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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14048#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 605 fasta sequence
[CGCCCAAGCCGNCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCA-CACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT-GGACAAATC-AGATTTT-GGGACCT-GGGAACTTAGTTT-GT-GGTTGTACTC-AATGTTCT-AGGTGTTGAT-GT-CCTTTGC-TT-CCGATTTT-ATTTT-ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAA]
[+] EMBL AU062787 [CGCCCAAGCCGNCGCTNCTCGTCCCGTCGCCGGCCGGCGCGGNA CACCGCATCTNCTCGCGCNGNCGNCTCACGGCGCTTCANCCTCCTCCTCTCGCCACAAATAACGCCGCCTCCTCTCACCGTAGATGCCGNCNTTNGTCAGATCTNACGGAGCTCAACATCGGTGCGGCCTTCTNCGTTCGGTNTNCACCATCCGGNCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATNATTTGGTGAAGATCGAATGGTGGCAAAGATAGGNCAACAAattc ]
[+] EMBL AU066321 [CGCCCAAGCCG CGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCA CACCGCATCTGCTCGCGCCGGCGCCTCACGTCGNTTCAGCCTCCTCCTCTCGCCACAAATGACGGCGTCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTNTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGNATGNAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT A ]
[+] EMBL OS0476A [ GCTCGTCCCGTCGCCCGCCGGCGCGGCA CACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTT T AGGTGTTGAT GT CNTTTGC TT NCGATTTT A TTT AACTTACTGTGGNGATG ATAAGAAAAct ]
[+] EMBL AU092610 [ GGCGCGGCA CACNGCATCTGCTCGCGCCGGGGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCA TGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAA]
[+] EMBL C27679 [ cggncnGCANCACCGCATCTGCTCGCGCCGNC CNTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCAATTCTTAAATTTATGGGACAAATCAAGATTTTGGGGACCTGGGGAACTTAGTTTNGTGGGTTGTACTCAAATGTTCTNAGGGGTTGATGGTCCCTTNGCTTT CCGATTTTAATTTTAACCTTACTGTGGGGAatg ]
[+] EMBL AU223454 [ CGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTNTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAAaaaaa ]
[+] EMBL AU101920 [ GACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCA TGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAA ]
[+] EMBL AU101919 [ AGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCNTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTAT GGACAAATC AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGT ]
[+] EMBL AK060723 [ C AGATTTT GGGACCT GGGAACTTAGTTT GT GGTTGTACTC AATGTTCT AGGTGTTGAT GT CCTTTGC TT CCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATT ]
[+] EMBL BM037872 [ tgcC TTCCCGATTTT ATTTT ACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGGCACAGATTGACTTACCACATGTGAATTTGTCCACTaaaaa ]
consensusID : consensus_14048#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 430 fasta sequence
[CTCCTCTTCCCCGTAGACCCGCCTCTCGTCAGATCTGACGGAGCTCAACACTCGGTGCGCCCTTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGCCAAAGATAGGACAACCAATGCCATGCCAGTTACCATCTTCATTTCTTAAATTTATGGACCAAATCAGATTTTGGGACCTGGGAACCTTAGTTTGTGTTGTACCTCAATGTTCTAGGTGTTGATGTCCCTTTGCTTCCGATTTTATTTTACCCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCAAAAA]
[+] EMBL BI800299 [CTCCTCTTCCCCGTAGACCCGCCTCTCGTCAGATCTGACGGAGCTCAACACTCGGTGCGCCCTTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGCCAAAGATAGGACAACCAATGCCATGCCAGTTACCATCTTCATTTCTTAAATTTATGGACCAAATCAGATTTTGGGACCTGGGAACCTTAGTTTGTGTTGTACCTCAATGTTCTAGGTGTTGATGTCCCTTTGCTTCCGATTTTATTTTACCCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCAAAAA]
consensusID : consensus_14048#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 428 fasta sequence
[AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTA]
[+] EMBL AU065473 [AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATCTTCTACTACCTTGTCTAGGTTGAGGAGCTGGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTA]
[+] EMBL CA758055 [AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGG ]
consensusID : consensus_14048#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 382 fasta sequence
[AGAGGACGAGACAAGGGGGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACATGCGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAAAAAAAAA]
[-] EMBL CA761953 [AGAGGACGAGACAAGGGGGGACCTCGTCATCTTCTACTACCTTGTCTAGGTCATGGAGATCGAATGGTGGCAAAGATAGGACAACAATGCATGCAGTTACCATCTTCATTTCTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACATGCGAATTTGTCAACTGATACAATGCATAGCAGTGTTAATTATCGTTTTAAAAAAAAAAAAA]
