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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14088#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 13 consensus length = 1585 fasta sequence
[GAGCTTTTCCTCCCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT-TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT-GAAGAT-ATACCCAATACTGC-AGAAGG-TCTTTCTTG-AAAGGA-TTTTGAGGAAA-CCAGAAA-TTG-AAGCATTTGCA-GAGGAGCTGAGACC-GCATC-AAAAAGCTCTGTTACCAGATAAGTCTACT-GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA-GCTTTGATGAGCTTGGAGCA-TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA-TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG-CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA-TTTTGTACAGATGTTCGCAG-CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATCGTGATAGCATTTTATGCCTTGTTTTAAAAAAAAG]
[+] EMBL AK071413 [GAGCTTTTCCTCCCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAGAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGA ]
[+] EMBL CB681616 [ CCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATNGAAATGCTTTGG ]
[+] EMBL C28660 [ CCAAAACCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTNCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCG CATGGACAACGCNCTCGCNAGCNCCGCGTCGATCG CGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTNCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAG GCTNTCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCA NTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGtnag ]
[+] EMBL AK104905 [ CCCTAGGCCCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAAGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAGAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGC GGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGCTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAAT ]
[+] EMBL CB657541 [ CCCCCTTCTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGNCAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTG ]
[+] EMBL CB668759 [ CGGCTCCTGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGGCGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGAAGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGANAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTG ]
[+] EMBL CB683451 [ AGCACTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCTCGCAGGCGAAGCGCT TCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGCGGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGGAGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGGTGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAGCTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAAACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTAATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTCTGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGGAAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG ]
[-] EMBL CB657542 [ ACGCCAAATTGGTGACGAAGAGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATCGTGAT ]
[-] EMBL CB668760 [ AAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATCGTGATAGCATTTTATGCCTTGTTTTAAAAAAAAG]
[-] EMBL CB681617 [ AAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGAT ]
[-] EMBL CB683836 [ GCACAATATTGGCTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCTCAAAGTT GAAGAT ATACCCAATACTGC AGAAGG TCTTTCTTG AAAGGA TTTTGAGGAAA CCAGAAA TTG AAGCATTTGCA GAGGAGCTGAGACC GCATC AAAAAGCTCTGTTACCAGATAAGTCTACT GTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAATTGATC ]
[+] EMBL AU161372 [ AAGTTNAAAGATAATNCCCAATACTGCAANAAGGTTCTTTCTTGAAAAGGATTTTTGAGGAAACCCAGAAATTTGAAAGCATTTGCANAAGGGGTNAAGACCGGCATCAAAAAAGCTCTGTTACCAGATAAGTNTACTGGTGCTTGACCGGGCAATGATTGAGCATAACCTCCTTAGTGCCAGTAAACTTTACACTAATATCA GCTTTGATGAGCTTGGAGCA TTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTNAAGCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCAGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACA TTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTG CTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACA TTTTGTACAGATGTTCGCAG CTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAAACCAAAAaa ]
