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Oryza sativa
cluster # 14103 cluster # 14103       Sequences # 15       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14103#0 length = 2094 sequences # 13  
consensus_14103#1 length = 703 sequences # 1  
consensus_14103#2 length = 378 sequences # 1  

consensusID : consensus_14103#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 13
consensus length = 2094
fasta sequence
                              [TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACATGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATC-AAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAG-CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA--AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCCTCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTGTTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTCGCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC-CGGTCTCC-AGTAACGGGTC-CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG]

[-] EMBL BI797793             [TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACATGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATC AAAATGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGG CGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTG TGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAA CGAGCCCCAGAA CA TTCTGTCTCTTCTTTCGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL AU100972             [                                                                                                                    tTTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTNTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATNTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA  AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CB679307             [                                                                                                                                               ATC AAATTGCGATTTTCAAAACCAACTCCAGCGTAGTGAGTTTGCATGGACCATGGATTACTAG CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA  AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL CB661238             [                                                                                                                                                      TTGCGATTTTCAAAACCAACTCCCTTGGAGTGAGTTTGCATGGACCATGGATTACTAA CCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA  AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCAAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[-] EMBL CF304435             [                                                                                                                                                                                      AGTTTGCATGGACCATGGA TACTAGCCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAA  AGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGT AAACA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ]
[-] EMBL CB661237             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               TAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCTTCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTAGTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACAAGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCCTCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTGTTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTCGCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCCTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[-] EMBL D43580               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCCAGGATCCATGCTTGAATCATCAGTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTCAGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCAATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGATCGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTGCCAACAG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[-] EMBL CB679306             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ATTCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTGGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGC      ]
[-] EMBL CB680637             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TCGCGTGAAACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGC      ]
[-] EMBL CF306814             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGA                                                                                                                                                                                                                              ]
[-] EMBL CB618719             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ATTCTGCCAGTCGAGGGTCTCCACCACACCACTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCTTGCGCTTCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGGCTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTTTTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGTGATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGAGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGAGGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACC CGGTCTCC AGTAACGGGTC CAGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTG CCCCGGCGGCGCGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCGCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAAT                                                ]
[-] EMBL C28854               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               GCCTTCTGGGACTGTGTAGCTGACCNCGGTCTCCAAGTAACGGGTCNCAANACGTAGTGCGTGATGGTCGGCATGGTGATGCGNCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGNAG NCCCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGC                                                                            ]
[-] EMBL OSC109271            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGACC CGGTCTCC AGTAACGGGTC CAAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCNG GGGCGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG]


>consensus_14103#0 TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACA TGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTC AAGATCACGAACACAATGATCAGATCAAATTGCGATTTTCAAAACCAACTCCAGTGGAGT GAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAAC CAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCC CATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCA AAAGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATT TCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCT TGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGG GTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGT TGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCT TCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTA GTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACA AGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCA GTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTC AGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCA ATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGAT CGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTG CCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCC TCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTG TTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTC GCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAA ACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCA CTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCT TCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGG CTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTT TTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGT GATGTGCTCTCAGGCGTGGCGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGGA GCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGGA GGCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCC AGCACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATCAGAGGGAGATCAC CGGAGATTTCGACTTCCTGGCATCAACGGCGGCGCCCAGCCACCTGCCCCCGGCGGCGCG CGCGCGCGCGTGCGATGCGAGCGGCGCCTCCACCTCGCGCGGGTCGCGTCGCTGCGAGGA AACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCCGTCTCTTCCTCCTATCGCGTT TCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAATAAGCGGCGCGAGACG



consensusID : consensus_14103#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 703
fasta sequence
                              [TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT]

[+] EMBL CB618720             [TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT]


>consensus_14103#1 TCTTTTTTTTAACGCTACACAAACAGAATGGTAAAACCATCACAATTCAAGATCACGAAC ACAATGATCAGATCAAAATTGCGATTTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATG GACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAACCAACTATGCAA AGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAAGGAGATGGCCCATTCGACATT TACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTT ATACAATCTTTTCTTTCCTCTAGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGG TCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCT TGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCA AGCCCAACCGAGACCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTC GACATCTCTGCAAGACATTAGGAAAGGAATTCACTCATCAATTACATGATTATTTGCAAT ATACTACCAACTAATGTTTCTGATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTA TAACTATAACAATGCATTTCATATCAGTCTGAATTTAGACAAT



consensusID : consensus_14103#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 378
fasta sequence
                              [GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGAGCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCC]

[-] EMBL C28611               [GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGGTCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTGGCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGAGCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCGCCCCCCGCCGCCGCCGCC]


