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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14084#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 9 consensus length = 1552 fasta sequence
[GTAGTGTGTAGCGTGTAGTGTGTGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTTGCTGCTCCCTCGTGCGGCTCTCCCGTGTGCGGCGGCTGGCGGCGGCGGGCCGCGGGCGCCGCACTCCACCTCGCATGTTCCGCTTCGTGCGCCTCGCTGCACGGCCACCGGCCCCCTCGTCTGTGTCCCGCCCGCTCTCCTTCAGCATCGTCGGCAAGTACCCCT-AC-GGCATG-ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC-GAGGACGTCACGCGG-GGCGTCAAC-T-TCGCCGTCG-GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA-GTTCGGG-TTCAGGCACGGGGCGC-TGAGGACGT-GCTGCGGC-GGCGGAGGGCCG-TACAACTTCAA-CCCGAAGGCGAGCTGCGGCGTGCGGGGC-TCCAGCGTGTGCACGGA-CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGTATATATATATACGTCTGGATTTCAGAACAATTAGTTTCAGAAACATACGGCGTGGCATACACCAGTCAAA]
[+] EMBL CB965697 [GTAGTGTGTAGCGTGTAGTGTGTGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTTGCTGCTCCCTCGTGCGGCTCTCCCGTGTGCGGCGGCTGGCGGCGGCGGGCCGCGGGCGCCGCACTCCACCTCGCATGTTCCGCTTCGTGCGCCTCGCTGCACGGCCACCGGCCCCCTCGTCTGTGTCCCGCCCGCTCTCCTTCAGCATCGTCGGCAAGTACCCCTCACTGGCATGCACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGACGATGCTGCAGCCGTACCTGTCGCGCGGCAGAGGACGTCCCGCGGAGGCGTCAACATATCGCCGACGAGCGGCGCGAAGG ]
[+] EMBL C74787 [ caGCCCGCTCNCCTTCAGCATCNTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAANGTTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG G GGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCAACCAAAGATTGCA ]
[+] EMBL AK119642 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCTCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCGGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAA ]
[+] EMBL AK059088 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCGGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAG ]
[+] EMBL CB644926 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGC ]
[+] EMBL BI306183 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGA ]
[+] EMBL AK061118 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCGGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGTATATATATATACGTCTGGATTTCAGAACAATTAGTTTCAGAAACATACGGCGTGGCATACACCAGTCAAA]
[+] EMBL AK119598 [ ATCGTCGGCAAGTACCCCT AC GGCATG ACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGCCGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTGTCGCGCGGC GAGGACGTCACGCGG GGCGTCAAC T TCGCCGTCG GCGGCGCGACGGCCATGGATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTCAGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGATTGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTACAACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTCGCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCA GTTCGGG TTCAGGCACGGGGCGC TGAGGACGT GCTGCGGC GGCGGAGGGCCG TACAACTTCAA CCCGAAGGCGAGCTGCGGCGTGCAGGGC TCCAGCGTGTGCACGGA CCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGG TATATATATACGTCTGG ]
[+] EMBL AU030833 [ ctCAGAACCCCAAGCANGTTCGGGTTTCAGGCACGGGGCGCTTGAGGACGTGGCTGCGGCTGNCGGAGGGCCGTTACAACTTCAACCCCGAAGGCGAGNTGCGGCGTGCGGGGCTTCCAGCGTGTGCACGGACCCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACANCTGCACAAAaaaa ]
consensusID : consensus_14084#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 728 fasta sequence
[CGCCGGCGCGGTCGCCGACGCCACCGAAAGGGTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTCGGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAACCCGAAGGCGAGCTGCGGCGTGCGGGGCTCCAGCGTGTGCACGGACCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGAGGCATCAGCTTTGGGCGTGACTGTGTCCGTGCTAAAAAAAAAGA]
[-] EMBL CB644927 [CGCCGGCGCGGTCGCCGACGCCACCGAAAGGGTGATCAAGGCAGGGGCGGTGCACCTGGTGGTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGCAACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCACCACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGGATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTCGGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAACCCGAAGGCGAGCTGCGGCGTGCGGGGCTCCAGCGTGTGCACGGACCCGTCGGCGTACGCCAACTGGGACGGCGTCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAGTGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGTGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGAGGCATCAGCTTTGGGCGTGACTGTGTCCGTGCTAAAAAAAAAGA]
consensusID : consensus_14084#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 450 fasta sequence
