These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14064#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1613 fasta sequence [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG-CCGCCG-CGC-GGGT---CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGCTCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGGATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA-TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT-GCT-GTAGAGATAATGAGGATGAACAAAACAAATGG-TGGTATT-GATGGGGATTTTGCAGTTTCTCT-GGGCA-TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA-TTTTTGCGGGATTG-TTGT-TGGTTTTG-TTAA-TGCTTGTG-GTGAGGTTGAGGACTGA-GCTGAGGAATAATGGTACAACTTGGTC-TTGGCA-GCCA-AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA-TTACTTCAGTTGTAAGTATTGTA-GTTTTACACTT-TTACTCCCTTAA-TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT-TTGTTTGTA-TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTG-CATTTATCTAGTTTAAAAAAAAA] [+] EMBL AK106076 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGCTCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGGATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAA ] [+] EMBL CB662874 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCG ] [+] EMBL CB638143 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACAGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGG ] [+] EMBL CB638127 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACG CCGCCG CGC GGGT CTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTCCCACGTCCTGCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTTCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCT ] [+] EMBL AU166476 [CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTACCCTCCCG ] [+] EMBL AK069148 [ CCCGGCGGACAACCACC TCCTC GCCTGCGGCGCG ACGGCA CCGGCCGTGCTCCCCGACGGCCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCC ACG CGCC TCCG CTCCCCGG CA CCTAC CCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGCCGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCATCCTACACGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGCCTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCACCCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGATGCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCGAACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTGGTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGCTCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGGATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GGGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGA ] [+] EMBL CA767397 [ TGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAGCAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGATTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGTGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGTCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTGCTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGCGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACCTCAGTTGTAAGTATTGTA GTTTTACGCTT TTACTCCCTTAA TGGTAAGTTTT ] [-] EMBL CB638144 [ CATATTACATCGACTTTGTTGTGGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTTTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGGACTGCTTTTAATAGCTCTATCCAGTTTGTG ] [+] EMBL BQ905914 [ TTTGTT TGNATTTCGAGGATGAATGGCCCCTGAAA TGCCCATTTGGTGGCTCGAAGAATAGTCGATCAGACGAAGTGA CGGTATTCTTAATGGCTCGTAGAGATAATGAGGATGAACTAAAC AATGGCTGGTATTCGATGGGGATTTTGCAGTTTCTCTCGGGCN TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTGCTCGCTCACTGCTGTGTGGTTTCACTTTTTGCGGGATTGCTTGTCTGGTTTTGCTTAACTGCTTGTGCGTGAGGTTGAGGACTGACGCTGAGGAATAATGGTACAACTTGGTCATTGNCACGCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGCGGCTGTTGACCTATTGTATGTAATGACATATTGCACTTACTTCAGTTGTAAGTATTGTACGTTTTACACTTCTTACTCCCNTAACTGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATATCTTGTTTGTACTTAGTACTGCTTTTAATAaaaaa ] [-] EMBL CB638128 [ AATTGGCCA TTGGTGGCTCGAAGAATAGCCGATCAGACGAAGTGAGCGGTATTCTTAAT GCT GTAGAGATAATGAGGATGAACAAAACAAATGG TGGTATT GATGGGGATTTTGCAGTTTCTCT GGGCA TGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA AGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCA AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTG ] [+] EMBL BI806767 [ GGGCATTGGAGTATGTGGCTAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCC AATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTG