These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14046#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1193 fasta sequence [GTCATCAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTTGAGCACCCTCCCCATCACCATCCCCATCCCCGTCCGTTCACCTCCGAACTTACCTAGCCTTGTGGAGCATATATGCATCTAGTACTTTAATTAGCTTCCGGAATTTTAAATCATATACTAGGTTGATGATTAAGTAATTTATTGTAATTGCTCAAGCGAATTTAGCAACTTGATTTGTTTAGTGCACACAACCCAGTCGTCGTGTATGGATTAATTAATCAGAAGTATCTGCATCTCATTTGTCATTTGGCTGCTAGCTCACTGCACCTTTTTTTTTTTTTCAGATTTGAATCACCATACAAATATACATAGAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGCTAGTTAATTGTGATACTTGTAACCCTTTTTATCTTCTATCTTAATAACATTCGGATTGGCCTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTGTCATTGTTTACTGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAGAAGTGGACTTCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTCAACAGCTTAATGTCGATCTTGTAACCGCTTTGTAACCTCCTTTTCTTAATAAGATTTGGTCAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGTAGTTTGAGAGACTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTCTAAGTTTGAAGATTGTGGGTTGTTTTCCTGGTGTATTATCATAGAACCAGTTCTATAATCGAGGTACATCTGGTAAATT] [+] EMBL AK072661 [GTCATCAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTTGAGCACCCTCCCCATCACCATCCCCATCCCCGTCCGTTCACCTCCGAACTTACCTAGCCTTGTGGAGCATATATGCATCTAGTACTTTAATTAGCTTCCGGAATTTTAAATCATATACTAGGTTGATGATTAAGTAATTTATTGTAATTGCTCAAGCGAATTTAGCAACTTGATTTGTTTAGTGCACACAACCCAGTCGTCGTGTATGGATTAATTAATCAGAAGTATCTGCATCTCATTTGTCATTTGGCTGCTAGCTCACTGCACCTTTTTTTTTTTTTCAGATTTGAATCACCATACAAATATACATAGAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGCTAGTTAATTGTGATACTTGTAACCCTTTTTATCTTCTATCTTAATAACATTCGGATTGGCCTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTGTCATTGTTTACTGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAGAAGTGGACTTCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTCAACAGCTTAATGTCGATCTTGTAACCGCTTTGTAACCTCCTTTTCTTAATAAGATTTGGTCAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGTAGTTTGAGAGACTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTCTAAGTTTGAAGATTGTGGGTTGTTTTCCTGGTGTATTATCATAGAACCAGTTCTATAATCGAGGTACATCTGGTAAATT] consensusID : consensus_14046#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 987 fasta sequence [CCGAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGNCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGNCGTCTNCANTTTCAATAATGATCTAGTATATTAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTTAGGCATTTAAGACATNACT-GTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTATTTGCCGAGAGGCAGAGCGGCTAAAGCCTGCAGCAGTCATTCTGGGCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGCAGCCCCAGTTATCATTGTTCCAGGCA-AAGAAGCTGGTGAACA-GTCTGTGCTTTAAAGGGCGGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTATTGTAATTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAG-CAAGGCAAATATAAACACACAAATGTACTTGTATTGCCA-TTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGACATGCCGTTACGTAACGTATA] [+] EMBL C93431 [CCGAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGNCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGNCGTCTNCANTTTCAATAATGATCTAGTATATTAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTTAGGCATTTAAGACATNACT GTCCGGA ] [+] EMBL AK070986 [ cAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCGTCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGACGGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCCGGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAGGGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCTCGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTGTCAATAATGATCTAGTATATGAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTGAGGCATTGAAGACATCACTGGTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTATTTGCCGAGAGGCAGAGCGGCTAAAGCCTGCAGCAGTCATTCTGGGCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGCAGCCCCAGTTATCATTGTTCCAGGCA