These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14094#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1480 fasta sequence [AAACTCAGACATGGCGGCCACCGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCTCCTCCTCCACGTCCCTTCTCCTCGCCGCCTCCCTCTCCCGCGGCGCCACCCCACTGCCCCTCCTGCGGCGCGATGTCTCCGCGGCGTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGACGACGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGG-GAGGGCGAC---GAGGAGG-AGG-GGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAA-GGGTTCTTGCTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAG-CC-GCCTGTTGAGCATTT-GCGT-GATCCCCT-ATACAAGACAGAAAGGGAGATCATG-AAGGTTTTCTTAACAAAACA-TTACAGGAATAGGCGGTGT-AACGACCCAGATTTTTTCCTT-GATTTTGAAGAGATATAT-GTTATTGACTCAAAAGCAAGGTCAATCACGAG-AGC-AAAAGTTGTGGTTAGT-GTCCCTG-AAGG-AAAGAA-GAGGGACA--GGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAA-TCGACAAGACCAAAAGGGATGATGCGACCACTGTGA-TCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCAAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACTTAGCGAGCCTATCTGTAGAAAACTGAAATGTTTGATGCTTGTGAATGCACTACCTTGTTGAGTAGCCAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCTATACTTGGATTCAGAATTTCCTAGGTAAGCTTTCCCTCCGGTTTTTTATGTATGAATTTCGTAGGCAAGTCCTGTACTCGGCAGAATCCTCAATATAATCTACAAAGTGGCAGACAGCAGACAATTATGTCAGTAAAAAAA] [+] EMBL CF333680 [AAACTCAGACATGGCGGCCACCGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCTCCTCCTCCACGTCCCTTCTCCTCGCCGCCTCCCTCTCCCGCGGCGCCACCCCACTGCCCCTCCCGCGGCGCGATGTCTCCGCGGCGTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGACGACGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGGNGAGGGCGAC GAGGAGGAAGGNGGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGGTTCTTGCT ] [+] EMBL CF310395 [ GACATGGCGGCCACCGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCTCCTCCTCCACGTCCCTTCTCCTCGCCGCCTCCCTCTCCCGCGGCGCCACCCCACTGCCCCTCCTGCGGCGCGATGTCTCCGCGGCGTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGACGACGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGG GAGGGCGAC GAGGAGG AGG GGGACATCGTCATGGTCGCCGCCCAGAGCTTCGTCTCC ] [+] EMBL CF276041 [ CGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCTCCTCCTCCACGTCCCTTCTCCTCGCCGCCTCCCTCTCCCGCGGCGCCACCCCACTGCCCCTCCTGCGGCGCGATGTCTCCGCGGCGTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGACGACGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGG GAGGGCGAC GAGGAGG AGG GGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTT ] [+] EMBL CB661943 [ CGACTCCGCCTCCGGGTTCCCCTATCCATTCGCCTCGCCGCTCTCCAAAACCCTAGCTAAGCCCTCCTCCTCCACGTCCCTTCTCCTCGCCGCCTCCCTCTCCCGCGGCGCCACCCCACTGCGCCTCCTGCGGGGCGATGTCTCCGCGGCGTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGAGGACGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGG GAGGGCGAC GAGGAGG AGG GGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCA GCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGCGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAA GGGTGCTTGCTCCGATGCCGCAAAAGTGTGTGAGGCGCATGAAGAAAAATTTTGGTCGATACCACGTTGGTGAG CC GCCTGTTGAGCATAT GCGT GATCCCCT ATACCAGACAGAAAGGGAGATC ] [+] EMBL AK102323 [ CCAAAACCCTAGCTAACCCCTCCTCCTCCAGGTCCCTTCTCCTCGCCGCCCCCCTCTCCCGCGGCGCCACCCCACTGCCCCTCCTGCGGCGCGATGTCTCCGCGGCCTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGACGACGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCGCTGTCGGGG GAGGGCGACGAGGAGGAGG AGG GGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGATTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTATTCCATCCCAA GGGTTCTTGCTCCGATGCCGCAAAAGTATTTGAGGTGCACGAAGAAAAATTTTGGTCGTTACCATGTTAGTGAG CC GCCTGTTGAGCATTT GCGT GATCCCCT ATACAAGACAGAAAGGGAGATCATG AAGGTTTTCTTAACAAAACA TTACAGGAATAGGCGGTGT