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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14128#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 11 consensus length = 1816 fasta sequence
[AGATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGTCGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCCCCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGAAGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTCGGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCTCGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTCCTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT-GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAATGCAAATTTTACTGTATTAAAAAAATACCACTATT]
[+] EMBL AK121202 [AGATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGTCGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCCCCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGAAGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTCGGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCTCGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTCCTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCC GGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCAAGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCATGCCATTGCAAATTTTACTGTATTAAAAAAATACCACTATT]
[+] EMBL AK060965 [ GATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGTCGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCCCCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGAAGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTCGGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCTCGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTCCTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGTTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAAT ]
[+] EMBL CB645781 [ GCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGATGATGAAGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCAAGCGCCGCCGTAATGGCTGCCTGGGTCGTGACGCCGCCGGCG ]
[+] EMBL CB679661 [ GCTGCCGTTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGACGCCCGACTGGGTCCTCTCCTAATCTGTCCACCACTGGGCCGACACCTCCGCC ]
[+] EMBL CB637498 [ GTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACAGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCG ]
[+] EMBL CB664714 [ GTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCTCCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTCCACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGCGCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCG ]
[-] EMBL CB637499 [ CTCGCCGACGGCGCCGAGTCCACCAACGACGTCCCCGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGACTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTGGGTCATCGCCGACTCGTTCCACCANTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCCATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGCGACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGCAAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCGGG ]
[-] EMBL CB684061 [ CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTAT ]
[-] EMBL CB664715 [ TGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGCGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTAAGGGATTTTGGATCATGCCATTGCAAATTTATTGT ]
[-] EMBL CF302902 [ TCTTGGGCCCATGGATT GTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAAa ]
[+] EMBL CF302903 [ CTTGGGCCCATGGATTAGAAACCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAATTATTATAAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTAC TACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCATGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAA ]
consensusID : consensus_14128#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 642 fasta sequence
[ATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGGGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATTGATGAGTTCATACACCAGCTTAGGTTAAGCTTTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGGGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTCTTAAGGATGTA]
[-] EMBL CB645782 [ATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGCTGGGAGAGGTGGTCGCCGACGAGGAGCTCCATGAGAGGTACATTGATGAGTTCATACACCAGCTTAGGTTAAGCTTTCCTACGTACCTCGCCAGCTCATGAATGAACCCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATAATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATGTTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAGAAATATTAAAATGACTTACATTGGGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTCTTAAGGATGTA]