[+] EMBL BI811252 [ ACACTAATATCACGCTTTGATGAGCTTGGAGCACTTATTGGGCATTGACCCTAGGAAGGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAACCTGTGATACATTTTGAGGATGACACTGAAGAGCTGCAGCCGTGGGACCAACAGATTGCGGGACTGTGCCAAGCGCTGAACGACACTTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACACTTTTGTACAGATGTTCGCAGCCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCCCCGTAATGGCATTATATCACAAACC AAATTGATCGTGATAGCCTTTTATGCCTaaaaaaa ]
consensusID : consensus_14088#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence
[TGCTTGACCGGCATGATTGAAGCATAACCTCCTTAGTGCCAGTAAACTTTTACACTAATATCAGCTTTGATGAGCTTGGACATTATTGGGCATTGACCCTAGGAAGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACACTTTTGAGGATGACCTGAAGAGCTGCAGCAGTGGGACCACAGATTGCGGGACTGTGCCAAGCGCTGAACGACATTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACATTTTGTACAGATGTTCGCAGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAACCAAATTGATCGTGATAGCATTTTATGCCTTGTTTTCTTCTGGTAAAAA]
[+] EMBL BI808666 [TGCTTGACCGGCATGATTGAAGCATAACCTCCTTAGTGCCAGTAAACTTTTACACTAATATCAGCTTTGATGAGCTTGGACATTATTGGGCATTGACCCTAGGAAGCTGAAAAGATAGCATCGCGAATGATTTATGAAGATAGGATGCGAGGTTCAATTGATCAGGTTGAAGCTGTGATACACTTTTGAGGATGACCTGAAGAGCTGCAGCAGTGGGACCACAGATTGCGGGACTGTGCCAAGCGCTGAACGACATTCTGGACAGCATGTCAAGCAAGGGAATGGCTATTCCTGTGTGAGCTCTTCAAGTTGCTTCGATGGTACTCGTGAGAACTGTGGTCACGGCGTCAGGCCTCACGGACATTTTGTACAGATGTTCGCAGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACATTAGTCGGTGATCGGTACATGTGAAGTTGTGAACTGCTGGATAGATTAAGGCAGTGGCGCCGTAATGGCATTATATCACAACCAAATTGATCGTGATAGCATTTTATGCCTTGTTTTCTTCTGGTAAAAA]
consensusID : consensus_14088#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence
[GAAGGCTGTCAGAAGANTAGCATTCCCGAAAGTGATTTAGTGAAAGATTAGGGATCCGAGGTTCAANTGATCAGGTTGAAGCTGTGATACATTTTGAGGANGACACCTGAAGAGCTGCAGCAGTGGGACCCACAGATTGNCGGGACTGTGGCACACAGCGCCTGAGACGACACTTTCTGGACAGCATGTCAAGCCAAGGGAATGGCTATTCCTGTGGTGAGCTTNTTCAAGTTGCTTCGATGGTACTCCGTGAGAACTTGTGGTCACGGCGGTCAGGCCTCCACGGACATTTTGTACANATGTTTCGCACGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGGTACCATGTGAAGTTGTGAACTGCCTGGATAGATTAAGGCCAGTGGCCCCGTAATGGCATTATATCACAAACCCCAAATTGATCGNGATAGCATTTTATCCCTTGTTTTNTGTNTGGTAAAAAAAAAA]
[+] EMBL BQ909018 [GAAGGCTGTCAGAAGANTAGCATTCCCGAAAGTGATTTAGTGAAAGATTAGGGATCCGAGGTTCAANTGATCAGGTTGAAGCTGTGATACATTTTGAGGANGACACCTGAAGAGCTGCAGCAGTGGGACCCACAGATTGNCGGGACTGTGGCACACAGCGCCTGAGACGACACTTTCTGGACAGCATGTCAAGCCAAGGGAATGGCTATTCCTGTGGTGAGCTTNTTCAAGTTGCTTCGATGGTACTCCGTGAGAACTTGTGGTCACGGCGGTCAGGCCTCCACGGACATTTTGTACANATGTTTCGCACGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGGTACCATGTGAAGTTGTGAACTGCCTGGATAGATTAAGGCCAGTGGCCCCGTAATGGCATTATATCACAAACCCCAAATTGATCGNGATAGCATTTTATCCCTTGTTTTNTGTNTGGTAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14088#0 GAGCTTTTCCTCCCATCTTCCCCGCAGATCAAACGCCCCCCAAAACCCTAGGCCCCCCTT 60
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CTCCTCCGACGCCGGCTACAGTCTCCGACCCCTCCGGCGCAATCGCGGAATCGGAGGCGG 120
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CGGGCGGCGCCATGGACAACGCCCTCGCGAGCGCCGCGGCGATCGCCGACCAGCGCCAGA 180
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 AGATCGAGCAGTACCGCCACATCCTCTCCTCCGTCCTCTCGTTTTCCCCGCCGGACATCT 240
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CGCAGGCGAAGCGCTTCCTCGACCACATGGTTTCCGACGAGGTGCCGCTCGTGGTGTCGC 300
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 GGCAGCTGCTGCAGACGTTCGCCCAGGAGCTTGGGAGGTTGGAGCCAGAGGCTCAGAAGG 360
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 AGGTCGCGCACTACGCGCTCACGCAGATCCAGCCTCGTGTGGTCTCCTTCGAGGAGCAGG 420
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 TGGTAGTGATTAGAGAGAAGCTTGCAGAACTGTATGAGTCTGAACAACAATGGTCAAAAG 480
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CTGCACAGATGCTTAGTGGGATTGACTTGGACTCAGGGATCAGGATGCTGGATGACACAA 540
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 ACAAATTATCCAAATGTGTCCAGATTGCACGACTTTATTTAGAGGATGATGATTCTGTTA 600
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 ATGCTGAAGCTTTTATTAACAAAGCTTCATTTTTGGTAACAAACAGTCACCAAGAACTTC 660
