These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14166#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 8 consensus length = 1563 fasta sequence [TCTTTTTTTTGACACCATAAAGGCAATGTATTGTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG--AACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACC-AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC-AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC-AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGATGCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGTGCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCG] [+] EMBL CB683577 [TCTTTTTTTTGACACCATAAAGGCAATGTATTGTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGTTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAAC ] [-] EMBL BQ909101 [ TTTTGACACCATAAAGGCAATGTATGGTGCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGA ] [-] EMBL BI813052 [ tttttTTGTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATG TTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTG TTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGGTTTCAGGAAGT ] [+] EMBL CB659599 [ GTTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAAGCG AACGATGGAATTTGACGCCTTCGGTTTGGGTTCGGGCCTTGGACC AAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACAC AATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTG ] [-] EMBL CA765208 [ TCCTATTCATTCATTC TGGG TTGACCAGTTTTATGAGATANCCAATCAAGGACCCGAGCCCCTGCCAGAAGCGAAAACGATGNAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACCAAAAGAGGCCTTNGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACAAATACTACACTGTGCGATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGACATGGATTTTTCACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACACGCAACAGTGCATGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTAC AGTTCcccctt ] [-] EMBL CB659598 [ GGCATGCGGCCATGTTGAGATGACATGGATTTTCNACAGCCAAGGCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTCATCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTTCTTTGAAATACTCATTGCCCTC AATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGATGCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGTGCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTT ] [-] EMBL CB683163 [ ttTTTGAAATACTCA TGCCCTCAAATCTTCCTCCTGTCCGCTGCTTCAATCCTTTCCTCTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAACTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCCCATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAACACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGATGCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGTGCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTT ] [-] EMBL CF322121 [ agctAACCACAGGTGGGACAGAGCCATCTTGCGCAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGACGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGAATAAAAAATCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTT ATGCGGGCTTCCCTTTTCGACGCGGCCG] consensusID : consensus_14166#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [AAAAGGTTAAAAGCTCTATACGAACCATAGCTCCAATGCTCACGAAGCACAAAAATGTCAGGAGTTTCTAACAACAATATTTGACACCGATTGCGTGCTGCACAACTCGAATTTCCAACCTACAGTACAAGATGGTCAATACTGCATAATTTTTCCAGTAAAACATGTCCTATCCCTACTCATCCTTGCGTTTGAACAGTTTAACAAGATAGCCAATTAAGGAGACCAGCCATCGCCAGAAGAGAACTAGGAAATTTGACGCCTTCGGTTTGGGTTCAGGCCTTGGCCCGAACAGACCTTTGTATAGCTCCTTTTGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGCTGCTTCAATCCTTTCTTCCACTG] [-] EMBL AK065114 [AAAAGGTTAAAAGCTCTATACGAACCATAGCTCCAATGCTCACGAAGCACAAAAATGTCAGGAGTTTCTAACAACAATATTTGACACCGATTGCGTGCTGCACAACTCGAATTTCCAACCTACAGTACAAGATGGTCAATACTGCATAATTTTTCCAGTAAAACATGTCCTATCCCTACTCATCCTTGCGTTTGAACAGTTTAACAAGATAGCCAATTAAGGAGACCAGCCATCGCCAGAAGAGAACTAGGAAATTTGACGCCTTCGGTTTGGGTTCAGGCCTTGGCCCGAACAGACCTTTGTATAGCTCCTTTTGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGCTGCTTCAATCCTTTCTTCCACTG] consensusID : consensus_14166#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 748 fasta sequence [CTTTAAAAGGTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAATTTAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACCTGAAGAATAGGATTATGAGTTCATCATCCAGTCAATAATTATTCGGTTTCGGAAAAAGGGGGAAAAATTCTTCACTTGATGAATTGCCAGGTCAGTTACGTCATGAAATTAGTGAGGGTTGTCTTACAAAAATAAGTTGAGGAAAATATAGGCAACTGCACTATATTCTTCACTTTTTGGTCCAAGCGTCTAGTTA] [+] EMBL CB619562 [CTTTAAAAGGTCATAGGAAAAATGTCTGAACTTTTAGCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGATTGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGAATTCCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATCCGTTCCTATTCATTCATTCTTGGGTTTGAACAGTTTTATGAGATAACCAATCAAGGACACGAGCCACTGCCAGAATTTAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGGCCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTGTTCCGCGAGAGACCGAAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGGCTTTCAGGAAGTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCTCGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACCTGAAGAATAGGATTATGAGTTCATCATCCAGTCAATAATTATTCGGTTTCGGAAAAAGGGGGAAAAATTCTTCACTTGATGAATTGCCAGGTCAGTTACGTCATGAAATTAGTGAGGGTTGTCTTACAAAAATAAGTTGAGGAAAATATAGGCAACTGCACTATATTCTTCACTTTTTGGTCCAAGCGTCTAGTTA] consensusID : consensus_14166#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 