consensusID : consensus_14128#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence
[CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGATGCGAGAGGTGGTCGCCGACGAGGAGCTCCATCAGCGGTAGTTGGCGCACGTGGCGCCCAGGAAGTGGGT]
[-] EMBL CB684060 [CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCAGGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACTGGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGGGATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGCGCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTCCTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAGGAAGGTGTTCGTCGCCAACGCCCTCAAGATGCGAGAGGTGGTCGCCGACGAGGAGCTCCATCAGCGGTAGTTGGCGCACGTGGCGCCCAGGAAGTGGGT]
consensusID : consensus_14128#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence
[ATTGTAGACGAAGAAACAAGGAAGGTGTTNNTCGCCAACGCCTTAAGATGCGAGAGGTGGTCGCCGACNAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCCTCTTGGGCCCATGGATTTTAATCCCTACAAATAATAATGTCCTTCCTCCTTTCAGATATAAGTCATTTTAGTTTTTGCCAATATATTGGATGTTATAATTVGGTGGTTTTTTTT]
[+] EMBL OS38064 [ATTGTAGACGAAGAAACAAGGAAGGTGTTNNTCGCCAACGCCTTAAGATGCGAGAGGTGGTCGCCGACNAGGAGCTCCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCTCGCCAGCTCATGAATGAACCCCCTCTTGGGCCCATGGATTTTAATCCCTACAAATAATAATGTCCTTCCTCCTTTCAGATATAAGTCATTTTAGTTTTTGCCAATATATTGGATGTTATAATTVGGTGGTTTTTTTT]
consensusID : consensus_14128#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 248 fasta sequence
[TAAAAAATGACCTGTTAACACTGTGGTTGAAACCGCGAGGGGACGTTACCGTTACCGTACGTACGTGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACAGGCANGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCATCCTTCCAAATTTTACCGTATTAAAAAAATACCACTATTATTTTGATTTCTTGAGGGGAAAAAAAAAAAAA]
[+] EMBL BQ906526 [TAAAAAATGACCTGTTAACACTGTGGTTGAAACCGCGAGGGGACGTTACCGTTACCGTACGTACGTGTGTGTATGTGTGTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACAGGCANGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCATCCTTCCAAATTTTACCGTATTAAAAAAATACCACTATTATTTTGATTTCTTGAGGGGAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 AGATGGGTCGCCGCCGCTGCGGGTTGTGATCTTCCCGTGGCTGGCGTTCGGGCACCTGCT 60
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CCCGTACATGGAGCTCGCGGAGCGCATGGCGTCGAGGGGCCACCACGTGTCCTTCGTCTC 120
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CACGCCGCGGAACATCGCGCGCCTCCCGGCGCCGGTGGCGTCGGCGGTGGAGCTCGTGGC 180
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 GCTGCCGCTCCCGCGGGTGGACGGCCTCGCCGACGGCGCCGAGTCCACCAACGACGTCCC 240
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CGACGACGAGCAGGGGCTCCTCATGGAGGCCTTCGACGGCCTCGCCGCTCCTTTCGCCGA 300
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CTTCCTGGCCGCCGCGTGCGCCGACGACGGCGGCGGCGGAAGGAGGAGGAGGCCCGACTG 360
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 GGTCATCGCCGACTCGTTCCACCACTGGGCCGCCCCCGCCGCCGCCCGGCACGGGGTGCC 420
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 ATGCGTGGCCCTCCTCCCGAGCGCCGCCGTCATGGCTGCGTGGGTCGTCCCGCCGCCGGC 480
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 GACGTCGTCGCCGTCACCGGCGGCGGCTATGCCCAGCTACGAGTGGGAGAAGCTCAAGGC 540
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 AAGCTTCCTCGCCGCCACCAGCCATGGCGCGTCGTCGTCGGCGTCGGGCGGCATGTCGCG 600
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 GGCGACGCGCTGCTCCCTGACGCTCGAGAGGTGCACGCTGGCGGCCATGCGGAGCTGCGT 660
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CGAGTGGGAGCCCGAGCCGTTCCGGGCGGTGGCCGCGGGGCTCGGCAAGCCGCTCGTCCC 720
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CCTCGGCCTCCTCCCGCCATCGCCCGCCGGATCCCGCCGCCGCCGCGCCGTCGCCGGAGA 780
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 AGAAGACGACGACTCCACCAACCCCCTCCTCCGCTGGCTGGACGCCCAGCCGCCCAGCTC 840
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 GGTGCTGTACGTCGCGCTGGGGAGCGAGGTGCCACTGCGCGTCGACCAGGTGCACGAGCT 900
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CGCCCTCGGCCTGGAGCTCGCCGGCGCGCGCTTCCTCTGGGCTCTCAGAAAGCCCCGCTC 960
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 --------------------------CCGCCGCCGCCGCCATCCTCCCTCCCGGNTTCCA 34
consensus_14128#0 CTCCTCCGCCGCCTCCGCCGCCGCCGCCGCCGCCGCCGCCATCCTCCCTCCCGGCTTCCA 1020
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 -------------------------------------------------------ATACT 5
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 GGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACT 94
consensus_14128#0 GGAACGCACGGCGAGCCGCGGCGTGGTCACCATGGGCTGGGCGCCGCAGATCGCCATACT 1080
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 GGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGG 65