CATTTATCTAGTTTAAAAAAAAA] [+] EMBL BI795914 [ c TGGAGTATGTGGCTA CAAGGGGATCGGAGAATTTGCTCGCTCACTGCTGTGTGGTTTCA TTTTTGCGGGATTG TTGT TGGTTTTG TTAA TGCTTGTG GTGAGGTTGAGGACTGA GCTGAGGAATAATGGTACAACTTGGTC TTGGCA GCCACAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGCGGCTGTTGACCTATTGTATGTAATGACATATTGCA TTACTTCAGTTGTAAGTATTGTA GTTTTACACTT TTACTCCCTTAA TGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATAT TTGTTTGTA TTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTGCCATTTATCTAGTTTAAAAAAAAA] consensusID : consensus_14064#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 529 fasta sequence [ATTGATGGGGATTCTTGCAGTTTCTCTGGGCATTGGAGTATTGTGGCTATGTCATAGGTGGATCGGAGAATTTGCTCGCTCACTGTCATGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCATGAGGAATAATGGTACAACTTGGTCTTGGCATGCCAAATGATTCTGGTGACAGGGAAGCATGGCTAGAGCATATCAAACTTGTGTGCCGCTGAAGACAAGACTGATTGGAACATGCATGGAGATGGATAATGCTTTGGAGGAGGCTGTTGAAACTGCGGCTGGTTGGACACTGATGTGGTGATGGTGAATGACATGATTGGCAATTGACTTGCAGTGTGTGAAAGTGATTGTGAGTGTTTGACACTGTTNTGACTGCCCTTGAATGGGTGAGTGTTTGCGGNTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATATTTGTTTGTATTAGTACTGCTTTTAATAAAAAA] [+] EMBL BQ905908 [ATTGATGGGGATTCTTGCAGTTTCTCTGGGCATTGGAGTATTGTGGCTATGTCATAGGTGGATCGGAGAATTTGCTCGCTCACTGTCATGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCATGAGGAATAATGGTACAACTTGGTCTTGGCATGCCAAATGATTCTGGTGACAGGGAAGCATGGCTAGAGCATATCAAACTTGTGTGCCGCTGAAGACAAGACTGATTGGAACATGCATGGAGATGGATAATGCTTTGGAGGAGGCTGTTGAAACTGCGGCTGGTTGGACACTGATGTGGTGATGGTGAATGACATGATTGGCAATTGACTTGCAGTGTGTGAAAGTGATTGTGAGTGTTTGACACTGTTNTGACTGCCCTTGAATGGGTGAGTGTTTGCGGNTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAAGATATTTGTTTGTATTAGTACTGCTTTTAATAAAAAA] consensusID : consensus_14064#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 443 fasta sequence [TAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCTGAGGAATAATGGTACAACTTGGTCTTGGCAGCCAAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCATTACTTCAGTTGTAAGTATTGTAGTTTTACACTTTTACTCCCTTAATGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAANATATTTGTTTGTATTAGTACTGCTTTTAATAGCTCTAAAAAAAAAAAAAA] [+] EMBL AU166477 [TAGCAAGGGGATCGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCTGAGGAATAATGGTACAACTTGGTCTTGGCAGCCAAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAAGACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTGACCTATTGTATGTAATGACATATTGCATTACTTCAGTTGTAAGTATTGTAGTTTTACACTTTTACTCCCTTAATGGTAAGTTTTCGGTTATTTGAGCTTGGCTAATGGAGAAAACGGTCGTGGTGTTGTATCTGGCTCAANATATTTGTTTGTATTAGTACTGCTTTTAATAGCTCTAAAAAAAAAAAAAA] consensusID : consensus_14064#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 165 fasta sequence [TGGTAAGTGTGTTCGGGTTATTTGAGCTTGGGCTAATGGAGAAAACGGTCAGTGGGTGTTGTATGCTGGGCTCCAAGATATTGTGTTTGGTATTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCNGCAATTTATCTAAAAAAA] [+] EMBL BQ909220 [TGGTAAGTGTGTTCGGGTTATTTGAGCTTGGGCTAATGGAGAAAACGGTCAGTGGGTGTTGTATGCTGGGCTCCAAGATATTGTGTTTGGTATTAGTACTGCTTTTAATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCNGCAATTTATCTAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14064#0 CCCGGCGGACAACCACCTCCTCGCCTGCGGCGCGACGGCACCGGCCGTGCTCCCCGACGG 60 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CCGACGCTTCGTCCCCGACTCCGGCTGCGCCTCCACGCGCCTCCGCTCCCCGGCACCTAC 120 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CCTCCCGTCCGCGGCCTCCAGCGCGGCCCCGCAGCCGACCCCTCTCCACGCCGCCGCGCG 180 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 GGTCTTCTCCTGCCGCGCGTCCTACGACCTCGCCGTCCGCCGCCGCGGGTACCACGTCCT 240 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 GCGCCTCCACTTCTACCCCTTCGAGCCCGCGCTCGCGTCCGCGCGCTTCCACGTCGGCGC 300 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CGCCGGATTCCTCCTCCTCCACAACTTCTCCGCGTCGGCCCCCGTCGTGAAGGAGTTCAT 360 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CCTACCCGTCCACTCCGACGTCCTCGTCCTCACCTTCGTCCCCGAGTCGGGCTCTAACGC 420 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CTTCGTCAACGCCATCGAGCTCGTCTCGGCCCCCGATGAGCTCGTCGGCGACATCGGCAC 480 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CCTCGTCACGAGCAGCGGCACTGACCAGACCAATGGATTGTCGTCTCAGGTCTATGAGAT 540 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 GCTCTATCGGATCAACGTCGCCGGCCGCAAGGTCACACCGTTCAACGACACGCTGTGGCG 600 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 