These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1226 fasta sequence [CCCCCCCTTGGGCCCGGGGGGGGAAAAAAAAACCTTTGGGTCCTCCCCAAAAAGGGGAAAGGGGGTTTTTTTTTTAAGGGGGGAACCCCTAAACCCCCGGGTTAAAAGGGGGGCCAATTTTTGGAAAGGGGAATGGGGGGGGCCTTTTTTTTTTTTTCCCCCCTGGGAAAAAGGGGGTTTTTTCCAAAAGCATTAAATTGGGGGAACCCCGGGTTTTTCCCCCCCCCCCGTTTTTAAAAACCGGCCCGTTTATTTTTTAAACCCCCCCTTAAAGGGGGATTTTTTTTTTGGGCCCGGAAATTCCCCCTTTTTAAAAAAAGGGAAAAAAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---GAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCTTCAAAATATCAAAGTAGTACAATGAGCAGCAGCATAAAAAGTGAATGCTTCACCATGTGATACTAAATGGCAAAACATAATTGTGCATGAAACCTATTCTAACATTAGGCTCGCAATCCGTAATTTGACTCAACTGATGGATACTTGAGCATGTATTTTGGAACCTACCACTAGTCAAAGTTAGCCAATTGTTAACAAATGGAACATAGAGTTTGAACAGGAGAGAAAAATATTATACCAAAATATTTCATACTTAAATAATTGGACACAAACAGATGTTGTTCAGAATTGAGTATGACGCAGTTATTGATGGTAATGGCAAGAGCTTTATCATCCCAACTCCTAGGACATGTCTTGCACAAATAATGTATAAAAAGGCCTCTGGAGGCACTGAAAATAATTGGCAAAACAATGCAGCATAGATAGTGCCAGAATCCTAGATCTAGATTGCTAGAAATGTATTTCTTAAGGCACCACAGTAACATT] [-] EMBL CF337509 [CCCCCCCTTGGGCCCGGGGGGGGAAAAAAAAACCTTTGGGTCCTCCCCAAAAAGGGGAAAGGGGGTTTTTTTTTTAAGGGGGGAACCCCTAAACCCCCGGGTTAAAAGGGGGGCCAATTTTTGGAAAGGGGAATGGGGGGGGCCTTTTTTTTTTTTTCCCCCCTGGGAAAAAGGGGGTTTTTTCCAAAAGCATTAAATTGGGGGAACCCCGGGTTTTTCCCCCCCCCCCGTTTTTAAAAACCGGCCCGTTTATTTTTTAAACCCCCCCTTAAAGGGGGATTTTTTTTTTGGGCCCGGAAATTCCCCCTTTTTAAAAAAAGGGAAAAAAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAA ] [+] EMBL CB625946 [ tcTTTTTTTTTTTTTTT GAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCTTCAAAATATCAAAGTAGTACAATGAGCAGCAGCATAAAAAGTGAATGCTTCACCATGTGATACTAAATGGCAAAACATAATTGTGCATGAAACCTATTCTAACATTAGGCTCGCAATCCGTAATTTGACTCAACTGATGGATACTTGAGCATGTATTTTGGAACCTACCACTAGTCAAAGTTAGCCAATTGTTAACAAATGGAACATAGAGTTTGAACAGGAGAGAAAAATATTATACCAAAATATTTCATACTTAAATAATTGGACACAAACAGATGTTGTTCAGAATTGAGTATGACGCAGTTATTGATGGTAATGGCAAGAGCTTTATCATCCCAACTCCTAGGACATGTCTTGCACAAATAATGTATAAAAAGGCCTCTGGAGGCACTGAAAATAATTGGCAAAACAATGCAGCATAGATAGTGCCAGAATCCTAGATCTAGATTGCTAGAAATGTATTTCTTAAGGCACCACAGTAACATT] [-] EMBL BI796951 [ TTTTTAT GAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTC ] consensusID : consensus_14113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence [CAGAGACTGGCAGGGAAAGCCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGTACGCGTCTCCTCCCTGTAGCTCCGTGCTGTTCACCTGCGCGCACAGCAGCTCGTCTCGTAAGTGAATTGACCTCTTCTCGCTGATGTGATTTTGGTGGACTACTCGATCTCTGCGTGGTTTTTTAGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTTAGCACTCTGTCAGGCCGTCTACATTAAGACCTTTGAGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATTGGTAATTCATATTCATTGCTTTGTGAAGATTTCACTAAGCGGGCCTCATTCCATATTGGGAAGGGCAGTTGTTGTTCATGCTGATTCTGATGACCTANGAAGGGGTAAGCATTATGTCATTACTCTTGCAAGATTGTTATTGGTCATTCAGAATTGAAGAGAAGTCTCCCTTCCTACATTATATATGTCCTCTTATTTTAGAAAATATTGAATTCACTATTTAGAGGGTAATTTAGAGCTTATTACCTGCTGAATGGCGTGCTAT] [+] EMBL CB625945 [CAGAGACTGGCAGGGAAAGCCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGTACGCGTCTCCTCCCTGTAGCTCCGTGCTGTTCACCTGCGCGCACAGCAGCTCGTCTCGTAAGTGAATTGACCTCTTCTCGCTGATGTGATTTTGGTGGACTACTCGATCTCTGCGTGGTTTTTTAGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTTAGCACTCTGTCAGGCCGTCTACATTAAGACCTTTGAGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATTGGTAATTCATATTCATTGCTTTGTGAAGATTTCACTAAGCGGGCCTCATTCCATATTGGGAAGGGCAGTTGTTGTTCATGCTGATTCTGATGACCTANGAAGGGGTAAGCATTATGTCATTACTCTTGCAAGATTGTTATTGGTCATTCAGAATTGAAGAGAAGTCTCCCTTCCTACATTATATATGTCCTCTTATTTTAGAAAATATTGAATTCACTATTTAGAGGGTAATTTAGAGCTTATTACCTGCTGAATGGCGTGCTAT] consensusID : consensus_14113#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 795 fasta sequence [TGCAACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAAATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA-TACCACCACCA-CCTCAAGCTTCATGACTATAGA-TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC-TGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTGTTGGCTACTATGTTTCCCAGGTCGCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGGCTTTCCCTGCCATTCTCTGCCGCTT] [+] EMBL CF333049 [TGCAACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGAGGAAACTTTTCCTTTATTTATAAAATATACTCCGTATGTTCGTTCAAAAAAAAAATATACTCCGTAACAAAGTACGTTTAAATAACTGAAGGCAGGGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCCCCAATGATTTCCATATTTTTGAACAGCA TACCACCACCA CCTCAAGCTTCATGACTATAAA TTGTTAAACTGCAAATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGCTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAAAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAATGAAATCTGTAGGT ] [-] EMBL AU058267 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA TACCACCACCA CCTCAAGCTTCATGACTATAGA TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTCGGa ] [-] EMBL BI807915 [ TTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA TACCACCACCA CTTCAAGCTTCATGACTATAGATTTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTG TGGCTACTATGTTTCC ] [-] EMBL CF337822 [ ATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATTACCACCACCACCCTCAAGCTTCATGACTATAGA TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGTTTTACTGAGTTCATGACCACCCCTTCNTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTGTTGGCTACTATGTTTCCCAGGTCGCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGGCTTTCCCTGCCATTCTCTGCCGCTT] [-] EMBL CF333050 [ AAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA TACCACCACCA CCTCAAGCTTCATGACTATAGA TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGCTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTGTTGGCTACTATGTTTCCCAGGTCGCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTT AGGCCGCCGGCTTTCCCTGCCA ] consensusID : consensus_14113#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 782 fasta sequence [AAAGCAGCATCGCTTGTAAGCTGAAGATTGAGAAATAGTAACACATTATTGTGAGTTTGCACAGCTTCAGTCCAAGGTACAGTATAAGTATGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT-ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA-TCAGAATC-AGCA-TGAACAACAACTGCCCTTCCC-AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC-TGCAACACCATCTTTGTTGGCTACTATGTTT-CCCAGGTCG-CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG-TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGG] [-] EMBL AK073785 [AAAGCAGCATCGCTTGTAAGCTGAAGATTGAGAAATAGTAACACATTATTGTGAGTTTGCACAGCTTCAGTCCAAGGTACAGTATAAGTATGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC TGCAACACCATCTTTGTTGGCTACTATGTTT CCCAGGTCG CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGG] [-] EMBL AU092604 [ tttTTGAGAAATAGTAACACATTATTGTGAGTTTGCACAGCTTCAGTCCAAGGTACAGTATAAGTATGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC TGCAACACCATCTTTGTTGGCTACTATGTTT CCCAGGTCG CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTTGCAGCCGTTGGTGGTGTC ] [-] EMBL CA755142 [ AACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC TGCAACACCATCTTTGTTGGCTACTATGTTT CCCAGGTCG CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGC ] [-] EMBL C74673 [ CCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATNTCCANATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACTAATAGATTGTTAAACTGCAGATCNAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAG ] [-] EMBL C27673 [ ttcCCTAGGTCATTAAGAATCNAGCATTGAACAACAACTGCCCTTCCCAAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTTGCAACACCATCTTTGTTGGCTACTATGTTTCCCCAGGTCGCCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGNANGCGCC GCGACCGCGCTGTTGCCNGC GCGCCGCCGATG CAGCGACGCCCTTGA GCCGCCGG] consensusID : consensus_14113#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [AGGGACATTCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATT] [+] EMBL CB679877 [AGGGACATTCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14113#2 ------------------------------------------------------------ consensus_14113#3 ------------------------------------------------------------ consensus_14113#0 CCCCCCCTTGGGCCCGGGGGGGGAAAAAAAAACCTTTGGGTCCTCCCCAAAAAGGGGAAA 60 consensus_14113#1 ------------------------------------------------------------ consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 ------------------------------------------------------------ consensus_14113#3 ------------------------------------------------------------ consensus_14113#0 GGGGGTTTTTTTTTTAAGGGGGGAACCCCTAAACCCCCGGGTTAAAAGGGGGGCCAATTT 120 consensus_14113#1 ------------------------------------------------------------ consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 ------------------------------------------------------------ consensus_14113#3 ------------------------------------------------------------ consensus_14113#0 TTGGAAAGGGGAATGGGGGGGGCCTTTTTTTTTTTTTCCCCCCTGGGAAAAAGGGGGTTT 180 consensus_14113#1 ------------------------------------------------------------ consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 ------------------------------------------------------------ consensus_14113#3 ------------------------------------------------------------ consensus_14113#0 TTTCCAAAAGCATTAAATTGGGGGAACCCCGGGTTTTTCCCCCCCCCCCGTTTTTAAAAA 240 consensus_14113#1 ------------------------------------------------------------ consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 ------------------------------------------------------------ consensus_14113#3 ------------------------------------------------------------ consensus_14113#0 CCGGCCCGTTTATTTTTTAAACCCCCCCTTAAAGGGGGATTTTTTTTTTGGGCCCGGAAA 300 consensus_14113#1 ------------------------------------------------------------ consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 ------------------------------------------------------------ consensus_14113#3 ----------------------------------------------------AAAGCAGC 8 consensus_14113#0 TTCCCCCTTTTTAAAAAAAGGGAAAAAAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTT 360 consensus_14113#1 -------------------------------------CAGAGACTGGCAGGGAAAGCCGG 23 