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 GGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGG 154
consensus_14128#0 GGAGCACGCCGCCGTGGGCGCGTTCCTGACGCACTGCGGCCGGAACTCGCTGGTGGAGGG 1140
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 GATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGC 125
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 GATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGC 214
consensus_14128#0 GATCTCCGCCGGGAACCCCCTCGTCATGCTCCCCATCGCCGGCGACCAGGGCCCCAACGC 1200
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 GCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTC 185
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 GCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTC 274
consensus_14128#0 GCGCCTCATGGAGGCGAGGAAGGTGGGGCTGCAGGTGGCGAGGGATGGCGCAGACGGCTC 1260
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 CTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAG 245
consensus_14128#3 ----------------------------------------ATTGTAGACGAAGAAACAAG 20
consensus_14128#2 CTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAG 334
consensus_14128#0 CTTCGACCGCCACGGCGTCGCCGCCGCGGTCCGGGCCGCCATTGTAGACGAAGAAACAAG 1320
consensus_14128#4 ---------------------TAAAAAATGACCTGTTAACACTGTGGTTGAAACCGCGAG 39
* *** * *** * **
consensus_14128#1 GAAG-GTGTTCGTCGCCA-ACGCCCTCAAG-CTGGGAGAGGTGGTCGCCGACGAGGAGCT 302
consensus_14128#3 GAAG-GTGTTNNTCGCCA-ACGCC-TTAAG-ATGCGAGAGGTGGTCGCCGACNAGGAGCT 76
consensus_14128#2 GAAG-GTGTTCGTCGCCA-ACGCCCTCAAG-ATGCGAGAGGTGGTCGCCGACGAGGAGCT 391
consensus_14128#0 GAAG-GTGTTCGTCGCCA-ACGCCCTCAAG-CTGCGAGAGGTGGTCGCCGACGAGGAGCT 1377
consensus_14128#4 GGGACGTTACCGTTACCGTACGTACGTGTGTGTATGTGTGTCTGTCTGTCATTTTGGATC 99
* ** * ** *** * * * * * *** * *
consensus_14128#1 CCATGAGAGGTACATTGATGAGTTCATACACCAGCTTAGGTTAAGCTTTCCTACGTACCT 362
consensus_14128#3 CCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCT 136
consensus_14128#2 CCATCAGCGGTA-GTTGGCG----CACGTGGCGCCCAGGAAGTGGGT------------- 433
consensus_14128#0 CCATGAGAGGTACATCGACGAGTTCATACACCAGCTTAGGTTAAGCTCTCCTACGTACCT 1437
consensus_14128#4 ATGCCATTGCAAATTTATTGTATTAAAAAAATA--CAGGCANGTACGTACGTACGTGTGT 157
* * * * * * *
consensus_14128#1 CGCCAGCTCATGAATGAAC-CCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATA 421
consensus_14128#3 CGCCAGCTCATGAATGAAC-CCCCTCTTGGGCCCATGGATTTTAATCCCTACAAATAATA 195
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 CGCCAGCTCATGAATGAAC-CCCGTCTTGGGCCCATGGATTGTAATCCCTACAAATAATA 1496
consensus_14128#4 CTGTCGGTCATTTTGGATCATCCTTCCAAATTTTACCGTATTAAAAAAATACCACTATTA 217
consensus_14128#1 ATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATG 481
consensus_14128#3 ATGTCCTTCCTCC-TTTCAGA-TATAAGTCATTTTAGTTTTTGCCA-ATATAT-TGGATG 251
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 ATGTCCTTCCTCCGTTTCAGAATATAAGTCATTTTAGTATTTTCCACATATATATTGATG 1556
consensus_14128#4 TTTTGATTTCTTGAGGGGAAAAAAAAAAAAA----------------------------- 248
consensus_14128#1 TTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAG 541
consensus_14128#3 TTA-TAA--TTVGGTGGTTTTTTTT----------------------------------- 273
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 TTAATAAATCTAGATAGATATATATATGTCTAGATTCATTAACATCAATATAAATATGAG 1616
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 AAATATTAAAATGACTTACATTGGGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGT 601
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 AAATATTAAAATGACTTACATTGTGAAACAGAGGGAGTACGTACGTACGTGTGTATGTGT 1676
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 GTCTGTCTGTCATTTTGGATCATGCCATTCTTAAGGATGTA------------------- 642
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 GTCTGTCTGTCATTTTGGATCATGCCATTGCAAATTTATTGTATTAAAAAAATACATGCA 1736
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 ------------------------------------------------------------
consensus_14128#3 ------------------------------------------------------------
consensus_14128#2 ------------------------------------------------------------
consensus_14128#0 TGTACGTACGTACGTGTGTCTGTCGGTCATTTTGGATCAAAAAAATGCAAATTTTACTGT 1796
consensus_14128#4 ------------------------------------------------------------
consensus_14128#1 --------------------
consensus_14128#3 --------------------
consensus_14128#2 --------------------
consensus_14128#0 ATTAAAAAAATACCACTATT 1816
consensus_14128#4 --------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||