AAGAAGCTGGTGAACA GTCTGTGCTTTAAAGGGCGGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTATTGTAATTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAG CAAGGCAAATATAAACACACAAATGTACTTGTATTGCCA TTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATAT ] [+] EMBL BI812053 [ AGAGCGGCTAAAGCCT CA CAGTCATTCTGGCCACTCGTGGAAGAGGTCTAATTCAGAGTGTGTT CAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGCAGCCCCCGTTATCATTGTTCCA GCACAAGAAGCTGGTGAACACGTCTGTGCTTTAAA GGCGGAAGAATGAAGATAGGTT CAGATGATGGTGCGTCGGTATGGT TTGTGCTTTC ATTATTGTAATTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTGTTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAGCCAAGGCAAATATAAACACACAAATGTACTTGTATTGCCACTTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACCAATATTGATGTGGTTAAAAAAAAAA ] [+] EMBL CF319382 [ TATAAACACACAAATGTACTTGTATTGCCA TTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGACATGCCGTTACGTAACGTATA] [+] EMBL CF337011 [ TATAAACACACAAATGTACTTGTATTGCCA TTGATGACATTAGTACAGTTTCTATGAATAAAGAA ] consensusID : consensus_14046#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 896 fasta sequence [TTTTTTTTTTTTTTTTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAGAAGTTTGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAGAGGTCCTCGACGATGTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCTCGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGTACCTCATCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTCCGTGGCCTGCCCACGGCGGGCTCTGACGTGGATGTAGTCGGTCTTCTGGCCGGCGGTCACCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGGCTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG] [+] EMBL CA762332 [TTTTTTTTTTTTTTTTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGGGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTTTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGGGGGAGCCAATGTCCCAACCTGCAGCTCCTTTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGGCATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAAAAGTTTGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCCCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAAAGGTCCTCGACGATNTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTAATGATCTCGTCAAGCATGCCGGCCTTGCCGGTGACCTTGGTGCAACCGGGCACCAGCTCCTGC GGGACCTCATCCTCTCGGTGAT ] [-] EMBL AU097324 [ TTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCG ] [-] EMBL AU101988 [ TTTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATG ] [-] EMBL AK119183 [ ATGTACTTGTATTGCCATTGATGACATTAGTACGGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAGAAGTTTGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAGAGGTCCTCGACGATGTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCTCGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGTACCTCATCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTCCGTGGCCTGCCCACGGCGGGCTCTGACGTGGATGTAGTCGGTCTTCTGGCCGGCGGTCACCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGGCTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG] [-] EMBL AK073952 [ ATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCTTCCTTCATTCCTTCTTACATTTCCATTTTGAGATTGTCTAGCAAACAATCACTCTGTACTGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGCAGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCCGCCCGGTGGTGAGTACTGGTTACTGACGACCATCTCCAGCCCATAGCCAGAGGATCCTGCAGAAGTTT TCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCCATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCGCCTGGCTGAGCTGCCGGCCGAAGAGGTCCTCGACGATGTTGAAGTTCACCACCGGGTTTGATGCCGCGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCTCGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGTACCTCATCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTCCGTGGCCTGCCCACGGCGGGCTCTGACGTGGATGTAGTCGGTCTTCTGGCCGGCGGTCACCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGGCTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG] consensusID : consensus_14046#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 567 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTGGGGCTGAAGATTCTTTATTCATAGAAACTGTACTAATGTCATCAATGGCAATACAAGTACATTTGGGGGTTTATATTTGCCTTGCTACTCCACCAACTTCTAAACAATCCATCATCCTTCATTACACTACCAAACAATACCAATCCAGTACAGATATGCTAACAATTCACAACACTACGTATAAAATTACAATAATTGAAAGCACAACACCATACCGACGCACCATCATCTGCAACCTATCTTCATTCTTCCGCCCTTTAAAGCACAAACTGTTCACCAGCTTCTGCAAAGACACAACTTAGCCTTACTTGTACTGGAAGTAAAAGATAATTCGTCTGCAAAATATACCCTGACAGATACTTCTAATTTCTGGATGAATGCATTCAGGTCCCGCTCAAAGAAGGCATCTGATCTAAGGATCTAAGCATCTTATCTTGGTTTGAATTTTTTTAGAATAGCGATAAATTCAACCACTTCAATTAAATGAATCTTATCATTAGAAGACCATGATATAAATAAATTTACTCTCCCCTTGTCTCGGC] [+] EMBL CA760732 [TTTTTTTTTTTTTTTTTTTTTTTTGGGGCTGAAGATTCTTTATTCATAGAAACTGTACTAATGTCATCAATGGCAATACAAGTACATTTGGGGGTTTATATTTGCCTTGCTACTCCACCAACTTCTAAACAATCCATCATCCTTCATTACACTACCAAACAATACCAATCCAGTACAGATATGCTAACAATTCACAACACTACGTATAAAATTACAATAATTGAAAGCACAACACCATACCGACGCACCATCATCTGCAACCTATCTTCATTCTTCCGCCCTTTAAAGCACAAACTGTTCACCAGCTTCTGCAAAGACACAACTTAGCCTTACTTGTACTGGAAGTAAAAGATAATTCGTCTGCAAAATATACCCTGACAGATACTTCTAATTTCTGGATGAATGCATTCAGGTCCCGCTCAAAGAAGGCATCTGATCTAAGGATCTAAGCATCTTATCTTGGTTTGAATTTTTTTAGAATAGCGATAAATTCAACCACTTCAATTAAATGAATCTTATCATTAGAAGACCATGATATAAATAAATTTACTCTCCCCTTGTCTCGGC] consensusID : consensus_14046#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 164 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCACATCAATATTTTGGGGTTGAAAATTTTTTTTTTATAAAAACCGTACTAATGTTATCAATGGCAATACAAGAACATTTGGGGGTTTATATTTGCCTTGCTACTCCTTCAATCCAT] [+] EMBL CF338035 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACCACATCAATATTTTGGGGTTGAAAATTTTTTTTTTATAAAAACCGTACTAATGTTATCAATGGCAATACAAGAACATTTGGGGGTTTATATTTGCCTTGCTACTCCTTCAATCCAT] consensusID : consensus_14046#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 162 fasta sequence [TATAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACGGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG] [+] EMBL CF338034 [TATAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACGGTTTCTATGAATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG] consensusID : consensus_14046#6 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 114 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTATTTTTTATTCATATAAACTGTACTAATGTCATTAATGGCAATACAAATACATTTGTGTGTTTAT] [+] EMBL CF319381 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTTATTTTTTATTCATATAAACTGTACTAATGTCATTAATGGCAATACAAATACATTTGTGTGTTTAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14046#3 -----------------------------------------------TTTTTTTTTTTTT 13 consensus_14046#4 ----------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38 consensus_14046#6 --------------------------------TTTTTTTTTTTTTTTTTTTTTTTTTTTT 28 consensus_14046#1 ---CCGAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCG 57 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 ---------------------------------------------TTTTTTTTTTTTTTT 15 consensus_14046#0 GTCATCAACGATTGCTAGATAGCCAAAGCTCTTTTGTTGTTTCGGTGCTCTTCGGCTTCG 60 consensus_14046#3 TTTTTTT-------------TTTTGGGGCTGAAGATTCTTTATTCATAGAAACTGTACTA 60 consensus_14046#4 TTTTTTTAACCACATCAATATTTTGGGGTTGAAAATTTTTTTTTTATAAAAACCGTACTA 98 consensus_14046#6 TTTTTTT-------------TTTTTTGGTTTTTTATTTTTTATTCATATAAACTGTACTA 75 consensus_14046#1 TCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGAC 117 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 TTTTAAACACACAAATGTACTTGTATTGCCATTGATGACATTAGTACAGTTTCTATGAAT 75 consensus_14046#0 TCGTCGGCGAGGGAGGGTTTGGTTTGGGAAGTTGGGGGGGATGGATCGGTCGATGGAGAC 120 consensus_14046#3 