[GCGGAGGGCCGTACAACTTCAACCCGAAGGCGANCTGCGGCGTGCGGGGCTCCCAGCGTNTGCACGGACCCNTACGGCGTACGCCAACTGGGACGGCGTCCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTG-ACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCT-GCTGCTGCTGCACTCTGCAA-TGTAAACTGATCTGTAATGTAGTGATATGA-GCTA-GTGGTGGTTTTGAGTTTT-GACAGTGT-GTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCT-GTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATNGTNCTCA--AAAA----AAAAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU075812 [GCGGAGGGCCGTACAACTTCAACCCGAAGGCGANCTGCGGCGTGCGGGGCTCCCAGCGTNTGCACGGACCCNTACGGCGTACGCCAACTGGGACGGCGTCCCACCTGACGGAGGCCGGCTACCACGCCATCGCCAACAGCATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTG ACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCT GCTGCTGCTGCACTCTGCAA TGTAAACTGATCTGTAATGTAGTGATATGA GCTA GTGGTGGTTTTGAGTTTT GACAGTGT GTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCT GTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATNGTNCTCA AAAA AAAAAAAAAAAA ]
[+] EMBL AU077892 [ GCTCTGNACCATCCCCCGTTCTCTCGACCTGGTGTTAGCTGCTGCTNGCTGCTGCTGCACTCTGCAACTGTAAACTGATCTGTAATGTAGTGATATGACGCTACGTGGTGGTTTTGAGTTTTCGACAGTGTNGTGGGCTTTGGCTACTTGAGTCTCCAGGCACAGTACAGTATGTCTCGTCGAGTGTCATCAGCTTTGGGCGTGACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGCACAAAAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14084#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 394 fasta sequence
[ACCGGAGTCGGGACGAACGCTCGTCGCGCGCTGCGCGCACGCACCTACCCCAGATTTGCCCTCGGCATTTACGCCCTCACCTACAATCTCAAGCGAGCCCGATTAATGCCCTCTTTATAGTCCCACCATTGCCGAGCTCATCCCAATGCAGAAACCATCCAGCGTGTAGTGTGTAGC-GTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACACCGGCAACCTCGTCGTGTCCAGCCCGATCTCCTTCAGCA]
[+] EMBL AU172992 [ACCGGAGTCGGGACGAACGCTCGTCGCGCGCTGCGCGCACGCACCTACCCCAGATTTGCCCTCGGCATTTACGCCCTCACCTACAATCTCAAGCGAGCCCGATTAATGCCCTCTTTATAGTCCCACCATTGCCGAGCTCATCCCAATGCAGAAACCATCCAGCGTGTAGTGTGTAGCAGTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACAC ]
[+] EMBL OSS2765A [ TGTAGTGTGTAGC GTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTNGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGNGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACACCGGCAACCTCGTCGTGTCCAGCCCGATCTCCTTCAGCA]
[+] EMBL AU075811 [ GTAGC GTGTAGTGTGTCGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTCTGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAGAACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACAC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 GTAGTGTGTAGCGTGTAGTGTGTGTCACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGG 60
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 TCTCGGTGTTCGTCGCCGCGTTGGTCTTGCTGCTCCCTCGTGCGGCTCTCCCGTGTGCGG 120
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 CGGCTGGCGGCGGCGGGCCGCGGGCGCCGCACTCCACCTCGCATGTTCCGCTTCGTGCGC 180
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 CTCGCTGCACGGCCACCGGCCCCCTCGTCTGTGTCCCGCCCGCTCTCCTTCAGCATCGTC 240
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 GGCAAGTACCCCTACGGCATGACATACTTCCACCGCCCCACCGGCCGCTGCTCCGACGGC 300
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 CGCCTCGTCGTCGACTTCCTCGCGCAAGCGTTCGGGCTGCCGCTGCTGCAGCCGTACCTG 360
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 TCGCGCGGCGAGGACGTCACGCGGGGCGTCAACTTCGCCGTCGGCGGCGCGACGGCCATG 420
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 GATCCGCCGTTCTTCGAGGAGATCGGCGCGTCCGACAAGCTCTGGACCAACCTGTCGCTC 480
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 AGCGTCCAGCTCGGCTGGTTCGAGCAGCTCAAGCCCTCACTCTGCAGCTCACCCAAAGAT 540
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 TGCAAGGAGTTCTTCAGCAAGTCACTCTTCCTCGTCGGGGAGATTGGGGGAAACGACTAC 600
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 -----------------------------------------------------------C 1
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 AACTACGCCTTCTTCAAGGGCAAGAGCTTGGACGACGCCAAATCCTACGTCCCCACCGTC 660
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 GCCGGCGCGGTCGCCGACGCCACCGAAAGGGTGATCAAGGCAGGGGCGGTGCACCTGGTG 61
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 GCCGGCGCCGTCGCCGACGCCACCGAAAGGCTGATCAAGGCAGGGGCGGTGCACCTGGTG 720
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 GTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGC 121
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 GTGCCCGGGAACCTGCCGATCGGCTGCTCGTCAGCGTACCTGACGCTGCACCCGAGCAGC 780
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 AACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCAC 181