[+] EMBL CA767082 [ CAGATTTTGGGACCTGGGAACTTAGTTTGTGGTTGTACTCAATGTTCTAGGTGTTGATGTCCTTTGCTTCCGATTTTATTTTACCTTACTGTGGTGATGTATAAGAAAAACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGAGGACACAGATTGACTTACCACATGCGAATTTG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14048#1 ------------------------------------------------------------
consensus_14048#3 ------------------------------------------------------------
consensus_14048#0 CGCCCAAGCCGNCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCGCATCTGCTCGC 60
consensus_14048#2 ------------------------------------------------------------
consensus_14048#1 ----------------------------------------------------CTCCTCTT 8
consensus_14048#3 ------------------------------------------------------------
consensus_14048#0 GCCGGCGCCTCACGTCGCTTCAGCCTCCTCCTCTCGCCACAAATGACGCCGCCTCCTCTC 120
consensus_14048#2 ------------------------------------------------------------
consensus_14048#1 CCCCGTAGACCCGCCTCTCGTCAGATCTGACGGAGCTCAACACTCGGTGCGCCCTTTCTC 68
consensus_14048#3 ------------------------------------------------------------
consensus_14048#0 ACCGTAGATGCCGCCTCTCGTCAGATCTGACGGAGCTCAACATCGGTGCGGCC--TTCTC 178
consensus_14048#2 ------------------------------------------------------------
consensus_14048#1 CGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCGTCAAGAACCTCAAGGACCTCGT 128
consensus_14048#3 ---------------------------------AGAGGACGAGACAAGGGGGGACCTCGT 27
consensus_14048#0 CGTTCGGTCTCCACCATCCGGCCACTGCGTCTTCCCCATCAAGAACCTCAAGGACCTCGT 238
consensus_14048#2 -----AGCGGCGCCCAAGCCGCCGCTGCTCGTCCCGTCGCCCGCCGGCGCGGCACACCG- 54
* * * ** **
consensus_14048#1 CATCTTCTACTACCT-TGTCT-AGGTCATGGAG-------------------ATCGAATG 167
consensus_14048#3 CATCTTCTACTACCT-TGTCT-AGGTCATGGAG-------------------ATCGAATG 66
consensus_14048#0 CATCTTCTACTACCT-TGTCT-AGGTCATGGAGCTACTATTATTTGGTGAAGATCGAATG 296
consensus_14048#2 CATCTGCTCGCGCCGGCGCCTCACGTCGCTTCAGCC----------------TCCTCCTC 98
***** ** ** * ** * *** * *
consensus_14048#1 GTGCCAAAGATAGGACAACCAATGCCATGCCAGTTACCATCTTCATTTCTTAAATTTATG 227
consensus_14048#3 GTGGCAAAGATAGGACAAC-AATGC-ATGC-AGTTACCATCTTCATTTCTTAAATTTATG 123
consensus_14048#0 GTGGCAAAGATAGGACAAC-AATGC-ATGC-AGTTACCATCTTCATTTCTTAAATTTATG 353
consensus_14048#2 TCGCCACAAATGACGCCGC--CTCCTCTCACCGTAGATGCCGCCTCTCGTCAGATCT--- 153
* ** * ** * * * * * ** * * * * * ** *
consensus_14048#1 GACCAAATCAGATTTTGGGACCTGGGAACCTTAGTTTGTG-TTGTACCTCAATGTTCTAG 286
consensus_14048#3 GAC-AAATCAGATTTTGGGACCTGGGAAC-TTAGTTTGTGGTTGTAC-TCAATGTTCTAG 180
consensus_14048#0 GAC-AAATCAGATTTTGGGACCTGGGAAC-TTAGTTTGTGGTTGTAC-TCAATGTTCTAG 410
consensus_14048#2 GACGGAGCTCAACATCGGTGC--GGCCTTCTCCGTTCGGTCTCCACCATCCGGCCACTGC 211
*** * * * ** * ** * *** * * * ** **
consensus_14048#1 GTGTTGATGTCCCTTTGCTTCCGATTTTATTTTACCCTTACTGTGGTGATGTATAAGAAA 346
consensus_14048#3 GTGTTGATGTCC-TTTGCTTCCGATTTTATTTTACC-TTACTGTGGTGATGTATAAGAAA 238
consensus_14048#0 GTGTTGATGTCC-TTTGCTTCCGATTTTATTTTACC-TTACTGTGGTGATGTATAAGAAA 468
consensus_14048#2 GTCTTCCCCATCAAGAACCTCAAGGACCTCGTCATC--TTCTACTACCTTGTCTAGGTTG 269
** ** * * ** * * * * ** *** ** *
consensus_14048#1 AACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGA 406
consensus_14048#3 AACTTCTCAGTGGGTTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGA 298
consensus_14048#0 AACTTCTCAGTGGGCTCTTTGCTAAACACTAAAATTTAAATGCTTGTAATATTGTTTGGA 528
consensus_14048#2 AGGAGCT-GGCTGGCTGACAGAAACATAGTACCATGGTCATGGAGCTACTATTATTTGGT 328
* ** * ** * * * * * ** ** *** ** **** *****
consensus_14048#1 GGACACAGATTGACTTACCAAAAA------------------------------------ 430
consensus_14048#3 GGACACAGATTGACTTACCACATGCGAATTTGTCAACTGATACAATGCATAGCAGTGTTA 358
consensus_14048#0 GGGCACAGATTGACTTACCACATGTGAATTTGTCAACTGATACAATGCATAGCAGTGTTA 588
consensus_14048#2 GAAGATCGAATGG--TGGCAAAGATAGGACAA-CAATGCATGCAGTTACCATCTTCATTT 385
* * ** ** * ** *
consensus_14048#1 -------------------------------------------
consensus_14048#3 ATTATCGTTTTAAAAAAAAAAAAA------------------- 382
consensus_14048#0 ATTATCGTTTTAAAAAA-------------------------- 605
consensus_14048#2 CTTAAATTTATGGACAAATCAGATTTTGGGACCTGGGAACTTA 428
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||