ATGTCATCAATGGCAATACAAGTACATTTGGGGGTTTATATTTGCCTTGCTACTCCACCA 120 consensus_14046#4 ATGTTATCAATGGCAATACAAGAACATTTGGGGGTTTATATTTGCCTTGCTACTCCTTCA 158 consensus_14046#6 ATGTCATTAATGGCAATACAAATACATTTGTGTGTTTAT--------------------- 114 consensus_14046#1 GGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCC 177 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 AAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAACTCTTGGAATGCGGACTTCTCCT 135 consensus_14046#0 GGTGGAGGAGGAGGTGGAGGAGTACAGCTGGAGGGAGGTGCTGCTGCCGCGGCTCGTCCC 180 consensus_14046#3 ACTTCTAAACAATCCATCATCCTTCATTACACTACCAAACAATACCAATCCAGTACAGAT 180 consensus_14046#4 ATCCAT------------------------------------------------------ 164 consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 GGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAG 237 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 TCCTTCATTCCTTCTTACATTTCCATTTT-GAGATTGTCTAGCAAACAATCACTCTGTAC 194 consensus_14046#0 GGTGGTGTCGGACGCGGCGCCGGAGCTGGAGCGGGAGACGGGGGAGCGCCGCCGGGGCAG 240 consensus_14046#3 ATGCTAACAATTCACAACACTACGTATAAAATTACAATAATTGAAAGCACAACACCATAC 240 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 GGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGNCTTCGACTGGGCGCT 297 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 TGACTGAAACGGTGCATCAAATCCACTGAACAAACCGTGAGAGCCAATGTCCCAACCTGC 254 consensus_14046#0 GGAGCTCCTCGTCGCCGTCGACTTCGGGCCCAACTCCAAGCACGCCTTCGACTGGGCGCT 300 consensus_14046#3 CGACGCACCATCATCTGCAACCTATCTTCATTCTTCCGCCCTTTAAAGCACAAACTGTTC 300 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 CGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGNCGTCTNCANTTTCAA 357 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 AGCTCCATTCACGTTGAGGCATGGCTCCACCGATGCACCGGCCGGCACCGACATCGGCCC 314 consensus_14046#0 CGTGCACTTCGCCCGCATGGCCGACACGCTCCACCTCGTCCACGCCGTCTCCAGTTGAGC 360 consensus_14046#3 ACCAGCTTCTGCAAAGACACAACTTAGCCTTACTTGTACTGGAAGTAAAAGATAATTCGT 360 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 TAATGATCTAGTATATTAGAAAAGTCAGGAACTCATGGAGGATTTAGCCATTTAGGCATT 417 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 GCCCGGTGGTGAGTACTGGTTAC-TGACGACCATCTCCAGCCCATAGCCAGAGGATCCTG 373 consensus_14046#0 ACCCTCCCCATCACCATCCCCATCCCCGTCCGTTCACCTCCGAACTTACCTAGCCTTGTG 420 consensus_14046#3 CTGCAAAA-TATACCCTGACAGATACTTCTAATTTCTGGATGAATGCATTCAGGTCCCGC 419 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 TAAGACAT-NACTGTCCGGACCAAGGCAAGGATTGTTGAAGGGGATGCTGGAAAGGTTAT 476 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 CAGAAGTT-TGCATCTGCTGCAAGGGGCTCATCTGGAGGCAGGAAGGCTCGACCTGCGCC 432 consensus_14046#0 GAGCATATATGCATCTAGTACTTTAATTAGCTTCCGGAATTTTAAATCATATACTAGGTT 480 consensus_14046#3 TCAAAGAAGGCATCTGATCTAAGGATCTAAGCATCTTATCTTGGTTTGAATTTTTTTAGA 479 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 TTGCCGAGAGGCAGAGCGGCTAAAGCCTGCAGCAGTCATTCTGGGCACTCGTGGAAGAGG 536 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 ATCGGCAGCGCCATGGCCGGCAGAGCCGCAGGGTTGCACGCCG------CCTGGCTGAGC 486 consensus_14046#0 GATGATTAAGTAATTTATTGTAATTGCTCAAGCGAATTTAGCAACTTGATTTGTTTAGTG 540 consensus_14046#3 ATAGCGATAAATTCAACCACTTCAATTA---AATGAATCTTATCATTAGAAGACCATGAT 536 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 TCTAATTCAGAGTGTGTTGCAGGGAAGTGTCAGTGAATATTGCTTCCACAACTGTAAAGC 596 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 TGCCGGCCGAAGAGGTCCTCGACGATGT-----TGAAGTTCACCACCGGGTTTGATGCCG 541 consensus_14046#0 CACACAACCCAGTCGTCGTGTATGGATTA--ATTAATCAGAAGTATCTGCATCTCATTTG 598 consensus_14046#3 ATAAATAAATTTACTCTCCCCTTGTCTCGGC----------------------------- 567 consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 AGCCCCAGTTATCATTGTTCCAGGCAAAGAAGCTGGTGAACAGTCTGTGCTTTAAAGGGC 656 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 