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Oryza sativa
cluster # 1410 cluster # 1410       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_1410#0 length = 1729 sequences # 2  

consensusID : consensus_1410#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1729
fasta sequence
                              [AGCCAGCCGCCGCGCCGGGATCGGCGGCACAACCCCGAGGAGGAACCCCAAGCCGCCGCGTGTCCTCACCCCGCTCCGCCGCTCCGGCCGATTGGTCGCCATCGCCGCCGCGGCGCCGGCCGGATCCGCGTCGGGTCCCCGCCGTTCCGCCCGGCTTAACGGGCAGACGACGGAGCACAAGGCGCTGCCTCTGAAAGGATCTTTGAGTAAGTTTGCCGCGGAGGAAGCAGAGGAGGAGGAGGAGGAGGAGGAGCAAGAAGAGAAGAAGGCGATGGTGGTGATCGACAAGGAGAGGGTGCGGATCCTGCAGGAGCGGAGGTGTGACAGCAAGGGGAGGGGCGCCGTGTACGACCCTGTTCTTGGGATTTGCTGCCATTTCTGCAGGCAGAAGAAATTGTGCGGCGAGGAGGGCTGCAAGCGCTGCGGGGAAGGAGACCTGAACCAGCCTTGCATAGGGAAGACGGATTGCTCCTCTTGCCATTCTTCTTATGGAATACTGTGCCGTGCTTGCCTGAAAGTGAGGTATGGGGAAGACATGGATGAGGTCAGGAAGAACAAGAACTGGATGTGCCCTCACTGTATTGAGGAGAAGGGTACCAAGAAATTCTGGATATGTAACAGCTCCATCTGCTTGAAGAAGAGGAAGTTATCACCAACTGGAATTGCCATATACGACGCGCGGGAGCAAGGTTACGAGTCTGTTGCGCACCTTCTCATGGACAAGCTGAAGTGCCGAGCATTCTGAGGTCTTCTATGTCGTTCAGAGACGACGATGATGTTTGCCTAGCGCACTGGAAGGTGGAAGGGCCCCTTTTGTTTTGTTGACAGTAGGTATGACGCACTTTAGGAGAAAAACTAGTGTAGAAATGAGTACCACTATTGTGCTCAAGATTGTGAATCTAGTACTAGAACCTTTTGTAGCCGATGTTTCCATATGCTGCTTGTGTTTGGGGGCAGCTGGGCTATTGACTGTTCTTCTGAAGATCCAAGCAAGGGAACATGTATTGCCTTTTCAATCAGTGGTTGATGAGTCATGACCATAACTGTGTCTGCTACTTGCTAATTTCATGGCTTAATGTCATTTGTACCAAACGATAATTTTGTTAAACATTGGTGCCTTGGTGGCATGCCTTCTCGTCCCCCCCCCCCCCCTCTTCTTCCCTCCAATCCTTCTCTCTCATTTTNTGGCCTCTCCTCCCCCTCCTTCCCTCCCCTTTTCCCCCCCCCTTTCCCACACCCCTTTCTTTTCCTTTTTTTTTCCTCTATCTTCCATCCCCTTTCCCCTCCTATCCCCCTCCANTCCATCTCCTTCTTATATCCCTCTCACTCCTCCTCTCCCTCTCCTTTTTTTCCCCTTCCCCTATATTCCTCCTTTTTCTCTTTTTCCCCTCCCCCTCCACTCATTTCCCTCTCTTTTCCACTTTTATCTTCTGGCCCCTCCCTCTCCTAACCCCCATCTCATTCCCCTCTCACACTCCCTCCAATCCCCTCCCCTCTTTTACTTCTTTTTTTTATAACTCCCCTCCCTCTTTATACCCCTATTCCTCTTTCTTCTTTCCCTCCCCCTTTTTCTTCACCTTCTTCTTCCATCCTCCCCCCTCATCTCTCCCTATTCCCCATTTCCACAGTCTTCTTCTTCTAACCCCACAATTCTCCCCTCCTCCTTCTCTTCTTCCCGAGCCTCCTTTTACCCCCCCTCATTCACACCTCCCTTCCCTCCCTCCTCCCC]

