These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_1413#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [GAGAGCCCCGAGGCGGTGGCGGCGGAGCTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCGGAGGCCGCGGCCGGCGGCGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATCGAGTGGCCGGCGCCCGGGAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTCTTCGCCGGCCGGGGACTCCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATAGGCGGAAGGCCTACCTTTCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGAGCAGTTCCAATTGGATGAAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAGGTGCTATGCTGATGTGATGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTTAAACTCCACCTC] [+] EMBL CF326363 [GAGAGCCCCGAGGCGGTGGCGGCGGAGCTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCGGAGGCCGCGGCCGGCGGCGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATCGAGTGGCCGGCGCCCGGGAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTCTTCGCCGGCCGGGGACTCCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATAGGCGGAAGGCCTACCTTTCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGAGCAGTTCCAATTGGATGAAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAGGTGCTATGCTGATGTGATGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTTAAACTCCACCTC] consensusID : consensus_1413#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 352 fasta sequence [GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGCAGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGGGGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAGCAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGGGAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA] [+] EMBL AU075823 [GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGCAGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGGGGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAGCAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGGGAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCTGCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_1413#0 ------------------------------------------------------------ consensus_1413#1 GCGGCTCCAAGTCCAAGGGCGCAAGAGCGGAGGAGAACAAGAAGGGGCAAGAGCAGGAGC 60 consensus_1413#0 -----------------------------------GAGAGCCCCGAGGCGGTGGCGGCGG 25 consensus_1413#1 AGCAGGAGGCGTCCATGACGGTGGTGGACGGCGCAGAGGAGGCCGGGAAGGAGGAGGAGG 120 *** *** * ** ** ** ** consensus_1413#0 AG--------CTGAAGGAGGTGCTGCGGGCGCGGAAGGAGGCGGAGGCCGCGGCCGGCGG 77 consensus_1413#1 GGAGAAGAGCCCCGAGACGGTGGCGGCGGAGCTGAAGGAGGCCGAGACCGCGGCCATCAG 180 * * ** **** * ** ** ********* *** ******** * * consensus_1413#0 CGGCGGGTGGTGGGCCGGCGCCGCGCAGGAGATGTCGGAGATCGAGTGGCCGGCGCCCGG 137 consensus_1413#1 CAGCGGGTGGTGGGTCGGCGTCGCGCAGGAGATGTCGAAGATCGAGTGGCCGGTGCCCGG 240 * ************ ***** **************** *************** ****** consensus_1413#0 GAAGGTGGTGGGCACCACCGGCGTGGTGCTCGGCGTCATCGCGGGCTCCACCGCCGCGCT 197 consensus_1413#1 GAAGGTGGTGGGCACCACAGGCGTCGTGCTCGGTGTCATCGCGGGCTCCACCGCCGCGCT 300 ****************** ***** ******** ************************** consensus_1413#0 GCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCGTCTTCGCCGGCCGGGGACT 257 consensus_1413#1 GCTCTCCGTCAACGCGCTCCTCGCCGAGCTCTCCGACCGCACCGCCGCTCGA-------- 352 **************************************** * *** * consensus_1413#0 CCAGGATTTCTTCTGATGAAGGTTGAGCTGAGAGTCTGAGATAGGCGGAAGGCCTACCTT 317 consensus_1413#1 ------------------------------------------------------------ consensus_1413#0 TCAATGCTGAAGCTAATGGTGAAGACGACAAGAATTAAATCGAGCAGTTCCAATTGGATG 377 consensus_1413#1 ------------------------------------------------------------ consensus_1413#0 AAGCCGGCAAGCATCCATTTGTTCTGTTTGCCAATCTATCGAGGTGCTATGCTGATGTGA 437 consensus_1413#1 ------------------------------------------------------------ consensus_1413#0 TGTTGTGCACTTGTGCTGTCCGTATTTATAAGAATATAAGGTTAAACTCCACCTC 492 consensus_1413#1 ------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||