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 AACAGGAGCGACTACGACTCCACCGGCTGCCTCAAGACGTACAACGACTTCGCCCAGCAC 840
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 CACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGG 241
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 CACAACGCCGTGCTCCAGGACAAGCTCCGGCTGCTTCGCCGGAGCTACCCGGAGGCCAGG 900
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTC 301
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 ATCATGTACGCCGACTACTACGGCGCCGCCATGTCCTTCGCCCAGAACCCCAAGCAGTTC 960
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 GGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAAC 361
consensus_14084#2 -------------------------------------GCGGAGGGCCGTACAACTTCAAC 23
consensus_14084#0 GGGTTCAGGCACGGGGCGCTGAGGACGTGCTGCGGCGGCGGAGGGCCGTACAACTTCAAC 1020
consensus_14084#3 -------------------------------------ACCGGAGTCGGGACGA----ACG 19
* * * * * ** * *
consensus_14084#1 CCGAAGGCGAGCTGCG-GCGTGCGGGGCTCC-AGCGTGTGCACGGACCCGT-CGGCGTAC 418
consensus_14084#2 CCGAAGGCGANCTGCG-GCGTGCGGGGCTCCCAGCGTNTGCACGGACCCNTACGGCGTAC 82
consensus_14084#0 CCGAAGGCGAGCTGCG-GCGTGCGGGGCTCC-AGCGTGTGCACGGACCCGT-CGGCGTAC 1077
consensus_14084#3 CTCGTCGCGCGCTGCGCGCACGCACCTACCCCAGATTTGCCCTCGGCATTTACGCCCTCA 79
* *** ***** ** ** ** ** * * * * * ** * *
consensus_14084#1 GC--CAACTGGGACGGCGTCC-ACCTGACGGAGGCCGGCTA-CCACGCCATCGCCAACAG 474
consensus_14084#2 GC--CAACTGGGACGGCGTCCCACCTGACGGAGGCCGGCTA-CCACGCCATCGCCAACAG 139
consensus_14084#0 GC--CAACTGGGACGGCGTCC-ACCTGACGGAGGCCGGCTA-CCACGCCATCGCCAACAG 1133
consensus_14084#3 CCTACAATCTCAAGCGAGCCC-GATTAATGCCCTCTTTATAGTCCCACCATTGCCGAGCT 138
* *** * * * ** * * * * ** * * **** *** *
consensus_14084#1 CATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGAC 534
consensus_14084#2 CATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGAC 199
consensus_14084#0 CATCCTCAATGGCCCTTACACCAGCCCAAGGCTGCTCTGACCATCCCCCGTTCTCTCGAC 1193
consensus_14084#3 CATCC-CAATG---CAGAAACCATCC--AGCGTGTAGTGTGTAGCGTGTAGTGTGTCGTC 192
***** ***** * * **** ** ** ** ** * * * * *** *
consensus_14084#1 CTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAG 594
consensus_14084#2 CTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAG 259
consensus_14084#0 CTGGTGTTAGCTGCTGCTGCTGCTGCTGCACTCTGCAATGTAAACTGATCTGTAATGTAG 1253
consensus_14084#3 ACGATGTCGCGCGCCATGGCGGCCTCCAGGCGGGTCTCGGTGTTCGTCGCCGCGTTGGTC 252
* *** ** ** ** * * * ** * * * **
consensus_14084#1 TGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGT-----GTGGGCTTTGGCTAC-- 647
consensus_14084#2 TGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGT-----GTGGGCTTTGGCTAC-- 312
consensus_14084#0 TGATATGAGCTAGTGGTGGTTTTGAGTTTTGACAGTGT-----GTGGGCTTTGGCTAC-- 1306
consensus_14084#3 TGCTGCTCACTCGTGCGGCTCTCCCGGTGCGGCGGCGGCGGCGGCGGGCAGAGGGCGCAG 312
** * ** *** * * * * * * * * * * **** ** *
consensus_14084#1 --TTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGAGGCATCAGC--TTTGGGCGTG 703
consensus_14084#2 --TTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGC--TTTGGGCGTG 368
consensus_14084#0 --TTGAGTCTCCAGGCACAGTACAGTATGTCTGTCGAGTGTCATCAGC--TTTGGGCGTG 1362
consensus_14084#3 AACTACACCTCGATGTTCAGCTTCGGCGACTCGCTGACGGACACCGGCAACCTCGTCGTG 372
* *** * * *** * * ** * ** * ** * * ****
consensus_14084#1 ACTGTGTCCGTGCTAAAAAAAAAGA----------------------------------- 728
consensus_14084#2 ACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATNGTNCTCAAAAAAAAAAA 428
consensus_14084#0 ACTGTGTCCGTGCTACTTTTGACTTTGCAAGTACTGAATTATAGTACTCAGCACAACTGC 1422
consensus_14084#3 TCCA-GCCCGATCTCCTTCAGCA------------------------------------- 394
* * *** **
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 AAAAAAAAAAAAAAAAAAAAAA-------------------------------------- 450
consensus_14084#0 ACAAACCTTTCTTTCATGTGTTACGTCTGGATTTCACGAGACGAGTTGAAATCAGGCGGT 1482
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ------------------------------------------------------------
consensus_14084#2 ------------------------------------------------------------
consensus_14084#0 ATATATATATACGTCTGGATTTCAGAACAATTAGTTTCAGAAACATACGGCGTGGCATAC 1542
consensus_14084#3 ------------------------------------------------------------
consensus_14084#1 ----------
consensus_14084#2 ----------
consensus_14084#0 ACCAGTCAAA 1552
consensus_14084#3 ----------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||