[+] EMBL AK106258             [AGCCAGCCGCCGCGCCGGGATCGGCGGCACAACCCCGAGGAGGAACCCCAAGCCGCCGCGTGTCCTCACCCCGCTCCGCCGCTCCGGCCGATTGGTCGCCATCGCCGCCGCGGCGCCGGCCGGATCCGCGTCGGGTCCCCGCCGTTCCGCCCGGCTTAACGGGCAGACGACGGAGCACAAGGCGCTGCCTCTGAAAGGATCTTTGAGTAAGTTTGCCGCGGAGGAAGCAGAGGAGGAGGAGGAGGAGGAGGAGCAAGAAGAGAAGAAGGCGATGGTGGTGATCGACAAGGAGAGGGTGCGGATCCTGCAGGAGCGGAGGTGTGACAGCAAGGGGAGGGGCGCCGTGTACGACCCTGTTCTTGGGATTTGCTGCCATTTCTGCAGGCAGAAGAAATTGTGCGGCGAGGAGGGCTGCAAGCGCTGCGGGGAAGGAGACCTGAACCAGCCTTGCATAGGGAAGACGGATTGCTCCTCTTGCCATTCTTCTTATGGAATACTGTGCCGTGCTTGCCTGAAAGTGAGGTATGGGGAAGACATGGATGAGGTCAGGAAGAACAAGAACTGGATGTGCCCTCACTGTATTGAGGAGAAGGGTACCAAGAAATTCTGGATATGTAACAGCTCCATCTGCTTGAAGAAGAGGAAGTTATCACCAACTGGAATTGCCATATACGACGCGCGGGAGCAAGGTTACGAGTCTGTTGCGCACCTTCTCATGGACAAGCTGAAGTGCCGAGCATTCTGAGGTCTTCTATGTCGTTCAGAGACGACGATGATGTTTGCCTAGCGCACTGGAAGGTGGAAGGGCCCCTTTTGTTTTGTTGACAGTAGGTATGACGCACTTTAGGAGAAAAACTAGTGTAGAAATGAGTACCACTATTGTGCTCAAGATTGTGAATCTAGTACTAGAACCTTTTGTAGCCGATGTTTCCATATGCTGCTTGTGTTTGGGGGCAGCTGGGCTATTGACTGTTCTTCTGAAGATCCAAGCAAGGGAACATGTATTGCCTTTTCAATCAGTGGTTGATGAGTCATGACCATAACTGTGTCTGCTACTTGCTAATTTCATGGCTTAATGTCATTTGTACCAAACGATAATTTTGTTAAACATTGGTGCCTTGGTGGCATG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL CA757854             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GAGAAAAACTAGTGTAGAAATGAGTACCACTATTGTGCTCAAGATTGTGAATCTAGTACTAGAACCTTTTGTAGCCGATGTTTCCATATGCTGCTTGTGTTTGGGGGCAGCTGGGCTATTGACTGTTCTTCTGAAGATCCAAGCAAGGGAACATGTATTGCCTTTTCAATCAGTGGTTGATGAGTCATGACCATAACTGTGTCTGCTACTTGCTAATTCCATGGCTCAATGTCATCCGTACCAAACGATAATTTTGTCAAACATCGGCGCCTTGGTGGTTTGCCTTCTCGTCCCCCCCCCCCCCCTCTTCTTCCCTCCAATCCTTCTCTCTCATTTTNTGGCCTCTCCTCCCCCTCCTTCCCTCCCCTTTTCCCCCCCCCTTTCCCACACCCCTTTCTTTTCCTTTTTTTTTCCTCTATCTTCCATCCCCTTTCCCCTCCTATCCCCCTCCANTCCATCTCCTTCTTATATCCCTCTCACTCCTCCTCTCCCTCTCCTTTTTTTCCCCTTCCCCTATATTCCTCCTTTTTCTCTTTTTCCCCTCCCCCTCCACTCATTTCCCTCTCTTTTCCACTTTTATCTTCTGGCCCCTCCCTCTCCTAACCCCCATCTCATTCCCCTCTCACACTCCCTCCAATCCCCTCCCCTCTTTTACTTCTTTTTTTTATAACTCCCCTCCCTCTTTATACCCCTATTCCTCTTTCTTCTTTCCCTCCCCCTTTTTCTTCACCTTCTTCTTCCATCCTCCCCCCTCATCTCTCCCTATTCCCCATTTCCACAGTCTTCTTCTTCTAACCCCACAATTCTCCCCTCCTCCTTCTCTTCTTCCCGAGCCTCCTTTTACCCCCCCTCATTCACACCTCCCTTCCCTCCCTCCTCCCC]