AACGACCCAGATTTTTTCCTT GATTTTGAAGAGATATAT GTTATTGACTCAAAAGCAAGGTCAATCACGAG AGC AAAAGTTGTGGTTAGT GTCCCTG AAGG AAAGAA GAGGGACA GGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAA TCGACAAGACCAAAAGGGATGATGCGACCACTGTGA TCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCAAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACTTAGCGAGCCTATCTGTAGAAAACTGAAATGTTTGATGCTTGTGAATGCACTACCTTGTTGAGTAGCCAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCTATACTTGGATTCA ] [+] EMBL OSR22532A [ GACTACGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCG CCACTGTCCGGG GAGGGCGAC GAGGAGG AGG GGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAA GGGTTCTTGCTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGNCCGGCCTGTTGAGCATTTGGCGTGGATCCCCTAATACAAGACAGAAAGGGAGATCATGAAAGGTTTTCTTAACAAAACATTTACAGGAATAGGCGGTGTAAAGGACCCAGATTTTTTCCTTGGATTTTGAAGAGATATATGGTTATTGACTCGAAAGCAAGGTCAATCACGAGAAGCAAAAAGTTGTGGTTAGTGGTCCCTGNAAGGAAAAGAANGAGGGACAAGGGAGAAATGANTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTTGACAAGACCAAAAGGGATGATGCGACCACTGTGATTCCAAAGAGAGGAG ] [+] EMBL CA753132 [ GACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGATTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTATTCCATCCCAA GGGTTCTTGCTCCGATGCCGCAAAAGTATTTGAGGTGCACGAAGAAAAATTTTGGTCGTTACCATGTTAGTGAG CC GCCTGTTGAGCATTT GCGT GATCCCCT ATACAAGACAGAAAGGGAGATCATG AAGGTTTTCTTAACAAAACA TTACAGGAATAGGCGGTGT AACGACCCAGATTTTTTCCTT GATTTTGAAGAGATATAT GTTATTGACTCAAAAGCAAGGTCAATCACGAG AGC AAAAGTTGTGGTTAGT GTCCCTG AAGG AAAGAA GAGGGACA GGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATNCAGAATAA TCGACCAGACCCAAAGGGATGATGCGACCACTGTGA TCC NAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAG AGCCCCTTAGGAAGCT CGCGA ] [+] EMBL AU090505 [ TAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCTATACTTGGATTCAGAATTTCCTAGGTAAGCTTTCCCTCCGGTTTTTTATGTATGAATTTCGTAGGCAAGTCCTGTACTCGGCAGAATCCTCAATATAATCTACAAAGTGGCAGACAGCAGACAATTATGTCAGTAAAAAAA] consensusID : consensus_14094#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1169 fasta sequence [TCAGACATGGCGGCCACCGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGGGAGGGCGACGAGGAGGAGGGGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACC-ACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATTTAGGCTTGGATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA] [+] EMBL AK060105 [TCAGACATGGCGGCCACCGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGGGAGGGCGACGAGGAGGAGGGGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGCCTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACTGCACTGCGACTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACC ACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACG ] [-] EMBL CB659150 [ TGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAAAATTTTGGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACC ACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGAAGGTTGGATTCAGAATGCACGTGT ] [-] EMBL CB659158 [ GGTCGTTACCACGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACC CCTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTTTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATTTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATTTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTCCCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATTTAGGCTTGGATTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGA] [-] EMBL CF276040 [ ATATGTTATTGACTCGAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACCNACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTGGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTAaaaaaaa ] consensusID : consensus_14094#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 829 fasta sequence [GCATTCAGAACATAAGTACATAACCATTATATATTTAGGTTGCAGGAGCTCTTTCATCACTAATGTTAGTAGAAAAAAGTATATTAGTATCTGCATGATGATTTGAAGGAACTAGTTTAACGATTTCCATCCTTTGAAATATTGCATGCGACCATTTGGATGACTGGTAAACTGGGTCTGTGATGTCATTGGTTTCACAGTTAGTCCTATGCCTTTTCATCTAGACATTTGTGACAAACATTTATATTCACATTTTTTTTGCATAGTTAAGTTAGTTAATTTTTGTTTTGTTGAGATTATCAATATCGAGCTGCTTATTACAGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACCACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCTATACT] [-] EMBL CB661944 [GCATTCAGAACATAAGTACATAACCATTATATATTTAGGTTGCAGGAGCTCTTTCATCACTAATGTTAGTAGAAAAAAGTATATTAGTATCTGCATGATGATTTGAAGGAACTAGTTTAACGATTTCCATCCTTTGAAATATTGCATGCGACCATTTGGATGACTGGTAAACTGGGTCTGTGATGTCATTGGTTTCACAGTTAGTCCTATGCCTTTTCATCTAGACATTTGTGACAAACATTTATATTCACATTTTTTTTGCATAGTTAAGTTAGTTAATTTTTGTTTTGTTGAGATTATCAATATCGAGCTGCTTATTACAGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCGACCACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCTATACT] consensusID : consensus_14094#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 410 fasta sequence [TGTCGTACCNCCTGTGTATCCCTAAGAGTAGGTAGTGGGCTAATAGTCGAGGCCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCAAAA] [+] EMBL BQ907639 [TGTCGTACCNCCTGTGTATCCCTAAGAGTAGGTAGTGGGCTAATAGTCGAGGCCAAGATGTGGAGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCAAAA] consensusID : consensus_14094#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [CCTACTGCACTGCGATTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTATTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGTATTTGAGGTGCACGAAGAAAAATTTTGGTCGTTACCATGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGCCTATTACNNNNTA] [+] EMBL CF197386 [CCTACTGCACTGCGATTTTTTTATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACTTCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTATTCCATCCCAAGGGTTCTTGCTCCGATGCCGCAAAAGTATTTGAGGTGCACGAAGAAAAATTTTGGTCGTTACCATGTTAGTGAGCCGCCTGTTGAGCATTTGCGTGATCCCCTATACAAGACAGAAAGGGAGATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACGACCCAGATTTTTTCCTTGATTTTGAAGAGATATATGTTATTGACTCAAAAGCAAGGTCAATCACGAGAGCAAAAGTTGTGCCTATTACNNNNTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14094#0 AAACTCAGACATGGCGGCCACCGTGTCGCTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCC 60 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ------------------------------------------------------------ consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 CTATCCATTCCCCTCGCCGCTCTCCAAAACCCTAGCTAACCCCTCCTCCTCCACGTCCCT 120 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ------------------------------------------------------------ consensus_14094#2 GCATTCAGAACATAAGTACATAACCATTATATATTTAGGTTGCAGGAGCTCTTTCATCAC 60 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 TCTCCTCGCCGCCTCCCTCTCCCGCGGCGCCACCCCACTGCCCCTCCTGCGGCGCGATGT 180 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ------------------------------------------------------------ consensus_14094#2 TAATGTTAGTAGAAAAAAGTATATTAGTATCTGCATGATGATTTGAAGGAACTAGTTTAA 120 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 CTCCGCGGCGTACGGCGACGACGACATGGACGACGACTTCGGGGACTTCGACCTCGACGA 240 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ------------------------------------TCAGACATGGCGGCCACCGTGTCG 24 consensus_14094#2 CGATTTCCATCCTTTGAAATATTGCATGCGACCATTTGGATGACTGGTAAACTGGGTCTG 180 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 CGGGGACGGCGTGGGGGACGACGAAGACCTCGACAACGAGCAGGACTACGACGTCGACTA 300 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 CTCTCTCTCGTCGTCTCCGCCTCCGGCTTCCCCTATCCATTCCCCTCGCCGCTCTCCAAA 84 consensus_14094#2 