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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14163#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1421 fasta sequence
[TGCAAACTGCCCACTGCCCACTCCCTCCTCTCCGGTCTCCATCTCCCAGTTTCTTCTTCCTCTCCGCTCTCTCCGCTGCTCTCGTCCCGTCTCTGTCCGGATTGCTCCGATTTCTTGCTCTTTACACCTGTCCATGGCGGGGTGAGTGGAGAGCGCGAATCTTGGATCCAACCCTTCGCGTTCTTGCTCGGCGAGGATGGAATTCGGGGGCGCCATTGATGATCAGAGTGAAATGTGGGGATGGCAAAGTCAGGAGTATGATCTGCA-GAAAGATTTGCTTGCTGAAGAAGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCGGTGATGCTTGGACCATGTTTGATGAGCAAACTCCAATAAAACATTGTACAGACATAGATTTTCAGTTCTGTGATATAGGAGATATCATTGTCAAGGATTTTGATGAAGGAAAGGAAACTTTACAAGCTAAACGAAGACGCATGCTGCAGTTCTGTTCAGACAATGTTGAGATGGATTGTGCTATGGCAGCAGATGGACTATCGGAAAATCTTCAATTGAATTTGGGTTTCTCTGGTGATCAGTGTTTATTAAACTGTGATGGGACAGAGGAACTACCAGAAGAATGGCTAGTAGATTGTTCACCACAAGAGAGTGAGCCTCAATGCCCGCCTGAAGATATGTCCGTTCATTTGAGTAGTCCTGCTGTGGCCATGGAAGAAGCCAATCTTTCCGTGCACAAAAATTCTTCGTCTCGGGAGCAGGGCAACACAGTCCAGAAGAACACTGTGCAAGCTCGACCAACACCTCTGAAAGCTGGAAAAAATATTATTAGAGCAAGAAAGGTGAAAACATCAGTCGTCTATCCTTTCGAGCTTATCAAGCCATGCGGTTTTCATGGTGATGTCACATTGCATGATATCAATCAGAGGATCCACGCCCCGCCCCCATACAAGATAAAGCACAAGATCGACGAGGAGCAGCTCTCCTATCAGACTTCAGCTATTTCCGGGAAGCCTGTAGTCCACAAGACAAAGATTCATACAGAAGGAGGAAAGGGCAGTATCACAATCACAAGAACTAGAGGTTAATTAGGTCAATGGTATGCATATATGGTGCCAATATGGTCCTTGTACCATGCATTTCTGATATATTGGGTTGTGTCAATGTTTTGTGGCCAAGGAAATGCATGCCCTTGTTGGAATATTGTTAGCCATTTTTTTTTCACTTTATTTCTTCCATTGTCCCCCCTTCGGAACTTCTTTGCCTGTACTTGCTTGGTTAGTGTGAGATAGTATGATAATAGAGTG-TGTAGGCA-GGGTGTGGCAGTGGCAAAGTGTG-CTGCTTTTTT--GGTTCTTGGTTGAAGGGGGAAAGTTGATGTAATCAGATAAGTCAGTAATTGTGGACATATTGGTTTGGTGAGAT]
[+] EMBL AK108783 [TGCAAACTGCCCACTGCCCACTCCCTCCTCTCCGGTCTCCATCTCCCAGTTTCTTCTTCCTCTCCGCTCTCTCCGCTGCTCTCGTCCCGTCTCTGTCCGGATTGCTCCGATTTCTTGCTCTTTACACCTGTCCATGGCGGGGTGAGTGGAGAGCGCGAATCTTGGATCCAACCCTTCGCGTTCTTGCTCGGCGAGGATGGAATTCGGGGGCGCCATTGATGATCAGAGTGAAATGTGGGGATGGCAAAGTCAGGAGTATGATCTGCA GAAAGATTTGCTTGCTGAAGAAGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCGGTGATGCTTGGACCATGTTTGATGAGCAAACTCCAATAAAACATTGTACAGACATAGATTTTCAGTTCTGTGATATAGGAGATATCATTGTCAAGGATTTTGATGAAGGAAAGGAAACTTTACAAGCTAAACGAAGACGCATGCTGCAGTTCTGTTCAGACAATGTTGAGATGGATTGTGCTATGGCAGCAGATGGACTATCGGAAAATCTTCAATTGAATTTGGGTTTCTCTGGTGATCAGTGTTTATTAAACTGTGATGGGACAGAGGAACTACCAGAAGAATGGCTAGTAGATTGTTCACCACAAGAGAGTGAGCCTCAATGCCCGCCTGAAGATATGTCCGTTCATTTGAGTAGTCCTGCTGTGGCCATGGAAGAAGCCAATCTTTCCGTGCACAAAAATTCTTCGTCTCGGGAGCAGGGCAACACAGTCCAGAAGAACACTGTGCAAGCTCGACCAACACCTCTGAAAGCTGGAAAAAATATTATTAGAGCAAGAAAGGTGAAAACATCAGTCGTCTATCCTTTCGAGCTTATCAAGCCATGCGGTTTTCATGGTGATGTCACATTGCATGATATCAATCAGAGGATCCACGCCCCGCCCCCATACAAGATAAAGCACAAGATCGACGAGGAGCAGCTCTCCTATCAGACTTCAGCTATTTCCGGGAAGCCTGTAGTCCACAAGACAAAGATTCATACAGAAGGAGGAAAGGGCAGTATCACAATCACAAGAACTAGAGGTTAATTAGGTCAATGGTATGCATATATGGTGCCAATATGGTCCTTGTACCATGCATTTCTGATATATTGGGTTGTGTCAATGTTTTGTGGCCAAGGAAATGCATGCCCTTGTTGGAATATTGTTAGCCATTTTTTTTTCACTTTATTTCTTCCATTGTCCCCCCTTCGGAACTTCTTTGCCTGTACTTGCTTGGTTAGTGTGAGATAGTATGATAATAGAGTG TGTAGGCA GGGTGTGGCAGTGGCAAAGTGTG CTGCTTTTTT GGTTCTTGGTTGAAGGGGGAAAGTTGATGTAATCAGATAAGTCAGTAATTGTGGACATATTGGTTTGGTGAGAT]
[+] EMBL AU166275 [ CTCCCTCCTNTCCGGTCTCCATCTCCCAGTTTCTTCTTCCTCTCCGCTCTCTCCGCTGCTCTCGTCCCGNCTNTGTCCGGATTGCTCCGATTTCTTGCTCTTTACACCTGTCCATGGCGGGGTGAGTGGAGAGCGCGAATCTTGGATCCAACCNTTCGCGTTCTTGCTCGGCGAGGATGGAATTCGGGGGCGCCATTGATGATCAGAGTGAAATGTGGGGATGGCAAAGTCAGGAGTATGATCTGCA GAAAGATTTGCTTGCTGAANAAGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCGGTGATGCTTGGACCATGTTTGATGAGCAAACTCCAATAAAACATTGTACAGACATAGATTTTCAGTTCTGTGATATAGGAGATATCATTGNCAAGG ]
[+] EMBL CB672551 [ TCTTCCTCTCCGCTCTCTCCGCTGCTCTCGTCCCGTCTCTGTCCGGATTGCTCCGATTTCTTGCTCTTTACACCTGTCCATGGCGGGGTGAGTGGAGAGCGCGAATCTTGGATCCAACCCTTCGCGTTCTTGCTCGGCGAGGATGGAATTCGGGGGCGCCATTGATGATCAGAGTGAAATGTGGGGATGGCAAAGTCAGGAGTATGATCTGCA GAAAGATTTGCTTGCTGAAGAAGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCGGTGATGCTTGGACCATGTTTGATGAGCAAACTCCAATAAAACATTGTACAGACATAGATTTTCAGTTCTGTGATATAGGAGATATCATTGTCAAGGATTTTGATGAAGGAAAGGAAACTTTACAAGCTAAACGAAGACGCATGCTGCAGTTCTGTTCAGACAATGTTGAGATGGATTGTGCTATGGCAGCAGATGGACTATCGGAAAATCTTCAATTGAATTTGGGTTTCTCTGGTGATCAGTGTTTATTAAACTGTGATGGGACAGAGGAACTACCAGAAGAATGGCTAGTAGATTGTTCACCACAAGAGAGTGAGCCTCAATGCCCGCCTGAAGATATGTCCGTTCATTTGAGTAGTCCTGCTGTGGCCATGGAAGAAGCCAATCTTTCCGTGCACAAAAATTCTTCGTCTCGGGAGCAGGGC ]
[+] EMBL CB649121 [ CTTCCTCTCCGCTCTCTCCGCTGCTCTCGTCCCGTCTCTGTCCGGATTGCTCCCCCTACTTGCTCTTTACACCTGTCCATGGCGGGGTGAGTGGAGAGCGCGAATCTTGGATCCAACCCTTCGCGTTCTTGCTCGGCGAGGATGGAATTCGGGGGCGCCCTTGATGATCAGAGTGAAATGTGGGGATGGCAAAGTCAGGAGTATGATCTGCACGAAAGATTTGCTTGCTGAAGAAGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCGGTGATGCTTGGACCATGTTTGATGAGCAAACTCCAATAAAACATTGTACAGACATAGATTTTCAGTTCTGTGATATAGGAGATATCATTGTCCAGGATTTTGATGAAGGAAAGGAAACTTTACCAGCTAAACGAAGACGCATGCTGCAGTTCTGTTCAGACAATGTTGAGATGGATTGTGCTAT ]
