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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14111#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 810 fasta sequence
[AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA-GGAAAGGAAAAAAAATGGCA-CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC-CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT-CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA-GGTTCTTCTGTCGATC-TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGAAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AK120237 [AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCATTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGAAttattgttc ]
[+] EMBL CF294377 [AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGG ]
[+] EMBL CF300400 [AAAACATTCTTCAGTTGATCTTGACATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAAaaaa ]
[-] EMBL CF300399 [ AAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA AAA AAAAAAA ]
[+] EMBL CF326530 [ gCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAAGGGAAAGGAAAAAAAATGGCATCTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGA ]
[+] EMBL CF293966 [ TTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGC ]
[+] EMBL OSS4285A [ TCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGAGCTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGGTTCTTCTGTCGGTCTTGCTCGCTGCTGACGGNCCCGAACCCGGACGNTCCGCTGGTGCCGGAGGTC ]
[+] EMBL CF296051 [ TCCCATCTCAAGAACTGATCAA GGAAAGGAAAAAAAATGGCA CTGAGGAGAATAATCAAGGTTTTCAAGGACCTTCAGAGGGATCCGCCGACTTCCTGCAGCGCCGGGCTTTGT TCTGANGACATGTTCCATTGTCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCACCCACTT CCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATC ]
[-] EMBL CA758973 [ gacgagacaAGGGGGATCCGCCGACTTCCTGCAGCGCCGGGC CTGTGTTTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTTATATGTGCAAGACTGATCGCCTCAGATACGAATCCCCCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCCAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCCCCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATTTGAATCATCGTTATCATCTAACCTATAATAAAAAACCATTGTTTTCTTGGTGAGGAGGAATAATAAAAGTTTGCGATTTTGGCGAAAAAAAAAAAAAAA ]
[-] EMBL CF293965 [ GCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAA GGTTCTTCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGAAAAAA ]
[-] EMBL CF294378 [ TCTGTCGATC TGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATGGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTATGCGATTTTGACGGAAAAAA ]
[+] EMBL CA754324 [ AATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCGATTTTGACGGANAAAAAAAAAAAAAAAAAAAAAAA]
consensusID : consensus_14111#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 772 fasta sequence
[CGCCGACTTCCTGCAGCGCCGGTGATACGCAAATCTTTGCATTACATCCTGAAAATCTTCAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAA-ATTTTCTCATTGTTGTTGATGAATTGGTGAAAATTCAATCAGGGCCTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCT]
[-] EMBL CB642754 [CGCCGACTTCCTGCAGCGCCGGTGATACGCAAATCTTTGCATTACATCCTGAAAATCTTCAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAA ATTTTCTCATTGTTGTTGATGAATTGGTGAAAATTCAATCAGGGCCTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCT]
[+] EMBL CB642753 [ AATCTTTGCATTACATCCTGAAAATCTTCAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAAGATTTTCTCATTGTTGTTGATGAATTGGTGAAAATTCAATCAGGGCCTGTGTCTGATGACATGTTCCACTGGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGACCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAAGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATA ]
[-] EMBL CF296050 [ CCAAAGGTGGCATTCAAGACCAAGGTGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGTGGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACCCGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCAGATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGCAAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATCAGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGATAGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATCATCTAACCTATAATCAAAAACCATCGTCTTTTTGGTGAGGAGGAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14111#0 AAAACATTCTTCAGTTGATCTTGAGATTAAGTCACTCCTCCATCCCATCTCAAGAACTGA 60
consensus_14111#1 -CGCCGACTTCCTGCAGCGCCGGTGATACGCAAATCTTTGCATTACATCCTGAAAATCTT 59
* * * * * * * *** * * *** **** * **
consensus_14111#0 TCAA-GGAAAGGAAAAAAAATGGCACTGAGGAGAATAAT--CAAGGAGCTCAAGGACCTT 117
consensus_14111#1 CAGATAGAAATGTTCAGAAACAAAATCAAGAAGATCTATTGCATTAAATTTTCTCATTGT 119
* **** * * *** * ** *** ** ** * * * *
consensus_14111#0 CA--GAGGGATCCGCCGACTTCCTGCAGCGCCGGGCCTGTGTCTGATGACATGTTCCACT 175
consensus_14111#1 TGTTGATGAATTGGTGAAAATTCAAT----CAGGGCCTGTGTCTGATGACATGTTCCACT 175
** * ** * * * * * ****************************
consensus_14111#0 GGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGA 235
consensus_14111#1 GGCAAGCAACAATCATGGGGCCCAATGACAGCCCCTACTCTGGAGGAGTGTTCCTGGTGA 235
************************************************************
consensus_14111#0 CCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGG 295
consensus_14111#1 CCATCCACTTCCCTCCTGACTACCCTTTCAAGCCTCCAAAGGTGGCATTCAAGACCAAGG 295
************************************************************
consensus_14111#0 TGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGT 355
consensus_14111#1 TGTTCCATCCAAACATAAACAGCAATGGCAACATCTGCCTTGACATCCTCAAGGACCAGT 355
************************************************************
consensus_14111#0 GGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACC 415
consensus_14111#1 GGAGCCCAGCTCTCACCATCTCCAAGGTTCTTCTGTCGATCTGCTCGCTGCTGACGGACC 415
************************************************************
consensus_14111#0 CGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCA 475
consensus_14111#1 CGAACCCGGACGATCCGCTGGTGCCGGAGATCGCTCATATGTGCAAGACTGATCGCCTCA 475
************************************************************
consensus_14111#0 GATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGC 535
consensus_14111#1 GATACGAATCCACCGCAAGAGGCTGGACGCAGAAGTACGCCATGGGCTAAGCTTAGCTGC 535
************************************************************
consensus_14111#0 AAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATC 595
consensus_14111#1 AAGCTAGCTAATTGCAGCTGAAATGGCAATTGGATTTGGATTTGGATGCAGGGGACAATC 595
************************************************************
consensus_14111#0 AGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGAT 655
consensus_14111#1 AGTCAATCACCAGCATGTCGATTAGAATTCAGAAATATAGATCGTGCCATAAAAAAAGAT 655
************************************************************
consensus_14111#0 AGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATC 715
consensus_14111#1 AGTAATAATTCTTGCTTGCAATTATTAGGATTGTTGTTGCAAATCTGAATCATCGTTATC 715
************************************************************
consensus_14111#0 ATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCTGCG 775
consensus_14111#1 ATCTAACCTATAATCAAAAACCATCGTCTTCTTGGTGAGGAGGAATAATAAAAGTCT--- 772
*********************************************************
consensus_14111#0 ATTTTGACGGAAAAAAAAAAAAAAAAAAAAAAAAA 810
consensus_14111#1 -----------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||