consensus_14113#4 ------------------------------------------------AGGGACATTCGG 12 consensus_14113#2 ------TGCAA-CGATACGCTACGTAACGGCATGAC--ATTGTTTTTTTTTTTTTTTTTT 51 consensus_14113#3 ATCGCTTGTAAGCTGAAGATTGAGAAATAGTAACAC--ATTATTGTGAGTTTGCACAGCT 66 consensus_14113#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTTTTTTTTTTTTTTTT 418 consensus_14113#1 CGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGC 83 consensus_14113#4 CGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGC 72 * * consensus_14113#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATAC 111 consensus_14113#3 TCAGTCCAAGGTACAGTATAAGTAT---GAGGAAACTTTTCCTTTATTTATAGAATATAC 123 consensus_14113#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATAC 478 consensus_14113#1 CCTCCACTTCTTCCAGGACCCCTCCACCGGTACGCGTCTCCTCCCTGTAGCTCCGTGCTG 143 consensus_14113#4 CCTCCACTTCTTCCAGGACCCCTCCACCGG------------------------------ 102 * * * consensus_14113#2 TCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTAT-----AAATAA 166 consensus_14113#3 TCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTAT-----AGATAA 178 consensus_14113#0 TCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTAT-----ACATAA 533 consensus_14113#1 TTCACCTGCGCGCACAGCAGCTCGTCTCGTAAGTGAATTGACCTCTTCTCGCTGATGTGA 203 consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 CTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCC 226 consensus_14113#3 CTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCC 238 consensus_14113#0 CTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCC 593 consensus_14113#1 TTTTGGTGGACTACTCGATCTCTGCGTGGTTTTTTAGGGTATACCGAGGTGAGGGG---- 259 consensus_14113#4 --------------------------------------GTATACCGAGGTGAGGGG---- 120 * * * ***** * consensus_14113#2 AATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACTATAGAT 286 consensus_14113#3 AATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACTATAGAT 298 consensus_14113#0 AATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGAT 653 consensus_14113#1 GAGGGTCACCG-GCCTC---GCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCG 315 consensus_14113#4 GAGGGTCACCG-GCCTC---GCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCG 176 * * * ** *** * * ** *** * ** * * ** ** * * consensus_14113#2 TGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCT 346 consensus_14113#3 TGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCT 358 consensus_14113#0 TGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCT 713 consensus_14113#1 ACACCACCAACGGCTGCAACTCTACCGG-GCCCCATTTTAATCCTCACAATAAGTCCCAT 374 consensus_14113#4 ACACCACCAACGGCTGCAACTCTACCGG-GCCCCATTTTAATCCTCACAATAAGTCCCAT 235 * * * * * ** ** * * ** *** * ** * * * * * consensus_14113#2 GTTGTTTTACTGAGTTCATGACCACCCC-----TTCCTAGGTC-----ATCAGAATCAGC 396 consensus_14113#3 GTTGTTTTACTGAGTTCATGACCACCCC-----TTCCTAGGTC-----ATCAGAATCAGC 408 consensus_14113#0 GTTGTTTTACTGAGTTCATGACCACCTTCAAAATATCAAAGTAGTACAATGAGCAGCAGC 773 consensus_14113#1 GGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAAC---ATAGTAGCCAAC 431 consensus_14113#4 GGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAAC---ATAGTAGCCAAC 292 * * * * * ** * * ** ** * consensus_14113#2 ATGAACAACAACTGCCCTTCC---CAATATGGAATG---AGGCCCGCTTA---GTGAAAT 