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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14113#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1226 fasta sequence
[CCCCCCCTTGGGCCCGGGGGGGGAAAAAAAAACCTTTGGGTCCTCCCCAAAAAGGGGAAAGGGGGTTTTTTTTTTAAGGGGGGAACCCCTAAACCCCCGGGTTAAAAGGGGGGCCAATTTTTGGAAAGGGGAATGGGGGGGGCCTTTTTTTTTTTTTCCCCCCTGGGAAAAAGGGGGTTTTTTCCAAAAGCATTAAATTGGGGGAACCCCGGGTTTTTCCCCCCCCCCCGTTTTTAAAAACCGGCCCGTTTATTTTTTAAACCCCCCCTTAAAGGGGGATTTTTTTTTTGGGCCCGGAAATTCCCCCTTTTTAAAAAAAGGGAAAAAAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT---GAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCTTCAAAATATCAAAGTAGTACAATGAGCAGCAGCATAAAAAGTGAATGCTTCACCATGTGATACTAAATGGCAAAACATAATTGTGCATGAAACCTATTCTAACATTAGGCTCGCAATCCGTAATTTGACTCAACTGATGGATACTTGAGCATGTATTTTGGAACCTACCACTAGTCAAAGTTAGCCAATTGTTAACAAATGGAACATAGAGTTTGAACAGGAGAGAAAAATATTATACCAAAATATTTCATACTTAAATAATTGGACACAAACAGATGTTGTTCAGAATTGAGTATGACGCAGTTATTGATGGTAATGGCAAGAGCTTTATCATCCCAACTCCTAGGACATGTCTTGCACAAATAATGTATAAAAAGGCCTCTGGAGGCACTGAAAATAATTGGCAAAACAATGCAGCATAGATAGTGCCAGAATCCTAGATCTAGATTGCTAGAAATGTATTTCTTAAGGCACCACAGTAACATT]
[-] EMBL CF337509 [CCCCCCCTTGGGCCCGGGGGGGGAAAAAAAAACCTTTGGGTCCTCCCCAAAAAGGGGAAAGGGGGTTTTTTTTTTAAGGGGGGAACCCCTAAACCCCCGGGTTAAAAGGGGGGCCAATTTTTGGAAAGGGGAATGGGGGGGGCCTTTTTTTTTTTTTCCCCCCTGGGAAAAAGGGGGTTTTTTCCAAAAGCATTAAATTGGGGGAACCCCGGGTTTTTCCCCCCCCCCCGTTTTTAAAAACCGGCCCGTTTATTTTTTAAACCCCCCCTTAAAGGGGGATTTTTTTTTTGGGCCCGGAAATTCCCCCTTTTTAAAAAAAGGGAAAAAAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAA ]
[+] EMBL CB625946 [ tcTTTTTTTTTTTTTTT GAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCTTCAAAATATCAAAGTAGTACAATGAGCAGCAGCATAAAAAGTGAATGCTTCACCATGTGATACTAAATGGCAAAACATAATTGTGCATGAAACCTATTCTAACATTAGGCTCGCAATCCGTAATTTGACTCAACTGATGGATACTTGAGCATGTATTTTGGAACCTACCACTAGTCAAAGTTAGCCAATTGTTAACAAATGGAACATAGAGTTTGAACAGGAGAGAAAAATATTATACCAAAATATTTCATACTTAAATAATTGGACACAAACAGATGTTGTTCAGAATTGAGTATGACGCAGTTATTGATGGTAATGGCAAGAGCTTTATCATCCCAACTCCTAGGACATGTCTTGCACAAATAATGTATAAAAAGGCCTCTGGAGGCACTGAAAATAATTGGCAAAACAATGCAGCATAGATAGTGCCAGAATCCTAGATCTAGATTGCTAGAAATGTATTTCTTAAGGCACCACAGTAACATT]
[-] EMBL BI796951 [ TTTTTAT GAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTC ]
consensusID : consensus_14113#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 839 fasta sequence
[CAGAGACTGGCAGGGAAAGCCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGTACGCGTCTCCTCCCTGTAGCTCCGTGCTGTTCACCTGCGCGCACAGCAGCTCGTCTCGTAAGTGAATTGACCTCTTCTCGCTGATGTGATTTTGGTGGACTACTCGATCTCTGCGTGGTTTTTTAGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTTAGCACTCTGTCAGGCCGTCTACATTAAGACCTTTGAGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATTGGTAATTCATATTCATTGCTTTGTGAAGATTTCACTAAGCGGGCCTCATTCCATATTGGGAAGGGCAGTTGTTGTTCATGCTGATTCTGATGACCTANGAAGGGGTAAGCATTATGTCATTACTCTTGCAAGATTGTTATTGGTCATTCAGAATTGAAGAGAAGTCTCCCTTCCTACATTATATATGTCCTCTTATTTTAGAAAATATTGAATTCACTATTTAGAGGGTAATTTAGAGCTTATTACCTGCTGAATGGCGTGCTAT]
[+] EMBL CB625945 [CAGAGACTGGCAGGGAAAGCCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGTACGCGTCTCCTCCCTGTAGCTCCGTGCTGTTCACCTGCGCGCACAGCAGCTCGTCTCGTAAGTGAATTGACCTCTTCTCGCTGATGTGATTTTGGTGGACTACTCGATCTCTGCGTGGTTTTTTAGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTTAGCACTCTGTCAGGCCGTCTACATTAAGACCTTTGAGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATTGGTAATTCATATTCATTGCTTTGTGAAGATTTCACTAAGCGGGCCTCATTCCATATTGGGAAGGGCAGTTGTTGTTCATGCTGATTCTGATGACCTANGAAGGGGTAAGCATTATGTCATTACTCTTGCAAGATTGTTATTGGTCATTCAGAATTGAAGAGAAGTCTCCCTTCCTACATTATATATGTCCTCTTATTTTAGAAAATATTGAATTCACTATTTAGAGGGTAATTTAGAGCTTATTACCTGCTGAATGGCGTGCTAT]