[+] EMBL C91898 [ GAACTACCAGAAGAATGGCTAGTAGATTGTTCACCACAAGAGAGTGAGCCTCAATGCCCGCCTGAAGATATGTCCGTTCATTTGAGTAGTCCTGCTGTGGCCATGGAAGAAGCCAATCTTTCCGTGCACAAAAATTCTTCGTCTCGGGAGCAGGGCAACACAGTCCAGAAGAACACTGTGCAAGCTCGACCAACACCTCTGAAAGCTGGAAAAAATATTATTAGAGCAAGAAAGGTGAAAACATCAGTCGTCTATCCTTTCGAGCTTATCAAGCCATGCGGTTTTCATGGTGATGTCACATTGCATGATATCAATCAGAGGATCCACGCCCCGCCCCCATACAAGATAAAGCACAAGATCGACGAGGAGCAGCTCTCCTATCAGACTTCAGCTATTTCCGGGAAGCCTGTAGTCCACAAGACAAAGATTCATACAGAAGGAGGAAAGGGCAGTATCACAATCACAAGAACTAGAGGTTAATTAGGTCAATGGTATGCATATATGGTGCCAATATGGTCCTTGTACCATGCATTTCTGATATATTGGGTTGTGTCAATGTTTTGTGGCCAAGGAAATGCATGCCCTTGTTGGAATATTGTTAGCCATTTTTTTTTCACTTTATTTCTTCCATTGTCCCCCCTTCGGAACTTCTTTGCCTGTACTTGCTTGGTTAGTGTGAGATAGTATGATAATAGAGTG TGTA ]
[+] EMBL C73795 [ ACGAGGAGCAGCTCTCCTATCAGACTTCAGCTATTTCCGGGAAGCCTGTAGTCCACAAGACAAAGATTCATACAGAAGGAGGAAAGGGCAGTATCACAATCACAAGAACTAGAGGTTAATTAGGTCAATGGTATGCATATATGGTGCCAATATGGTCCTTGTACCATGCATTTCTGATATATTGGGTTGTGTCAATGTTTTGTGGCCAAGGAAATGCATGCCCTTGTTGGAATATTGTTAGCCATTTTTTTTTCACTTTATTTCTTCCATTGTCCCCCCTTCGGAACTTCTTTGCCTGTACTTGCTTGGTTAGTGTGAGATAGTATGATAATAGAGTGTTGTAGGCAGGGGTGTGGCAGTNGCAAAGTGTGCCNGCTTTTTTTGGGTCCTTGGTTGAAGGGGGAAAGTTGATGTAATCAGATAAGTCAGTAATTGTGGACAa ]
consensusID : consensus_14163#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1017 fasta sequence
[ATTCGCCGCCGCCACCATCCACTCCCCCACCGTCCTCCGTCGCCTTCTCTCTGAATCTTGGCGGCGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGCGGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGTCCGCGCGCGCTAGAGCCGGTGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCAGCAG-CG-ACCGCGCGCAGTCGAACCGGCGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGCCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCAGCAACAGCACAACGACAACCAAAGAGTGAAATGTGGGGATGGCAAAGTCAGGAATGTGATCTGCAGAAAGATTTGCTTACTGAAGATGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAG-CAAATCAGAATG-CCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG-TTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAAATTATGGATGAAATATTT]
[+] EMBL AK061190 [ATTCGCCGCCGCCACCATCCACTCCCCCACCGTCCTCCGTCGCCTTCTCTCTGAATCTTGGCGGCGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGCGGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGTCCGCGCGCGCTAGAGCCGGCGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCAGCAG CG ACCGCGCGCAGTCGAACCGGTGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGGCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCAAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCAGCAACAGCACAACGACAACCAAAGAGTGAAATGTGGGGATGGCAAAGTCAGGAATGTGATCTGCAGAAAGATTTGCTTACTGAAGATGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAG CAAATCAGAATG CCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTGTTTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAAATTATGGATGAAATATTT]
[+] EMBL AK121830 [ GCCGCCGCCACCATCCACTCCCCCACCGTCCTCCGTCGCCTTCTCTCTGAATCTTGGCGGTGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGCGGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGTCCGCGCGCGCTAGAGCCGGTGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCGGCAG CG ACCGCGCGCAGTCGAACCGGCGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGCCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCAGCAACAGCACAACGACAACCAAAGA GAAATGTGGGGATGGCAAAGTCAGGAATGTGATCTGCAGAAAGATTTGCTTACTGAAGATGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAG CAAATCAGAATG CCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG TTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAA ]
[+] EMBL AK105893 [ CCGCCGCCACCATCCACTCCCCCACCGTCCTCCGTCGCCTTCTCTCTGAATCTTGGCGGCGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGCGGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGTCCGCGCGCGCTAGAGCCGGCGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCAGCAG CG ACCGCGCGCAGTCGAACCGGTGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGGCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCAAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCAGCAACAGCACAACGACAACCAAAGAGTGAAATGTGGGGATGGCAAAGTCAGGAATGTGATCTGCAGAAAGATTTGCTTACTGAAGATGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAG CAAATCAGAATG CCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG TTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAA ]
[+] EMBL CB682109 [ CACTCCCCCACCGTCCTCCGTCGCCTTCTCTCTGAATCTTGGCGGTGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGCGGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGTCCGCGCGCGCTAGAGCCGGTGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCGGCAG CG ACCGCGCGCAGTCGAACCGGCGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGCCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCAGCAACAGCACAACGACAACCAAAGA GAAATGTGGGGATGGCAAAGTCAGGAATGTGATCTGCAGAAAGATTTGCTTACTGAAGATGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAG CAAATCAGAATG CCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG TTTTTTTTAGGTTGCTGGGCTCAAAC ]
[+] EMBL AU029492 [ CTAGAGCCGGTGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCCTTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGC GC GCAGNCGNACCGCGCGCAGTCGAACCGGCGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGGCGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGATCTGCAGGTTTGTCCACGGCGACGACGCCGCCGCTCTGGCGTGCGCTGCTATGGACGCGGCCACCGCCGAACAGCAGCAGTGCCAGGATTTCCTCCTCCGTTCCAAGAGCCGGTGCCTCGGCCCTGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCCTTAGCCTCTTGCTGCA ]
[+] EMBL AU029897 [ cgGAAAGATTTGCTTACTGAAGATGCTGCAGATCCATCTAGCTGTTTGTGGAGTGAAGCCAAATCAGAATGCCCAGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG TTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAAATTAaaaaa ]
