGCGTGCGACTCATGGAGGCCCCCACCCACGCCGCCGCCTCCCCACGCCCG 240
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 CCGCGCGCTCGCCCTCCGCGTGGGTGGGGGTGGGGGTGGCCCGGCGTTCGCGTCGCTCAC 300
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 CGTGCGGGAGGGGGGAGGGGGAGGGGAGGAGGGGGAGGTGGGGGAGGGGAAGGGGAAGCA 360
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GCAGCAGCTGCCGGCGGCGGGGGTGCTGGTGAGGCACCCGCTGGCGATGCTGGCGCTGGT 420
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GCCCAACGCCGTCGCGCTCTTCGCGGCGGGGGCGGCCGCGGGGGCCGTCGCCAAGACGAT 480
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 CACCGCGCCGCTCGACCGCGTCAAGCTCCTCATGCAGACGCACAGCGTGCGGGTGGTGGG 540
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GGAGAGCACCAAGAAAGGGATCGGATTCCTCGAGGCTATTGCAGAGATAGGGAAGGAAGA 600
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GGGCTTGAAGGGTTACTGGAAAGGCAATCTTCCACAGGTTATCCGCATAGTTCCTTACAG 660
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 TGCGGTGCAACTGTTTTCTTATGAAGTTTACAAGAAATTTTTCCGGAGAAAGGACGGAGA 720
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GCTTACTGTGTTTGGGAGACTTGCTGCTGGTGCTTGTGCGGGCATGACATCTACACTTGT 780
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 AACTTACCCACTGGATGTTCTTCGGCTGAGGCTAGCAGTTCAATCTGGACATAGTACTAT 840
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GTCTCAGGTTGCTATGAACATGCTGAGAGACGAAGGTTTGGCCTCCTTCTATGGAGGCCT 900
consensus_14022#2 -----------------------------------GTTTGGCCTCCTTCTATGGAGGCCT 25
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTT 960
consensus_14022#2 GGGTCCGTCTCTTATAGGAATCGCCCCTTACATTGCTGTGAACTTCTGTGTTTTTGACTT 85
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 AATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGC 1020
consensus_14022#2 AATGAAGAAATCTGTACCAGAGAAGTATAAGAGTAGACCAGAGACATCTCTGGCAACTGC 145
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 TCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCA 1080
consensus_14022#2 TCTTCTTTCAGCAACATTTGCAACTTTGATGTGTTATCCTCTGGACACTGTTAGAAGGCA 205
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ------------------------------------------------------------
consensus_14022#0 GATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGA 1140
consensus_14022#2 GATGCAAATGAAAGGATCACCCTACAACACGGTTTTGGATGCTATTCCAGGCATTGTGGA 265
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ---------------------------------------------TGCTGGTGAGGCACC 15
consensus_14022#0 ACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACC 1200
consensus_14022#2 ACGTGATGGTCTAATTGGACTATACAGAGGTTTTGTTCCAAATGCATTAAAAAATCTACC 325
consensus_14022#3 ---------------------CAGCAGGAGCNTTAACCC---TACAAGATCTTATTTATT 36
consensus_14022#1 CGCTGGCGATGCTGGCGCTGGTGCCCAACGCCGTCGCGCTC-TTCGCGGCGGGGGCGGCC 74
* * * * * *
consensus_14022#0 A-AATAGCA-GTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGG 1258
consensus_14022#2 A-AATAGCA-GTATTAAACTGACTGCGTTCGATACTGTGAAGACACTGATATCTACTGGG 383
consensus_14022#3 G-GATTGCAAGTATTTGG-TGATATCATAAGTTCTTCAAAAAGATCAGGATTATACCATA 94
consensus_14022#1 GCGGGGGCCGTCGCCAAGACGATCAC-CGCGCCGCTCGACCGCGTCAAGCTCCT--CATG 131
** ** * * * * *
consensus_14022#0 CAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAGGAAAAGTT 1318
consensus_14022#2 CAGAAGGAACTGGAGAAACTAATGCAAGAAAATCAAGAGAAAATGAGCTAAG-------- 435
consensus_14022#3 CAGACAGA--TATATGAGGTGCTGT--GGAGCNCCCTGGTGACTGAAATGGC-------- 142
consensus_14022#1 CAGACGCACAGCGTGCGGGTGGTGGG-GGAGAGCACCAAGAAAGGGATCGGATTCCTCGA 190
**** * * ** * * * * *
consensus_14022#0 GACCTCTTTGCATGCTGCATTTTGTTTGGTTTTCCCATTTCTTGGGGCCAATTCTAGGGT 1378