consensusID : consensus_14113#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 795 fasta sequence
[TGCAACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAAATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA-TACCACCACCA-CCTCAAGCTTCATGACTATAGA-TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC-TGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTGTTGGCTACTATGTTTCCCAGGTCGCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGGCTTTCCCTGCCATTCTCTGCCGCTT]
[+] EMBL CF333049 [TGCAACGATACGCTACGTAACGGCATGACATTGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATGAGGAAACTTTTCCTTTATTTATAAAATATACTCCGTATGTTCGTTCAAAAAAAAAATATACTCCGTAACAAAGTACGTTTAAATAACTGAAGGCAGGGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCCCCAATGATTTCCATATTTTTGAACAGCA TACCACCACCA CCTCAAGCTTCATGACTATAAA TTGTTAAACTGCAAATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGCTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAAAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAATGAAATCTGTAGGT ]
[-] EMBL AU058267 [ TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA TACCACCACCA CCTCAAGCTTCATGACTATAGA TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTCGGa ]
[-] EMBL BI807915 [ TTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATACATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA TACCACCACCA CTTCAAGCTTCATGACTATAGATTTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTG TGGCTACTATGTTTCC ]
[-] EMBL CF337822 [ ATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATTACCACCACCACCCTCAAGCTTCATGACTATAGA TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGTTTTACTGAGTTCATGACCACCCCTTCNTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTGTTGGCTACTATGTTTCCCAGGTCGCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGGCTTTCCCTGCCATTCTCTGCCGCTT]
[-] EMBL CF333050 [ AAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCA TACCACCACCA CCTCAAGCTTCATGACTATAGA TTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCC TGTTGCTTTACTGAGTTCATGACCACCCCTTCCTAGGTCATCAGAATCAGCATGAACAACAACTGCCCTTCCCAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTGCAACACCATCTTTGTTGGCTACTATGTTTCCCAGGTCGCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTT AGGCCGCCGGCTTTCCCTGCCA ]
consensusID : consensus_14113#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 782 fasta sequence
[AAAGCAGCATCGCTTGTAAGCTGAAGATTGAGAAATAGTAACACATTATTGTGAGTTTGCACAGCTTCAGTCCAAGGTACAGTATAAGTATGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT-ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA-TCAGAATC-AGCA-TGAACAACAACTGCCCTTCCC-AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC-TGCAACACCATCTTTGTTGGCTACTATGTTT-CCCAGGTCG-CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG-TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGG]
[-] EMBL AK073785 [AAAGCAGCATCGCTTGTAAGCTGAAGATTGAGAAATAGTAACACATTATTGTGAGTTTGCACAGCTTCAGTCCAAGGTACAGTATAAGTATGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC TGCAACACCATCTTTGTTGGCTACTATGTTT CCCAGGTCG CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGCCGG]
[-] EMBL AU092604 [ tttTTGAGAAATAGTAACACATTATTGTGAGTTTGCACAGCTTCAGTCCAAGGTACAGTATAAGTATGAGGAAACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC TGCAACACCATCTTTGTTGGCTACTATGTTT CCCAGGTCG CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAGTTTGCAGCCGTTGGTGGTGTC ]