>consensus_1410#0 AGCCAGCCGCCGCGCCGGGATCGGCGGCACAACCCCGAGGAGGAACCCCAAGCCGCCGCG TGTCCTCACCCCGCTCCGCCGCTCCGGCCGATTGGTCGCCATCGCCGCCGCGGCGCCGGC CGGATCCGCGTCGGGTCCCCGCCGTTCCGCCCGGCTTAACGGGCAGACGACGGAGCACAA GGCGCTGCCTCTGAAAGGATCTTTGAGTAAGTTTGCCGCGGAGGAAGCAGAGGAGGAGGA GGAGGAGGAGGAGCAAGAAGAGAAGAAGGCGATGGTGGTGATCGACAAGGAGAGGGTGCG GATCCTGCAGGAGCGGAGGTGTGACAGCAAGGGGAGGGGCGCCGTGTACGACCCTGTTCT TGGGATTTGCTGCCATTTCTGCAGGCAGAAGAAATTGTGCGGCGAGGAGGGCTGCAAGCG CTGCGGGGAAGGAGACCTGAACCAGCCTTGCATAGGGAAGACGGATTGCTCCTCTTGCCA TTCTTCTTATGGAATACTGTGCCGTGCTTGCCTGAAAGTGAGGTATGGGGAAGACATGGA TGAGGTCAGGAAGAACAAGAACTGGATGTGCCCTCACTGTATTGAGGAGAAGGGTACCAA GAAATTCTGGATATGTAACAGCTCCATCTGCTTGAAGAAGAGGAAGTTATCACCAACTGG AATTGCCATATACGACGCGCGGGAGCAAGGTTACGAGTCTGTTGCGCACCTTCTCATGGA CAAGCTGAAGTGCCGAGCATTCTGAGGTCTTCTATGTCGTTCAGAGACGACGATGATGTT TGCCTAGCGCACTGGAAGGTGGAAGGGCCCCTTTTGTTTTGTTGACAGTAGGTATGACGC ACTTTAGGAGAAAAACTAGTGTAGAAATGAGTACCACTATTGTGCTCAAGATTGTGAATC TAGTACTAGAACCTTTTGTAGCCGATGTTTCCATATGCTGCTTGTGTTTGGGGGCAGCTG GGCTATTGACTGTTCTTCTGAAGATCCAAGCAAGGGAACATGTATTGCCTTTTCAATCAG TGGTTGATGAGTCATGACCATAACTGTGTCTGCTACTTGCTAATTTCATGGCTTAATGTC ATTTGTACCAAACGATAATTTTGTTAAACATTGGTGCCTTGGTGGCATGCCTTCTCGTCC CCCCCCCCCCCCTCTTCTTCCCTCCAATCCTTCTCTCTCATTTTNTGGCCTCTCCTCCCC CTCCTTCCCTCCCCTTTTCCCCCCCCCTTTCCCACACCCCTTTCTTTTCCTTTTTTTTTC CTCTATCTTCCATCCCCTTTCCCCTCCTATCCCCCTCCANTCCATCTCCTTCTTATATCC CTCTCACTCCTCCTCTCCCTCTCCTTTTTTTCCCCTTCCCCTATATTCCTCCTTTTTCTC TTTTTCCCCTCCCCCTCCACTCATTTCCCTCTCTTTTCCACTTTTATCTTCTGGCCCCTC CCTCTCCTAACCCCCATCTCATTCCCCTCTCACACTCCCTCCAATCCCCTCCCCTCTTTT ACTTCTTTTTTTTATAACTCCCCTCCCTCTTTATACCCCTATTCCTCTTTCTTCTTTCCC TCCCCCTTTTTCTTCACCTTCTTCTTCCATCCTCCCCCCTCATCTCTCCCTATTCCCCAT TTCCACAGTCTTCTTCTTCTAACCCCACAATTCTCCCCTCCTCCTTCTCTTCTTCCCGAG CCTCCTTTTACCCCCCCTCATTCACACCTCCCTTCCCTCCCTCCTCCCC



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)