[+] EMBL AU058148 [ AGTGATGCTTGGACCATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG TTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTTTGTTTAAA ]
[+] EMBL OSC18461 [ CATGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTG TTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAATTT ]
consensusID : consensus_14163#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 649 fasta sequence
[CNTTCTTAGGAATCTGCCAGGTTTGTCCCACGCCGACGACCGCCGCCGCTTTGGCCTTGCCGCTGCTATGGACGCGGCCCACCGCCGAACANCAGCCAGTGCCAGGATTTCCTCCTCCCGTTCCCAAGAGCCGGTGCCTCGGCCCCTGCTGCTTCCCGGCTTACCNTCCGCCCCCACCAAGTGCCCTTAGCCTCTTGCTGCCAGCAACAGCACAACGACAACCAGGAATGTGGGGATGGCAAAGTCAGGAATGTGATCTNCAGAAAGATTTGCTTACTGAAGATGCTGCCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCAGTGATGCTTGGACCTGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTGTTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAAAAAAAAAAAAAAAAAAAAAAAA]
[+] EMBL AU029493 [CNTTCTTAGGAATCTGCCAGGTTTGTCCCACGCCGACGACCGCCGCCGCTTTGGCCTTGCCGCTGCTATGGACGCGGCCCACCGCCGAACANCAGCCAGTGCCAGGATTTCCTCCTCCCGTTCCCAAGAGCCGGTGCCTCGGCCCCTGCTGCTTCCCGGCTTACCNTCCGCCCCCACCAAGTGCCCTTAGCCTCTTGCTGCCAGCAACAGCACAACGACAACCAGGAATGTGGGGATGGCAAAGTCAGGAATGTGATCTNCAGAAAGATTTGCTTACTGAAGATGCTGCCAGATCCATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCAGTGATGCTTGGACCTGTTCGATTAGCAAACTCCATCTAGCTGCTTGTACATGTGTTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAACTTTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCTTTTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGATGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCTGATGATGATGATGAGAGAATGTAAATTGATGATCGGTAATTAAAAAAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_14163#1 ------------------------------------------------------------
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TGCAAACTGCCCACTGCCCACTCCCTCCTCTCCGGTCTCCATCTCCCAGTTTCTTCTTCC 60
consensus_14163#1 ------------------------------------------------------------
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TCTCCGCTCTCTCCGCTGCTCTCGTCCCGTCTCTGTCCGGATTGCTCCGATTTCTTGCTC 120
consensus_14163#1 ------------------------------------------------------------
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TTTACACCTGTCCATGGCGGGGTGAGTGGAGAGCGCGAATCTTGGATCCAACCCTTCGCG 180
consensus_14163#1 ------------------------------------------------------------
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TTCTTGCTCGGCGAGGATGGAATTCGGGGGCGCCATTGATGATCAGAGTGAAATGTGGGG 240
consensus_14163#1 ------------------------------------------------------------