[-] EMBL CA755142 [ AACTTTTCCTTTATTTATAGAATATACTCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTATAGATAACTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACT ATAGATTGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATC TGCAACACCATCTTTGTTGGCTACTATGTTT CCCAGGTCG CCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGAGGGCGCCGGCGACCGCGCTGTTGCCGCCGGCGCCGCCGATGAGGGCGACGCCCTTGAGGCCGC ]
[-] EMBL C74673 [ CCATTCTTGAAACAGTCTGGAATGAGGAGCGCCAATGATNTCCANATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACTAATAGATTGTTAAACTGCAGATCNAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCTGTTGTTTTACTGAGTTCATGACCACCCCTTCCTAGGTCA TCAGAATC AGCA TGAACAACAACTGCCCTTCCC AATATGGAATGAGGCCCGCTTAG ]
[-] EMBL C27673 [ ttcCCTAGGTCATTAAGAATCNAGCATTGAACAACAACTGCCCTTCCCAAATATGGAATGAGGCCCGCTTAGTGAAATCTGTAGGTCCTTTATGAAGATATCTTGCAACACCATCTTTGTTGGCTACTATGTTTCCCCAGGTCGCCCCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGTGAGGATTAAAATGGGGCCCGGTAGAG TTGCAGCCGTTGGTGGTGTCGCCAAAGGAGTGGATGTGGAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACCCTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAGTGGNANGCGCC GCGACCGCGCTGTTGCCNGC GCGCCGCCGATG CAGCGACGCCCTTGA GCCGCCGG]
consensusID : consensus_14113#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence
[AGGGACATTCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATT]
[+] EMBL CB679877 [AGGGACATTCGGCGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGCCCTCCACTTCTTCCAGGACCCCTCCACCGGGTATACCGAGGTGAGGGGGAGGGTCACCGGCCTCGCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCGACACCACCAACGGCTGCAACTCTACCGGGCCCCATTTTAATCCTCACAATAAGTCCCATGGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAACATAGTAGCCAACAAAGATGGTGTTGCAGATATCTTCATAAAGGACCTACAGGTTCCATTGTCTTGAAATATGTAAAATATCAGTTTGTTCATCTTATTGTTTATGCTAATGCATT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14113#2 ------------------------------------------------------------
consensus_14113#3 ------------------------------------------------------------
consensus_14113#0 CCCCCCCTTGGGCCCGGGGGGGGAAAAAAAAACCTTTGGGTCCTCCCCAAAAAGGGGAAA 60
consensus_14113#1 ------------------------------------------------------------
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 ------------------------------------------------------------
consensus_14113#3 ------------------------------------------------------------
consensus_14113#0 GGGGGTTTTTTTTTTAAGGGGGGAACCCCTAAACCCCCGGGTTAAAAGGGGGGCCAATTT 120
consensus_14113#1 ------------------------------------------------------------
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 ------------------------------------------------------------
consensus_14113#3 ------------------------------------------------------------
consensus_14113#0 TTGGAAAGGGGAATGGGGGGGGCCTTTTTTTTTTTTTCCCCCCTGGGAAAAAGGGGGTTT 180
consensus_14113#1 ------------------------------------------------------------
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 ------------------------------------------------------------
consensus_14113#3 ------------------------------------------------------------
consensus_14113#0 TTTCCAAAAGCATTAAATTGGGGGAACCCCGGGTTTTTCCCCCCCCCCCGTTTTTAAAAA 240
consensus_14113#1 ------------------------------------------------------------
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 ------------------------------------------------------------
consensus_14113#3 ------------------------------------------------------------