447 consensus_14113#3 ATGAACAACAACTGCCCTTCC---CAATATGGAATG---AGGCCCGCTTA---GTGAAAT 459 consensus_14113#0 ATAAAAAGTGAATGCTTCACCATGTGATACTAAATGGCAAAACATAATTGTGCATGAAAC 833 consensus_14113#1 AAAGATGGTTAGCACTCTGTCAGGCCGTCTACATTA---AGACCTTTGAG---GTGTTGC 485 consensus_14113#4 AAAGATGGT----------------------------------------------GTTGC 306 * * * consensus_14113#2 CTGTAGGTCCTTTATGAAGATA-TCTGCAACACCATCT--TTGTTGGCTACT-----ATG 499 consensus_14113#3 CTGTAGGTCCTTTATGAAGATA-TCTGCAACACCATCT--TTGTTGGCTACT-----ATG 511 consensus_14113#0 CTATTCTAACATTAGGCTCGCAATCCGTAATTTGACTCAACTGATGGATACTTGAGCATG 893 consensus_14113#1 AGATATCTTCATAAAGGACCTA----CAGGTTCCATTGTCTTGAAATATGTAAA---ATA 538 consensus_14113#4 AGATATCTTCATAAAGGACCTA----CAGGTTCCATTGTCTTGAAATATGTAAA---ATA 359 * * * * * * * ** * ** consensus_14113#2 TTTCCCAGGTCGC-CCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGT- 557 consensus_14113#3 TTTCCCAGGTCGC-CCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGT- 569 consensus_14113#0 TATTTTGGAACCTACCACTAGTCAAAGTTAGCCAATTGTTAACAAATGGAACATAGAGTT 953 consensus_14113#1 TCAGTTTGTTCAT-CTTATTGTTTATGCTAATGCATTGGTAATTCATATTCATTGCTTTG 597 consensus_14113#4 TCAGTTTGTTCAT-CTTATTGTTTATGCTAATGCATT----------------------- 395 * * * * ** * * consensus_14113#2 ------GAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGT--GTCGCCAA- 608 consensus_14113#3 ------GAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGT--GTCGCCAA- 620 consensus_14113#0 TGAACAGGAGAGAAAAATATTATACCAAAATATTTCATACTTAAATAATTGGACACAAAC 1013 consensus_14113#1 TGAAGATTTCACTAAGCGGGCCTCATTCCATATTGGGAAGGGCAGTTGTTGTTCATGCTG 657 consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 -----------AGGAGTGGATGTG--GAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACC 655 consensus_14113#3 -----------AGGAGTGGATGTG--GAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACC 667 consensus_14113#0 AGATGTTGTTCAGAATTGAGTATGACGCAGTTATTGATGGTAATGGCAAGAGCTTT-ATC 1072 consensus_14113#1 ATTCTGATGACCTANGAAGGGGTAA-GCATTATGTCATTACTCTTGCAAGATTGTTATTG 716 consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 CTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAG----TGGAGGGCGCC 711 consensus_14113#3 CTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAG----TGGAGGGCGCC 723 consensus_14113#0 ATCCCAACTCCTAGGACATGTCTTGCACAAATAATGTATAAAAAGGCCTCTGGAGGCACT 1132 consensus_14113#1 GTCATTCAGAATTGAAGAGAAGTCTCCCTTCCTACATTATATATGTCCTCTTATTTTAGA 776 consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 GGCGACCGCGCTGTTGCCGCCG-GCGCCGCCGATGAGGGCGACGCCCTTGA----GGCCG 766 consensus_14113#3 GGCGACCGCGCTGTTGCCGCCG-GCGCCGCCGATGAGGGCGACGCCCTTGA----GGCCG 778 consensus_14113#0 GAAAATAA--TTGGCAAAACAATGCAGCATAGATAGTGCCAGAATCCTAGATCTAGATTG 1190 consensus_14113#1 AAATATTGAATTCACTATTTAGAGGGTAATTTAGAGCTTATTACCTGCTGAA-TGGCGTG 835 consensus_14113#4 ------------------------------------------------------------ consensus_14113#2 CCGGCTTTCCCTGCCATTCTCTGCCGCTT------- 795 consensus_14113#3 CCGG-------------------------------- 782 consensus_14113#0 CTAGAAATGTATTTCTTAAGGCACCACAGTAACATT 1226 consensus_14113#1 CTAT-------------------------------- 839 consensus_14113#4 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||