>consensus_14103#2 GCCGTANAACTTCGCCAAAAAATTTTCGNTCTCTTAAAAGGAACCACCGAACAGGTATCG GCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGNAGNCGGCTTGGAAGCAGCCT TCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAACGGGTCACAGACGTAGTGCGTGATGG TCGGCATGGTGATGCGGCTGCCGGAATNAGAGGGAGATCACCGGAGATTTCGACTTCCTG GCATTAACGGCGGCGCCCAGCCACCTGCCCCCGGNCGGGGCGCGCGNGCGTGCGATGCGA GCGGCGCCTCCACCTNGCCGGGTCGCGTCGCTGCGAGGAAACCCTAGCCGCCGTGTCGCG CCCCCCGCCGCCGCCGCC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14103#0      TTTTTGACGACGGTAGTTCATCCGTCCAATGCACAGCTGAGATGCAATTATACATTTACA 60
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TGTGCAAATGACCGACAAGATTAACGCTACACAAACAGAATGGTAAAACCATCACAATTC 120
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      AAGATCACGAACACAATGATCAGATCAAATTGCGATTTTCAAAACCAACTCCAGTGGAGT 180
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      GAGTTTGCATGGACCATGGATTACTAGCCATCCACATTCCTCGTATTATTTTTGCACAAC 240
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      CAACTATGCAAAGAGGGATTTACTGTGAGGGAATGGAGCCAGTCCTGTAGGGAGATGGCC 300
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      CATTCGACATTTACAGAGGAAGCGGCGAATGAAGATTGCAGTGATCACGGCCGATCACCA 360
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      AAAGAACTTATACAATCTTTTCTTTCCCCTAGGATTGTATAGTTAGAGCTTGTTAGGATT 420
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TCTGAAGGGTCGAGAAGATACATCTTCATCTAGCTCTAATCGCTGTTGGTATTAGAGTCT 480
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TGACTGGCTTGGGGCTGCGCTGCAGGTAGGTAGGACCAGGCAATGGCTGCTGTGCCAAGG 540
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      GTAACTGCAAGCCCAACCGAGCCCCAGAACCACTTCTGTCTCTTCTTTCGGATATTTCGT 600
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TGTTGCCTCGACATCTCGATAGCCTCTTGGTTTCTTTGAGACATCTCCCTGTTTGCAGCT 660
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TCATAGTACTGGACCCTATCGGATAGCCTTGCAATCTCGAAGTTCTTTGCTGCAATCTTA 720
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      GTTTCCATATCTGTCTCAACTTCTGCACGAGCAAATCCCCGTGCAATAGCAGCAGCCACA 780
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      AGTTGTGAAACAGTTATTTGTTGGCACAACTCAGCTCCAGGATCCATGCTTGAATCATCA 840
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      GTGTCCTCAGCTAAACTTGGAGGTGGAAGTGTCAAGGCAATAAGTGATAGGTGATCACTC 900
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      AGCTTCTTCCACTCCTTTTGCCAGTTCTCAAGTGCTTCCTCAGCTTGCTTCCTTCTCTCA 960
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      ATTTCCATCAACAGACTCAACCTCATTTCACGAAGGTCATCATCCATGCATTGTGAAGAT 1020
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      CGAGTTGCACCATCACTGGATATTTCTTCGAATGCATCATAAAATTCTGCACCAGGTGTG 1080
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      CCAACAGATGTCCCAAGAGGGGAACTAGGCTTCCACCACCGCTCATGCCCACCAGCATCC 1140
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TCCGCCTCAGAGTTACTAGCCATGCTCAGTGAATCCTGAAGCTCAAAGAAGGCATCATTG 1200
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TTGATTTTCCTTGGTGTTCCACCATTGGCAGGCCTTCCAACATTGACAGGCCTCACTGTC 1260
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      GCATCAGGATTTCCATGCTGAAACTCGAACTCAGCCTGATCATGCCCATATTCGCGTGAA 1320
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      ACAGTGCCCTTGCCCTTCTGTAGCATTCCATTCTGCCAGTCGAGGGTCTCCACCACACCA 1380
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      CTGTCACCTTCAAGTACACCATTGCTTGCTTGCTGAAACTCAAACTCAGGTTCCTGCGCT 1440
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      ------------------------------------------------------------
                                                                                   

consensus_14103#0      TCAAAGGATTGACTTCTTTTCGGCAAAGGAGGCAGCGTCACAGAGAGCGTGGGCTGCTGG 1500
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      -----------------------------------TCTTTTTTTTAACGCTACACAAACA 25
                                                                                   

consensus_14103#0      CTACCATCACTACCAACATCCCCCTGGGAAAGTGTCTTCACCAAGCAGGGTCCCCTCCTT 1560
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      GAATGGTAAAACCATCACAATTCAAGATCACGAACACAATGATCAGATCAAAATTGCGAT 85
                                                                                   

consensus_14103#0      TTATGGTTGATGAGGTACGGTGACCAGGTTCCTGGGAACGACGAAGGCGAATCCGGCAGT 1620
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      TTTCAAAACCAACTCCAGTGGAGTGAGTTTGCATGGACCATGGATTACTAGCCATCCACA 145
                                                                                   