consensus_14113#0 CCGGCCCGTTTATTTTTTAAACCCCCCCTTAAAGGGGGATTTTTTTTTTGGGCCCGGAAA 300
consensus_14113#1 ------------------------------------------------------------
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 ------------------------------------------------------------
consensus_14113#3 ----------------------------------------------------AAAGCAGC 8
consensus_14113#0 TTCCCCCTTTTTAAAAAAAGGGAAAAAAAGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTT 360
consensus_14113#1 -------------------------------------CAGAGACTGGCAGGGAAAGCCGG 23
consensus_14113#4 ------------------------------------------------AGGGACATTCGG 12
consensus_14113#2 ------TGCAA-CGATACGCTACGTAACGGCATGAC--ATTGTTTTTTTTTTTTTTTTTT 51
consensus_14113#3 ATCGCTTGTAAGCTGAAGATTGAGAAATAGTAACAC--ATTATTGTGAGTTTGCACAGCT 66
consensus_14113#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT--TTTTTTTTTTTTTTTTTTTTTT 418
consensus_14113#1 CGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGC 83
consensus_14113#4 CGGCCTCAAGGGCGTCGCCCTCATCGGCGGCGCCGGCGGCAACAGCGCGGTCGCCGGCGC 72
* *
consensus_14113#2 TTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATAC 111
consensus_14113#3 TCAGTCCAAGGTACAGTATAAGTAT---GAGGAAACTTTTCCTTTATTTATAGAATATAC 123
consensus_14113#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTGAGGAAACTTTTCCTTTATTTATAGAATATAC 478
consensus_14113#1 CCTCCACTTCTTCCAGGACCCCTCCACCGGTACGCGTCTCCTCCCTGTAGCTCCGTGCTG 143
consensus_14113#4 CCTCCACTTCTTCCAGGACCCCTCCACCGG------------------------------ 102
* * *
consensus_14113#2 TCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTAT-----AAATAA 166
consensus_14113#3 TCCGTATGTTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTAT-----AGATAA 178
consensus_14113#0 TCCGTATGCTCGTTCAAAAAAAGAATATACTCCGTAACAAAGTACGTAT-----ACATAA 533
consensus_14113#1 TTCACCTGCGCGCACAGCAGCTCGTCTCGTAAGTGAATTGACCTCTTCTCGCTGATGTGA 203
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 CTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCC 226
consensus_14113#3 CTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCC 238
consensus_14113#0 CTGAAGGCAGTGATAACACGTCAAAAGCCATTCTTGAAACAGTCTGGAATGAGGAGCGCC 593
consensus_14113#1 TTTTGGTGGACTACTCGATCTCTGCGTGGTTTTTTAGGGTATACCGAGGTGAGGGG---- 259
consensus_14113#4 --------------------------------------GTATACCGAGGTGAGGGG---- 120
* * * ***** *
consensus_14113#2 AATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACTATAGAT 286
consensus_14113#3 AATGATTTCCATATCTCTGAACAGCATACCACCACCACCTCAAGCTTCATGACTATAGAT 298
consensus_14113#0 AATGATTTCCATATCTCTGAACAGCATACCACCACCACTTCAAGCTTCATGACTATAGAT 653
consensus_14113#1 GAGGGTCACCG-GCCTC---GCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCG 315
consensus_14113#4 GAGGGTCACCG-GCCTC---GCTCCGGGCCTCCATGGCTTCCACATCCACTCCTTTGGCG 176
* * * ** *** * * ** *** * ** * * ** ** * *
consensus_14113#2 TGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCT 346
consensus_14113#3 TGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCT 358
consensus_14113#0 TGTTAAACTGCAGATCGAAGTCCAATGATACCGCATCCAATTCTTGCTCCTGCATTTCCT 713
consensus_14113#1 ACACCACCAACGGCTGCAACTCTACCGG-GCCCCATTTTAATCCTCACAATAAGTCCCAT 374
consensus_14113#4 ACACCACCAACGGCTGCAACTCTACCGG-GCCCCATTTTAATCCTCACAATAAGTCCCAT 235
* * * * * ** ** * * ** *** * ** * * * * *
consensus_14113#2 GTTGTTTTACTGAGTTCATGACCACCCC-----TTCCTAGGTC-----ATCAGAATCAGC 396
consensus_14113#3 GTTGTTTTACTGAGTTCATGACCACCCC-----TTCCTAGGTC-----ATCAGAATCAGC 408
consensus_14113#0 GTTGTTTTACTGAGTTCATGACCACCTTCAAAATATCAAAGTAGTACAATGAGCAGCAGC 773