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 ATGGCAAAGTCAGGAGTATGATCTGCAGAAAGATTTGCTTGCTGAAGAAGCTGCAGATCC 300
consensus_14163#1 ------------------------------------------------------------
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 ATCTAGCTGTTTGTGGAGTGAAGCAAATCAGAATGCCGGTGATGCTTGGACCATGTTTGA 360
consensus_14163#1 ---------------------ATTCGCCGCCGCCACCATCCACTCCCCCACCGTCCTCCG 39
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TGAGCAAACTCCAATAAAACATTGTACAGACATAGATTTTCAGTTCTGTGATATAGGAGA 420
consensus_14163#1 TCGCCTTCTCTCTGAATCTTGGCGGCGGCGGCGACCGAGTGCGCTCGAGCCGGCGGCGGC 99
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TATCATTGTCAA-GGATTTTGATGAAGGAAAGGAAACTTTACAAGCTAAACGAAGACGCA 479
consensus_14163#1 GGCTCGCATCCCCATTCCGTCCTCCGCCCCCTCCTCTCTGAATCTCGGCGGTGGCGGTGT 159
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TGCTGCAGTTCTGTTCAGACAATGTTGAGATGGATTGTGCTATGGCAGCAGATGGACTAT 539
consensus_14163#1 CCGCGCGCGCTAGAGCCGGTGCCGGCGCCGGCGGCTCGCATCCCCACTCGCATTCCGTCC 219
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 CGGAAAATCTTCAATTGAATTTGGGTTTCTCTGGTGATCAGTGTTTATTAAACTGTGATG 599
consensus_14163#1 TTCGTCCCCCTCCTCTTTGAATCTCGGCGGCGACCACGCATGCTCAAGCCGCCGGCGGCA 279
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 GGACAGAGGAACTACCAGAAGAATGGCTAGTAGATTGTTCACCACAAGAGAGTG--AGCC 657
consensus_14163#1 GCAGCGACCGCGCGCAGTCGAACCGGCGGTGGCGGCGGCGACCGTGCGCGCACTAGCTGG 339
consensus_14163#2 ------------------------------------------------------------
consensus_14163#0 TCAATGCCCGCCTGAAGATATGTCCGTTCATTTGAGTAGTCCTGCTGTGGCCATGGAAGA 717
consensus_14163#1 CGGCGGTGGCTAGCATCCCCCCTCGGTACTCCGTTCTAGGA-TCTGC-AGGTTTGTCC-- 395
consensus_14163#2 ------------------------------CNTTCTTAGGAATCTGCCAGGTTTGTCCC- 29
consensus_14163#0 AGCCAAT--CTTTCCGTGCACAAAAATTCTTCGTCTCGGGAGCAGGGCAACACAGTCCAG 775
* *** * * ****
consensus_14163#1 ----ACGGCGACGAC-GCCGCCGCTCTGGCGTG--CGCTGCTATGGACGCGGCC-ACCGC 447
consensus_14163#2 ----ACGCCGACGACCGCCGCCGCTTTGGCCTTGCCGCTGCTATGGACGCGGCCCACCGC 85
consensus_14163#0 AAGAACACTGTGCAAGCTCGACCAACACCTCTGAAAGCTGGAAAAAATATTATT-AGAGC 834
** * * ** * * **** * * * **
consensus_14163#1 CGAACAGCAGC-AGTGCCAGGATTTCCTCCTCCG-----TTCCAAG--AGCCGGTGCCTC 499
consensus_14163#2 CGAACANCAGCCAGTGCCAGGATTTCCTCCTCCCG---TTCCCAAG--AGCCGGTGCCTC 140
consensus_14163#0 AAGAAAGGTGAAAACATCAGTCGTCTATCCTTTCGAGCTTATCAAGCCATGCGGTTTTCA 894
* * * * *** * **** * **** * ****
consensus_14163#1 GGCCC-TGCTGCTTCCCGGCTTACCATCCGCCCCCACCAAGTGCC-TTAGCCTCTTGCTG 557
consensus_14163#2 GGCCCCTGCTGCTTCCCGGCTTACCNTCCGCCCCCACCAAGTGCCCTTAGCCTCTTGCTG 200