AACATGGGTCAACGACGAGCGCTTCCTCGTCAGCACGGAATCATCCAACAGCGGGGTCTG 660 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 GTCGTTCGGTGGCCGGATTGCTTATCCCAAGGGTAGCAGATTGATGACACGGGAGGTTGC 720 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 TCCTGACAACGTGTACAACTCGGCGAGGTCAGTGAGCTCACAGGGCAAAGTGACATGGGG 780 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 ATTTCCCGTGCCTGCTTCCAGCAGGTACCTAGTGCGTATGCACTTCTGTGACATCGTGAG 840 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 CAAGGCTCTAAATGAGCTTTACTTTGATATCTATGTCAATGGTCAGCTAGCAGTAAAGGA 900 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 TTTCGATATCTCTGGTGCCACTGGATTCTTAGCCTATCCATATTACATCGACTTTGTTGT 960 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 GGATGTTGAGGATGAAGGGGCCCTGAAATTGGCCATTGGTGGCTCGAAGAATAGCCGATC 1020 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ------------------------------------------------------------ consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 AGACGAAGTGAGCGGTATTCTTAATGCTGTAGAGATAATGAGGATGAACAAAACAAATGG 1080 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ----------ATTGATGGGGATTCTTGCAGTTTCTCTGGGCATTGGAGTATTGTGGCTAT 50 consensus_14064#2 ------------------------------------------------------------ consensus_14064#0 TGGTATTGATGGGGATTTTGCAGTTTCTCTGGGCATGGAGTATGTGGCTAGCAAGGGGAT 1140 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 GTCATAGGTGGATCGGAGAATTTGCTCGCTCACTGTCATGTGTGGTTTCATTTTTGCGGG 110 consensus_14064#2 -TAGCAAGGGGATCGGAGAATTTACTCGCTCACTGC--TGTGTGGTTTCATTTTTGCGGG 57 consensus_14064#0 CGGAGAATTTACTCGCTCACTGCTGTGTGGTTTCATTTTTGCGGGATTGTTGTTGGTTTT 1200 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGCATGAGGAATAATG 170 consensus_14064#2 ATTGTTGTTGGTTTTGTTAATGCTTGTGGTGAGGTTGAGGACTGAGC-TGAGGAATAATG 116 consensus_14064#0 GTTAATGCTTGTGGTGAGGTTGAGGACTGAGCTGAGGAATAATGGTACAACTTGGTCTTG 1260 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 GTACAACTTGGTCTTGGCATGCCAAATGATTCTGGTGACAGGGAAGCATGGCTAGAGCAT 230 consensus_14064#2 GTACAACTTGGTCTTGGCA-GCCAAATGATTCTGGTGAC-GGGAAGC-TGGCTAGAGCAT 173 consensus_14064#0 GCAGCCAAATGATTCTGGTGACGGGAAGCTGGCTAGAGCATATCAACTTGTGTCCGCTAA 1320 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 ATCAAACTTGTGTGCCGCTGAAGACAAGACTGATTGGAACATGCATGGAGATGGATAATG 290 consensus_14064#2 ATCAA-CTTGTGT-CCGCT-AAGACA-GACTATT--GAACAT-CATG-AGATG-ATAAT- 223 consensus_14064#0 GACAGACTATTGAACATCATGAGATGATAATCTTTGAGGAGCTTTAAACTGTGGCTGTTG 1380 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 CTTTGGAGGAGGCTGTTGAAACTGCGGCTGGTTGGACACTGATGTGGTGATGGTGAATGA 350 consensus_14064#2 -CTTTGAGGAGC---TTTAAACTGTGGCTG--------TTGACCTATTGTATGT-AATGA 270 consensus_14064#0 ACCTATTGTATGTAATGACATATTGCATTACTTCAGTTGTAAGTATTGTAGTTTTACACT 1440 consensus_14064#3 ------------------------------------------------------------ consensus_14064#1 CATGATTGGCAATTGACTTGCAGTGTGTGAAAGTGATTGTGAGTGTTTGACACTGTTNTG 410 consensus_14064#2 CATATT--GCATT--ACTT-CAGT---TGTAAGT-ATTGTA---GTTTTACACTTTTAC- 317 consensus_14064#0 TTTACTCCCTTAATGGTAAGT---TTTCGGTTATTTGAGCTTGG-CTAATGGAGAAAACG 1496 consensus_14064#3 -------------TGGTAAGTGTGTTCGGGTTATTTGAGCTTGGGCTAATGGAGAAAACG 47 consensus_14064#1 ACTGCCCTTGAATGGGTGAGTGT-TTGCGGNTATTTGAGCTTGG-CTAATGGAGAAAACG 468 consensus_14064#2 ----TCCCTTAATGG-TAAGT---TTTCGGTTATTTGAGCTTGG-CTAATGGAGAAAACG 368 * * *** ** ** ************* *************** consensus_14064#0 GTCGT--GGTGTTGTAT-CTGG--CTCAAGATATT-TGTTTG-TATTAGTACTGCTTTTA 1549 consensus_14064#3 GTCAGTGGGTGTTGTATGCTGGGCTCCAAGATATTGTGTTTGGTATTAGTACTGCTTTTA 107 consensus_14064#1 GTCGT--GGTGTTGTAT-CTGG--CTCAAGATATT-TGTTTG-TATTAGTACTGCTTTTA 521 consensus_14064#2 GTCGT--GGTGTTGTAT-CTGG--CTCAANATATT-TGTTTG-TATTAGTACTGCTTTTA 421 *** ********** **** *** ***** ****** ***************** consensus_14064#0 ATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCTGCATTTATCTAGTTTAAAAA 1609 consensus_14064#3 ATAGCTCTATCCAGTTTGTGATGCTTGAATGAATATGCCNGCA---ATTTA-TCTAAAAA 163 consensus_14064#1 ATA-----AAAAA----------------------------------------------- 529 consensus_14064#2 ATAGCTCTAAAAAAAAAAAAAA-------------------------------------- 443 *** * * consensus_14064#0 AAAA 1613 consensus_14064#3 AA-- 165 consensus_14064#1 ---- consensus_14064#2 ---- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||