consensus_14113#1 GGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAAC---ATAGTAGCCAAC 431
consensus_14113#4 GGGGCACCATCTGATGATGAAAGACATGTGGGCGACCTGGGAAAC---ATAGTAGCCAAC 292
* * * * * ** * * ** ** *
consensus_14113#2 ATGAACAACAACTGCCCTTCC---CAATATGGAATG---AGGCCCGCTTA---GTGAAAT 447
consensus_14113#3 ATGAACAACAACTGCCCTTCC---CAATATGGAATG---AGGCCCGCTTA---GTGAAAT 459
consensus_14113#0 ATAAAAAGTGAATGCTTCACCATGTGATACTAAATGGCAAAACATAATTGTGCATGAAAC 833
consensus_14113#1 AAAGATGGTTAGCACTCTGTCAGGCCGTCTACATTA---AGACCTTTGAG---GTGTTGC 485
consensus_14113#4 AAAGATGGT----------------------------------------------GTTGC 306
* * *
consensus_14113#2 CTGTAGGTCCTTTATGAAGATA-TCTGCAACACCATCT--TTGTTGGCTACT-----ATG 499
consensus_14113#3 CTGTAGGTCCTTTATGAAGATA-TCTGCAACACCATCT--TTGTTGGCTACT-----ATG 511
consensus_14113#0 CTATTCTAACATTAGGCTCGCAATCCGTAATTTGACTCAACTGATGGATACTTGAGCATG 893
consensus_14113#1 AGATATCTTCATAAAGGACCTA----CAGGTTCCATTGTCTTGAAATATGTAAA---ATA 538
consensus_14113#4 AGATATCTTCATAAAGGACCTA----CAGGTTCCATTGTCTTGAAATATGTAAA---ATA 359
* * * * * * * ** * **
consensus_14113#2 TTTCCCAGGTCGC-CCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGT- 557
consensus_14113#3 TTTCCCAGGTCGC-CCACATGTCTTTCATCATCAGATGGTGCCCCATGGGACTTATTGT- 569
consensus_14113#0 TATTTTGGAACCTACCACTAGTCAAAGTTAGCCAATTGTTAACAAATGGAACATAGAGTT 953
consensus_14113#1 TCAGTTTGTTCAT-CTTATTGTTTATGCTAATGCATTGGTAATTCATATTCATTGCTTTG 597
consensus_14113#4 TCAGTTTGTTCAT-CTTATTGTTTATGCTAATGCATT----------------------- 395
* * * * ** * *
consensus_14113#2 ------GAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGT--GTCGCCAA- 608
consensus_14113#3 ------GAGGATTAAAATGGGGCCCGGTAGAGTTGCAGCCGTTGGTGGT--GTCGCCAA- 620
consensus_14113#0 TGAACAGGAGAGAAAAATATTATACCAAAATATTTCATACTTAAATAATTGGACACAAAC 1013
consensus_14113#1 TGAAGATTTCACTAAGCGGGCCTCATTCCATATTGGGAAGGGCAGTTGTTGTTCATGCTG 657
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 -----------AGGAGTGGATGTG--GAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACC 655
consensus_14113#3 -----------AGGAGTGGATGTG--GAAGCCATGGAGGCCCGGAGCGAGGCCGGTGACC 667
consensus_14113#0 AGATGTTGTTCAGAATTGAGTATGACGCAGTTATTGATGGTAATGGCAAGAGCTTT-ATC 1072
consensus_14113#1 ATTCTGATGACCTANGAAGGGGTAA-GCATTATGTCATTACTCTTGCAAGATTGTTATTG 716
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 CTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAG----TGGAGGGCGCC 711
consensus_14113#3 CTCCCCCTCACCTCGGTATACCCGGTGGAGGGGTCCTGGAAGAAG----TGGAGGGCGCC 723
consensus_14113#0 ATCCCAACTCCTAGGACATGTCTTGCACAAATAATGTATAAAAAGGCCTCTGGAGGCACT 1132
consensus_14113#1 GTCATTCAGAATTGAAGAGAAGTCTCCCTTCCTACATTATATATGTCCTCTTATTTTAGA 776
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 GGCGACCGCGCTGTTGCCGCCG-GCGCCGCCGATGAGGGCGACGCCCTTGA----GGCCG 766
consensus_14113#3 GGCGACCGCGCTGTTGCCGCCG-GCGCCGCCGATGAGGGCGACGCCCTTGA----GGCCG 778
consensus_14113#0 GAAAATAA--TTGGCAAAACAATGCAGCATAGATAGTGCCAGAATCCTAGATCTAGATTG 1190
consensus_14113#1 AAATATTGAATTCACTATTTAGAGGGTAATTTAGAGCTTATTACCTGCTGAA-TGGCGTG 835
consensus_14113#4 ------------------------------------------------------------
consensus_14113#2 CCGGCTTTCCCTGCCATTCTCTGCCGCTT------- 795
consensus_14113#3 CCGG-------------------------------- 782
consensus_14113#0 CTAGAAATGTATTTCTTAAGGCACCACAGTAACATT 1226
consensus_14113#1 CTAT-------------------------------- 839
consensus_14113#4 ------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||