TGATGTCATTGGTTTCACAGTTAGTCCTATGCCTTTTCATCTAGACATTTGTGACAAACA 240 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 CGACCGCCTGCTCGCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGGGAGGGCGACGA 360 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ACCCTAGCTAACCCCCCCCGTCAAGGCGCCGCCGCGCCCACTGTCCGGGGAGGGCGACGA 144 consensus_14094#2 TTTATATTCACATTTTTTTTGCATAGTTAAGTTAGTTAATTTTTGTTTTGTTGAGATTAT 300 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 GGAGGAGGGGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGC 420 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 GGAGGAGGGGGACATCGCCATGGTCGCCGCCCAGAGCTTCGTCTCCACGCAGGACTCCGC 204 consensus_14094#2 CAATATCGAGCTGCTTATTACAGGTTAGTGTCCCTGAAGGAAAGAAGAGGGACAGGAGAA 360 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 CTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACT 480 consensus_14094#4 ------------------------------------------------------CCTACT 6 consensus_14094#1 CTCCGACACCGTGGTCGACTACTCCGTCAACGAGGACGAATTCCACAAGATTCGCCTACT 264 consensus_14094#2 ATGACTTGCTACTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAA 420 consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 G---CACTGCGACTTTTTT-ATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACT 536 consensus_14094#4 G---CACTGCGATTTTTTT-ATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACT 62 consensus_14094#1 G---CACTGCGACTTTTTT-ATCCGCAAGGTGCCTGACCCCGACGACGACGTCTTCGACT 320 consensus_14094#2 GGGATGATGCGACCACTGTGATCCAAAGAGAGG--AGTGGGCAAA--GTCGAGGC-AAGA 475 consensus_14094#3 --TGTCGTACCNCCTGTGTATCCCTAAGAGTAGGTAGTGGGCTAATAGTCGAGGCCAAGA 58 * * * * ** * * * ** * consensus_14094#0 TCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTG 596 consensus_14094#4 TCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTATTCCATCCCAAGGGTTCTTG 122 consensus_14094#1 TCCGGGAGATGTATGTCACGCCGCCTGACACTGACATCTACTCCATCCCAAGGGTTCTTG 380 consensus_14094#2 TGTGG-AGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATT----GGTTCTGA 530 consensus_14094#3 TGTGG-AGAAGCACTTTAGGAAGCTCCGCGACTTTGACTACTCGAATT----GGTTCTGA 113 * ** *** * * * * * ** * *** ** * ****** consensus_14094#0 CTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAA-----AATTTTGGTCGTTACCA 651 consensus_14094#4 CTCCGATGCCGCAAAAGTATTTGAGGTGCACGAAGAAA-----AATTTTGGTCGTTACCA 177 consensus_14094#1 CTCCGATGCCGCAAAAGTATGTGAGGTGCATGAAGAAA-----AATTTTGGTCGTTACCA 435 consensus_14094#2 AGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTA 590 consensus_14094#3 AGAAATAGTAGCTGGAGTCATTCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTA 173 * ** *** * ** * * * ******* * * consensus_14094#0 CGTTAGTG-AGCCGCCTGTTGAGCATT-TGCGTGATCCCCTATACAAGACAGAAAGGGAG 709 consensus_14094#4 TGTTAGTG-AGCCGCCTGTTGAGCATT-TGCGTGATCCCCTATACAAGACAGAAAGGGAG 235 consensus_14094#1 CGTTAGTG-AGCCGCCTGTTGAGCATT-TGCGTGATCCCCTATACAAGACAGAAAGGGAG 493 consensus_14094#2 TATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGG 650 consensus_14094#3 TATTAGAGGAAGCGACCATGGACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGG 233 **** * * ** * * ** *** *** * ** * ** * consensus_14094#0 ATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACG-ACCCAGATTT 768 consensus_14094#4 ATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACG-ACCCAGATTT 294 consensus_14094#1 ATCATGAAGGTTTTCTTAACAAAACATTACAGGAATAGGCGGTGTAACG-ACCCAGATTT 552 consensus_14094#2 CTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTA 710 consensus_14094#3 CTAATTATGTGTACTTTAGGTTTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTA 293 * ** * * * *** * **** * * * ** *** * * ** * consensus_14094#0 