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 GGTAACTCTGATGATGTCCTCCACCTCTTCTCTTCAGTTTGCTATA---AATTTCTAAGT 247
consensus_14022#0 TTGAATAGTAGCACATCTATTCTGTTGCTTTGCCGGATATTGAGGCGGCGTTAGAAGCAA 1438
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 TGGTAAGAGTGTGTAATTCTGTTGTTGCTATATAATGGCTTTTCTGTAGCCATGGAGCTG 307
consensus_14022#0 ACAAGACAGTAAATTCATTTCTTTAGTGGCAATATGGCTTTAGATAGCGTCAGCAGGAGC 1498
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 ATGCAACACTGTCTATCATCTGCGATTTTCATGACAACAATGTCAATCTGTTGTTGCTAT 367
consensus_14022#0 ATTAACCCTACAAGATCTTATTTATTGGATTGCAAGTATTTGGTGATATCATAAGTTCTT 1558
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 AAAATGCCTTCCATCTAGCCATGGAGTTGATCCCAACCCTGTCTATTTTAGTACCTGTCA 427
consensus_14022#0 CAAAAAGATCAGGATTATACCATACAGACAGATATATGAGGTGCTGTGGAGCACCCTGGT 1618
consensus_14022#2 ------------------------------------------------------------
consensus_14022#3 ------------------------------------------------------------
consensus_14022#1 TTTGCAATTGCATGATAAATTCCCTGAATTCATAAGTGCAGCTTCCGAATACATCAGGGA 487
consensus_14022#0 GACTGAAATGGCATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGA-A 1677
consensus_14022#2 ---------------------------ATTGGCCTGGTCGCTGATTCTGATGCTGTGA-A 467
consensus_14022#3 ------------ATCTTCCCTATGCAGATTGGCCTGGTCGCTGATTCTGATGCTGTGA-A 189
consensus_14022#1 TAAGTTAGAACGAACCGAGTTCTGTCTGTGTGTGTGGT-GTTGAACATAACAATGGGGTA 546
* * **** * *** * * ** * *
consensus_14022#0 TCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGT---CGCCTTTATAT 1734
consensus_14022#2 TCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGA---CGCCTTTATAT 524
consensus_14022#3 TCCCAGTCCGAAGACTTGATTCATGTTCTTCAGTTCGTCTCTTCGT---CGCCTTTATAT 246
consensus_14022#1 CTCTTCTCTCCACTACAAATATGCAGTATTCTGGTCTTGTGGTTGTATGTGAACTGATAT 606
* ** * ** * *** * ** * * * * * * ****
consensus_14022#0 TTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTA 1794
consensus_14022#2 TTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGGGTGAACTACAGTTTA 584
consensus_14022#3 TTTATAATAGTATGTTGTAGAAATATAGGAGATGAAATGAAAAGAGTGAACTACAGTTTA 306
consensus_14022#1 GGAACAATGAAAC-TCGTGGTTTACTAAAAATTAACACGCAATCTCAAAATTACGTTTTA 665
* *** * * ** * ** * * * * * ** ** *** ****
consensus_14022#0 GGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGT-ATGTATTTATT 1853
consensus_14022#2 GGGAGAGGAGAATGNATCTATTTTTCTTTTTGATATTTANGAGATCGT-ATGTATTTATT 643
consensus_14022#3 GGGAGAGGAGAATGTATCTATTTTTCTTTTTGATATTTAGGAGATCGT-ATGTATTTATT 365
consensus_14022#1 GAAATTTGAAAACTATTCCGGGAAACATATCATGAAAAAGGCTTTCGTGAGGCATGGAGC 725
* * ** ** ** * * * * * * **** * * ** *
consensus_14022#0 TTCCTAGTTTTCAAGGTGTGGGG-AAGTGATG---TTGGAGAATTG-AACTATTTT--CT 1906
consensus_14022#2 TTCCTAGNTTTCAAGGTGTGGGGGAAGTGATGG--TTGGAGAATTGGAACTATTTTT-CT 700
consensus_14022#3 TTCCTAGTTTTCAAGGTGTGGGG-AAGTGATG---TTGGAGAATTG-AACTATTTT--CT 418
consensus_14022#1 ATTTTTCTTTAAAAAAGAACCTGTGAGTCATGAAACTGATGTGTTTCACCACTACCAATT 785
* * ** ** * *** *** ** * ** * * * *
consensus_14022#0 CATG-----TG-TTTAGGTATTGATTGATTTAATTTTATCTTATGTGCAGAGTGAAAAAT 1960
consensus_14022#2 CATG-----NGGTTTAGGTATTGATTGATTTAAATTT----------------------- 732
consensus_14022#3 CATG-----TG-TTTAGGTATTGATTGATTTAATTTTAAAAAAAAAAAAAATTATAATAA 472
consensus_14022#1 CGTGGTTGCTATCTGAGGGAAAGCCATAATTTGTTCCNATATACTTATAATACACTGTAA 845
* ** * *** * * * ** *
consensus_14022#0 TTGTATCTCCAAAAAAAAAAAAAAAA 1986
consensus_14022#2 --------------------------
consensus_14022#3 AAA----------------------- 475
consensus_14022#1 CATACTCACTGTGTCC---------- 861
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||