CGATCTTCATGGACAAGAACTCGACTTGCTTCTGCAGGGACTGCACGTAGTTGATGATCT 601 consensus_14046#0 TCATTTGGCTGCTAGCTCACTGCACCTTTTTTTTTTTTTCAGATTTGAATCACCATACAA 658 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 GGAAGAATGAAGATAGGTTGCAGATGATGGTGCGTCGGTATGGTGTTGTGCTTTCAATTA 716 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 CGTCGAGCATGCCGGCCTTGCCGGTGACCTTGTTGCAACCGGGCACCAGCTCCTGCAGGT 661 consensus_14046#0 ATATACATAGAATGTGATAGCAGCAGCCCAGGCAGCGAGCCTATATAATTTTCAGTAGGC 718 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 TTGTAA--TTTTATACGTAGTGTTGTGAATTGTTAGCATATTTGTACTGGATTGGTATTG 774 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 ACCTCA--TCCTCTCGCTGATCCTCTCCCTCCTCACCCGTTCGGCGAGGCTGTGGCTGTC 719 consensus_14046#0 TAGTTAATTGTGATACTTGTAACCCTTTTTATCTTCTATCTTAATAACATTCGGATTGGC 778 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 TTTGGTAGTGTAATGAAGGATGATGGATTGTTTAGAAGTTGGTGGAGTAGCAAG--GCAA 832 consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 CGTGGCCTGCCCACGGCGGGCTCTGACGTGGAT-GTAGTCGGTCTTCTGGCCGGCGGTCA 778 consensus_14046#0 CTTTCTTCGGTCATCCTAGCAAGATACAATGCAGCATCACCGTGTTGTGTCATTGTTTAC 838 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 ATATAAACACACAAATGTACTTGTATTGCC--ATTGATGACATTAGTACAGTTTCTATGA 890 consensus_14046#5 -TATAAACACACAAATGTACTTGTATTGCC--ATTGATGACATTAGTACGGTTTCTATGA 57 consensus_14046#2 CCGTCGACGCCGAGGTCGCCGGGGAATCCTTGGGTGACGCCACCTCCGCCTTCTTCTTGG 838 consensus_14046#0 TGTTGGATGAACCTATATAGAGGCCTGACTTCCAGGAGGTCAAATTTATGATGGACTTAG 898 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 ATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAA 950 consensus_14046#5 ATAAAGAATCTTCAGCCACAAATATTGATGTGGTTAAAAAAAAAAAAAAAAAAAAAAAAA 117 consensus_14046#2 CTCCTGGCCGTGCCCTCTCCGGCCTTCCTTTCCCCACCGCCGCCGCCATCTGATCGGG-- 896 consensus_14046#0 AAGTGGACTTCCGTTTGATGATCTAGTTCATTAGAGAAGTGAAAGCAGTACCCCCAGCTC 958 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 AAAAAAAAAACACTGACATGCCGTTACGTAACGTATA----------------------- 987 consensus_14046#5 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCTTGCCG--------------- 162 consensus_14046#2 ------------------------------------------------------------ consensus_14046#0 AACAGCTTAATGTCGATCTTGTAACCGCTTTGTAACCTCCTTTTCTTAATAAGATTTGGT 1018 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 ------------------------------------------------------------ consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 ------------------------------------------------------------ consensus_14046#0 CAGCCTAATCCTTCGGCTGACCCGTTAAAAAAGGTTAAAACAGTACTGTAGTTTGAGAGA 1078 consensus_14046#3 ------------------------------------------------------------ consensus_14046#4 ------------------------------------------------------------ consensus_14046#6 ------------------------------------------------------------ consensus_14046#1 ------------------------------------------------------------ consensus_14046#5 ------------------------------------------------------------ consensus_14046#2 ------------------------------------------------------------ consensus_14046#0 CTAAGGGAATAGTAGCACTTGGGTATTGTAACTTTCTAAGTTTGAAGATTGTGGGTTGTT 1138 consensus_14046#3 ------------------------------------------------------- consensus_14046#4 ------------------------------------------------------- consensus_14046#6 ------------------------------------------------------- consensus_14046#1 ------------------------------------------------------- consensus_14046#5 ------------------------------------------------------- consensus_14046#2 ------------------------------------------------------- consensus_14046#0 TTCCTGGTGTATTATCATAGAACCAGTTCTATAATCGAGGTACATCTGGTAAATT 1193 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||