TTTCCTTGATTTTGAAGAGATATATGTTATTGACT-CAAAAGCAAGGTCAATCACGAGAG 827 consensus_14094#4 TTTCCTTGATTTTGAAGAGATATATGTTATTGACT-CAAAAGCAAGGTCAATCACGAGAG 353 consensus_14094#1 TTTCCTTGATTTTGAAGAGATATATGTTATTGACT-CGAAAGCAAGGTCAATCACGAGAG 611 consensus_14094#2 TCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACG 770 consensus_14094#3 TCTGTACAAAACTGAAAGGTTTGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACG 353 * * * **** * * *** * *** * * * * * * * *** * consensus_14094#0 CAAAAGTTGTGGTTAG-TGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTA 886 consensus_14094#4 CAAAAGTTGTGCCTAT-TACNNNNTA---------------------------------- 378 consensus_14094#1 CAAAAGTTGTGGTTAG-TGTCCCTGAAGGAAAGAAGAGGGACAGGAGAAATGACTTGCTA 670 consensus_14094#2 AATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCTATACT- 829 consensus_14094#3 AATATGTGGTCCTTGGATTCAGAATGCACGTGTTTTTTATAGTATCGGATATCAAAA--- 410 * * ** ** * * consensus_14094#0 CTCATACGAGATGGAGGGGAATCATTCAGAATAATCGACAAGACCAAAAGGGATGATGCG 946 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 CTCATACGAGATGGAGGGGAATCATTCAGAATAATTGACAAGACCAAAAGGGATGATGCG 730 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 ACCACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTT 1006 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ACCACTGTGATCCAAAGAGAGGAGTGGGCAAAGTCGAGGCAAGATGTGGAGAAGCACTTT 790 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 AGGAAGCTCCGCGACTTTGACTACTCAAATTGGTTCTGAAGAAATAGTAGCTGGAGTCAT 1066 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 AGGAAGCTCCGCGACTTTGACTACTCGAATTGGTTCTGAAGAAATAGTAGCTGGAGTCAT 850 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 TCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGG 1126 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 TCAGCAGAGAAATTATTTTGCTAATTTTGCAGCTGCTTATATTAGAGGAAGCGACCATGG 910 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 ACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGT 1186 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 ACCATGGTGCTCAAGGGAGAATCGCCATCTTCGAGTAGGCTAATTATGTGTACTTTAGGT 970 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 TTTTGTAGCAGGTAGAAGGCATGCCACTTAGCGAGCCTATCTGTAGAAAACTGAAATGTT 1246 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 TTTTGTAGCAGGTAGAAGGCATGCCACGTAGCGAGCCTATCTGTACAAAACTGAAAGGTT 1030 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 TGATGCTTGTGAATGCACTACCTTGTTGAGTAGCCAACGAATATGTGGTCCTTGGATTCA 1306 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 TGATGCTTGTGAATGCACTACCTTGATGGGTAGCGAACGAATATGTGGTCCTTGGATTCA 1090 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 GAATGCACGTGTTTTTTATAGTATCGGATATCTATACTTGGATTCAGAATTTCCTAGGTA 1366 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 GAATGCACGTGTTTTTTATAGTATCGGATATTTAGGCTTGGATTCAGAAAAAAAAAAAAA 1150 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 AGCTTTCCCTCCGGTTTTTTATGTATGAATTTCGTAGGCAAGTCCTGTACTCGGCAGAAT 1426 consensus_14094#4 ------------------------------------------------------------ consensus_14094#1 AAAAAAAAAAAAAAAAGGA----------------------------------------- 1169 consensus_14094#2 ------------------------------------------------------------ consensus_14094#3 ------------------------------------------------------------ consensus_14094#0 CCTCAATATAATCTACAAAGTGGCAGACAGCAGACAATTATGTCAGTAAAAAAA 1480 consensus_14094#4 ------------------------------------------------------ consensus_14094#1 ------------------------------------------------------ consensus_14094#2 ------------------------------------------------------ consensus_14094#3 ------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||