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 TGAACTTACAGTACAAGGTATGCTACGCTAGAATTTTGGATCTGAAGAGAAGATTCTTGG 720
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 AAGCTGCACTTCGATACTATGACATCTCTCAGATTGAACAACGCCAAATTGGTGACGAAG 780
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 AGATCGATGAAAATGCTTTGGAGCAAGCTCTTAGTGCTGCTGTGACATGCACAATATTGG 840
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CTGGTGCTGGTCCGCAACGATCTCGTGTTCTTGCTACATTGTACAAGGATGAGAGATGCT 900
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CAAAGTTGAAGATATACCCAATACTGCAGAAGGTCTTTCTTGAAAGGATTTTGAGGAAAC 960
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 CAGAAATTGAAGCATTTGCAGAGGAGCTGAGACCGCATCAAAAAGCTCTGTTACCAGATA 1020
consensus_14088#1 ------------------------------------------------------------
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 AGTCTACTGTGCTTGACCGGGCAATGATTGA-GCATAACCTCCTTAGTGCCAGTAAACTT 1079
consensus_14088#1 ---------TGCTTGACCGG--CATGATTGAAGCATAACCTCCTTAGTGCCAGTAAACTT 49
consensus_14088#2 ------------------------------------------------------------
consensus_14088#0 T-ACACTAATATCAGCTTTGATGAGCTTGGAGCATTATTGGGCATTGACCCTAGGAAGGC 1138
consensus_14088#1 TTACACTAATATCAGCTTTGATGAGCTTGGA-CATTATTGGGCATTGACCCTAGGAAG-C 107
consensus_14088#2 ---------------------------------------------------GAAGGCTGT 9
* *
consensus_14088#0 TGAAAAGATAGCAT---CGCGAATGATTTAT--GAAGAT--AGGATGCGAGGTTCAATTG 1191
consensus_14088#1 TGAAAAGATAGCAT---CGCGAATGATTTAT--GAAGAT--AGGATGCGAGGTTCAATTG 160
consensus_14088#2 CAGAAGANTAGCATTCCCGAAAGTGATTTAGTGAAAGATTAGGGATCCGAGGTTCAANTG 69
** ****** ** * ******* ***** **** ********** **
consensus_14088#0 ATCAGGTTGAAGCTGTGATACA-TTTTGAGGATGACA-CTGAAGAGCTGCAGCAGTGGGA 1249
consensus_14088#1 ATCAGGTTGAAGCTGTGATACACTTTTGAGGATGAC--CTGAAGAGCTGCAGCAGTGGGA 218
consensus_14088#2 ATCAGGTTGAAGCTGTGATACA-TTTTGAGGANGACACCTGAAGAGCTGCAGCAGTGGGA 128
********************** ********* *** **********************
consensus_14088#0 CCAACAGATTGC-GGGACTGTGCCA---AGCGCT--GAACGACA--TTCTGGACAGCATG 1301
consensus_14088#1 CCA-CAGATTGC-GGGACTGTGCCA---AGCGCT--GAACGACA--TTCTGGACAGCATG 269
consensus_14088#2 CCCACAGATTGNCGGGACTGTGGCACACAGCGCCTGAGACGACACTTTCTGGACAGCATG 188
** ******* ********* ** ***** ****** **************
consensus_14088#0 TCAAGC-AAGGGAATGGCTATTCCTGTG-TGAGCT-CTTCAAGTTGCTTCGATGGTACTC 1358
consensus_14088#1 TCAAGC-AAGGGAATGGCTATTCCTGTG-TGAGCT-CTTCAAGTTGCTTCGATGGTACTC 326
consensus_14088#2 TCAAGCCAAGGGAATGGCTATTCCTGTGGTGAGCTTNTTCAAGTTGCTTCGATGGTACTC 248
****** ********************* ****** ***********************
consensus_14088#0 -GTGAGAACT-GTGGTCACGGCG-TCAGGCCTC-ACGGACATTTTGTACAGATGTT-CGC 1413
consensus_14088#1 -GTGAGAACT-GTGGTCACGGCG-TCAGGCCTC-ACGGACATTTTGTACAGATGTT-CGC 381
consensus_14088#2 CGTGAGAACTTGTGGTCACGGCGGTCAGGCCTCCACGGACATTTTGTACANATGTTTCGC 308
********* ************ ********* **************** ***** ***
consensus_14088#0 A-GCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGCCACAATTAGTCGGTGATCGG 1472
consensus_14088#1 A-GCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACA-TTAGTCGGTGATCGG 439
consensus_14088#2 ACGCTGCGAGTACCAGTCATGTTTCGGAACGAATTTTGGGCACAATTAGTCGGTGATCGG 368
* ************************************* **** ***************
consensus_14088#0 TAC-ATGTGAAGTTGTGAACTGC-TGGATAGATTAAGGC-AGTGGCGCCGTAATGGCATT 1529
consensus_14088#1 TAC-ATGTGAAGTTGTGAACTGC-TGGATAGATTAAGGC-AGTGGCGCCGTAATGGCATT 496
consensus_14088#2 TACCATGTGAAGTTGTGAACTGCCTGGATAGATTAAGGCCAGTGGCCCCGTAATGGCATT 428
*** ******************* *************** ****** *************
consensus_14088#0 ATATCACAAAC-CAAAATTGATCGTGATAGCATTTTATGCCTTGTTTT------AAAAAA 1582
consensus_14088#1 ATATCACAA---CCAAATTGATCGTGATAGCATTTTATGCCTTGTTTTCT-TCTGGTAAA 552
consensus_14088#2 ATATCACAAACCCCAAATTGATCGNGATAGCATTTTATCCCTTGTTTTNTGTNTGGTAAA 488
********* * ********** ************* ********* ***
consensus_14088#0 AAG---- 1585
consensus_14088#1 AA----- 554
consensus_14088#2 AAAAAAA 495
**
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||