consensus_14103#0      GATGTGCTCTCAGGCGTGG-CGTACAGCGTCGCCGACGCAGTCTGCGCTCTCCTGACAGG 1679
consensus_14103#2      -----------------GC-CGTANAACTTCGCCAAAA-AATTTTCGNTCTCTTAAAAGG 41
consensus_14103#1      TTCCTCGTATTATTTTTGCACAACCAACTATGCAAAGAGGGATTTACTGTGAGGGAATGG 205
                                        *  *    * *   **  *       *           *  **

consensus_14103#0      AGCCACCGGCACAGGTATCGGCTTCTCGGCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGG 1739
consensus_14103#2      AACCACCGA-ACAGGTATCGGCTTCTCGNCGGCCTTCTCCTGAGGAAGGGGAGGAGCTGN 100
consensus_14103#1      AGCCAGTCCTGTAAGGA--GATGGCCCATTCGACATTTACAGAGGAAGCGGCGAA--TGA 261
                       * ***       * * *  *    * *    * * * * * ******* ** * *  ** 

consensus_14103#0      AGGCGGCT-TGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAAC---- 1794
consensus_14103#2      AGNCGGCT-TGGAAGCAGCCTTCTGGGACTGTGTAGCTGACCCGGTCTCCAGTAAC---- 155
consensus_14103#1      AGATTGCAGTGATCACGGCCGATCACCAAAAGAGAACTTATACAATCTTTTCTTTCCTCT 321
                       **   **  **    * ***       *      * ** *  *  ***    *  *    

consensus_14103#0      -GGGTCCAGCACGTAGTGCGTGATGG----TCGGCATGGTGATGCGGCTGC--CGGAATC 1847
consensus_14103#2      -GGGTCACAGACGTAGTGCGTGATGG----TCGGCATGGTGATGCGGCTGC--CGGAATN 208
consensus_14103#1      AGGATTGTATAGTTAGAGCTTGTTAGGATTTCTGAAGGGTCGAGAAGATACATCTTCATC 381
                        ** *     *  *** ** ** * *    ** * * ***   *  * * *  *   ** 

consensus_14103#0      AGAGGGAGATCACCGGAGATTTCGACTTCCTGGC--ATCAACGGCGGCGCC-CAGCCACC 1904
consensus_14103#2      AGAGGGAGATCACCGGAGATTTCGACTTCCTGGC--ATTAACGGCGGCGCC-CAGCCACC 265
consensus_14103#1      TAGCTCTAATCGCTGTTGGTATTAGAGTCTTGACTGGCTTGGGGCTGCGCTGCAGGTAGG 441
                               *** * *  * * *     ** ** *        *** ****  ***  *  

consensus_14103#0      TGCCCCCGGCGGCGCGCGCGCGCGC---GTGCGA-TGCGAGCGGCGCCTCCACCTCGCGC 1960
consensus_14103#2      TGCCCCCGGNCG-GGGCGCGCGNGC---GTGCGA-TGCGAGCGGCGCCTCCACCTNGC-C 319
consensus_14103#1      TAGGACCAGGCAATGGCTGCTGTGCCAAGGGTAACTGCAAGCCCAACCGAGACCCAGAAC 501
                       *    ** *      **    * **   * *  * *** ***    **   ***  *  *

consensus_14103#0      GGGTCGCGTCGCTGCGAGGAAAC-CCTAGCCGCCGTGTCGCGCCCCCCGCC-GCCGCCGC 2018
consensus_14103#2      GGGTCGCGTCGCTGCGAGGAAAC-CCTAGCCGCCGTGTCGCGCCCCCCGCC-GCCGCCGC 377
consensus_14103#1      CACTTCTGTCTCTTCTTTCGGATATTTCGTTGTTGCCTCGACATCTCTGCAAGACATTAG 561
                          *   *** ** *      *    * *  *  *  ***    * * **  * *     

consensus_14103#0      CGTCTCTTCCTCCTATCGCGTTTCGAATTTTATGTGCGGGACACAACAAAAAAAAATAAA 2078
consensus_14103#2      C----------------------------------------------------------- 378
consensus_14103#1      GAAAGGAATTCACTCATCAATTACATGATTATTTGCAATATACTACCAACTAATGTTTCT 621
                                                                                   

consensus_14103#0      TAAGCGGCGCGAGACG-------------------------------------------- 2094
consensus_14103#2      ------------------------------------------------------------
consensus_14103#1      GATACAAAGCAGTTAATGGCAAAAGATGTAAAAATATTATAACTATAACAATGCATTTCA 681
                                                                                   

consensus_14103#0      ----------------------
consensus_14103#2      ----------------------
consensus_14103#1      TATCAGTCTGAATTTAGACAAT 703
                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)