consensus_14163#0 TGGTGATGTCACATTGCATGATATCAATCAGAGGATCCACGCCCCGCCCCCATACAAGAT 954
* ** * * * ** * * *** * ** * *
consensus_14163#1 C-AGCAACAGCACAACGACAACCAAAGAGTGAAATGTGGGGATGGCAAAGTCAGGAA--- 613
consensus_14163#2 CCAGCAACAGCACAACGACAACCA------GGAATGTGGGGATGGCAAAGTCAGGAA--- 251
consensus_14163#0 AAAGCACAAGATCGACGAGGAGCAGCTC-TCCTATCAGACTTCAGCTATTTCCGGGAAGC 1013
**** ** * **** * ** ** * ** * ** ** *
consensus_14163#1 -TGTGATCTGCAGAA-AGATTTGCTTACTGAAGATGCTGC-AGATCCATCTAGCTGTTTG 670
consensus_14163#2 -TGTGATCTNCAGAA-AGATTTGCTTACTGAAGATGCTGCCAGATCCATCTAGCTGTTTG 309
consensus_14163#0 CTGTAGTCCACAAGACAAAGATTCATACAGAAGGAG--GAAAGGGCAGTATCACAATCAC 1071
*** ** ** * * * * * *** **** * * ** * * * * *
consensus_14163#1 TGGAGT--GAAGCAAATCAGAATGCCAGTGATGCTTGGACCATGTTCGATTAG--CAAAC 726
consensus_14163#2 TGGAGT--GAAGCAAATCAGAATGCCAGTGATGCTTGGACC-TGTTCGATTAG--CAAAC 364
consensus_14163#0 AAGAACTAGAGGTTAATTAGGTCAATGGT-ATGCATATATGGTGCCAATATGGTCCTTGT 1130
** ** * *** ** ** **** * * ** * * *
consensus_14163#1 TCCATCTAGCTGCTTGTACATGTGTTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAAC 786
consensus_14163#2 TCCATCTAGCTGCTTGTACATGTGTTTTTTTTAGGTTGCTGGGCTCAAACATATGTGAAC 424
consensus_14163#0 ACCATGCA-TTTCTGATATATTGGGTTGTGTCAATGTTTTGTGGCCAAGGAAATGCATGC 1189
**** * * ** ** ** * ** * * * * ** * *** * *** *
consensus_14163#1 T-TTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCT---T 842
consensus_14163#2 T-TTGATGGAGAAGTGGCCAAAATGCTTTGGTGGCTGCTGGGTATTGTCATGTGCT---T 480
consensus_14163#0 CCTTGTTGGAATATTGTTAGCCATTTTTTTTTCACT-TTATTTCTTCCATTGTCCCCCCT 1248
*** **** * ** ** *** * ** * * ** *** * *
consensus_14163#1 TTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGA 902
consensus_14163#2 TTGAACAGGTTTTAATTATGCTGTATGAGATATGCTCAACAAACATTATGTTGTATGAGA 540
consensus_14163#0 TCGGAACTTCTTTGCCTGTACTTGCTTGGTTAGTGTGAGATAGTATGATAATAGAGTGTG 1308
* * * *** * * ** * * ** * * * ** ** * *
consensus_14163#1 TGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCT---GATGATGATGATG 959
consensus_14163#2 TGTGAAGGTTGTAATGTGTTTTTAGAATATTTATGTGCTGATCT---GATGATGATGATG 597
consensus_14163#0 TAGGCAGGGTGTGGCAGTGGCAAAGTGTGCTGCTTTTTTGGTTCTTGGTTGAAGGGGGAA 1368
* * *** *** ** * * * * ** * * *** * *
consensus_14163#1 AGAGAATGTAAATTGATGA-TCGGTAATTAATTTTGTTTAAATTATGGATGAAATATTT 1017
consensus_14163#2 AGAGAATGTAAATTGATGA-TCGGTAATTAAAAAAAAAAAAAAAAAAAAAAAA------ 649
consensus_14163#0 AGTTGATGTAATCAGATAAGTCAGTAATTGTGGACATATTGGTTTGGTGAGAT------ 1421
** ****** *** * ** ****** *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||