689 fasta sequence [GGCCCGCCCNTTTTTTTTTTTTTTTTTTTTACTGAGCCCCTTGGTNCATGTAACTTTCCAAAATGTATGTTCTGGGCCCNTGATACACAGGGATTAAGTTCTCTTTATTATGGGNATTTCCATAGAAACAACAACNAGATGAAATGTGATGATAAGACAAATGCTAATGAAGGTGGAATATATTAGCNTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTATGGACATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGNGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCNGNGGAGGNGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGNGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCC-GCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCGTATCAA] [-] EMBL AU077762 [GGCCCGCCCNTTTTTTTTTTTTTTTTTTTTACTGAGCCCCTTGGTNCATGTAACTTTCCAAAATGTATGTTCTGGGCCCNTGATACACAGGGATTAAGTTCTCTTTATTATGGGNATTTCCATAGAAACAACAACNAGATGAAATGTGATGATAAGACAAATGCTAATGAAGGTGGAATATATTAGCNTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTATGGACATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGNGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCNGNGGAGGNGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGNGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCAGCC GCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCGTATCAA] [-] EMBL AU077763 [ TTTTTTTTACTGAGCCCC TAGTACATGTAACTTTAC AAATGTATGTTCTGAGCCCCTGATACACAGAGAATAAGTTCTC TTATTAT GGAACTTCCATAGAAACAACAACGAGATGAAATGTGATGATAAGACAAATGCTAATGAAGGTGGAATATATTAGCCTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTAT GACATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTTTTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTGAACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCTCCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTCCGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGAGACTCCAGCAGCANCAGCCGGCCAGCGAGANGTCGCCGTCCGGCCGCCGCTTNATGCGGGCTTNCCTTTTCGACGCGGCC ] consensusID : consensus_14166#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [TTTGTATAGCTCCTTTGGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGAGCGGCCGCGAATTCGCGGCCGCTAGCGGC] [-] EMBL AU225473 [TTTGTATAGCTCCTTTGGTTTCTGGTACAGAGCTTTATCCTGCTCCGCGAGCGACCGAAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGGCCTTCAGGAAGTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCTCGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCGATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGCAGGGATTTTTCACAGCTAAGGCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATCATCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTTCTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGAGCGGCCGCGAATTCGCGGCCGCTAGCGGC] consensusID : consensus_14166#5 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 458 fasta sequence [TTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGCATGCATGCCTTCTATAGATGATACACATCAAATAGCTTACTCTTATGCCATTCTGATCTTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATCAGCAACTTTCAACTTGCTATTGATATTCTAGTTTTTTTTTTGGGTGTGTGTGTGTGTGTGTGAGGGCGATTGACAACTTGCAAGGACATAAAGACTAAATAGTTATATTTTTATTACTAATATATTTCCCCCCCTGTTTTCTGATGGTTCACTAAATATACAATACAGGTACAGGGTAACTATATAACTTTCCTACAAATATCTTTTGGACACTCTT] [+] EMBL CF306900 [TTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGCATGCATGCCTTCTATAGATGATACACATCAAATAGCTTACTCTTATGCCATTCTGATCTTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATCAGCAACTTTCAACTTGCTATTGATATTCTAGTTTTTTTTTTGGGTGTGTGTGTGTGTGTGTGAGGGCGATTGACAACTTGCAAGGACATAAAGACTAAATAGTTATATTTTTATTACTAATATATTTCCCCCCCTGTTTTCTGATGGTTCACTAAATATACAATACAGGTACAGGGTAACTATATAACTTTCCTACAAATATCTTTTGGACACTCTT] [+] EMBL CF306898 [TTGGGTTCAAGGCTCTCTGCATAAATTCGAGGATACTTGGCAAGAACAGCATCCCATTGAACTAGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGCATGCATGCCTTCTATAGATGATACACATCAAATAGCTTACTCTTATGCCATTCTGATCTTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATCAGCAACTTTCAACTTGCTATTGATATTCTAGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 TCTTTTTTTTGACACCATAAAGGCAATGTATTGTTCATAGGAAAAATGTCTGAACTTTTA 60 consensus_14166#2 ------------------------CTTTAAAAGGTCATAGGAAAAATGTCTGAACTTTTA 36 consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ----AAAAGGTTAAAAGCTCTATACGAACCATAGCTCCAATGCTCACGAAGCACAAAAAT 56 consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 GCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGAT 120 consensus_14166#2 GCTCCCAAAGCTCAAGTCACAATGCAGTGAAGGACTGAAGGCACAAAAATGCCGAGAGAT 96 consensus_14166#3 -------------------------------------------------GGCCCGCCCNT 11 consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 GTCAGGAGTTTCTAACAACAATATTTGA--CACCGATTGCGTGCTGCACAACTCGA-ATT 113 consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 TGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGA-ATT 179 consensus_14166#2 TGTAGAATTTGACACCGATTGCGTGCAGTTCAACACTCCCAACTACTTGTAGTAGA-ATT 155 consensus_14166#3 TTTTTTTTTTTTTTTTTTTACTGAGCCCCTTGGTNCATGTAACTTTCCAAAATGTATGTT 71 consensus_14166#5 -----------------------------------------------------TTGGGTT 7 consensus_14166#1 TCCAACCTACAGTACAAGATGGTCAATACTG---CATAATTTTTCCAGTAAAACATGTCC 170 consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATC 239 consensus_14166#2 CCCAGCCTACAGTACAATGAGTCCATGTTTTGGTCGTCAAATCGTCAGTTCTGCACTATC 215 consensus_14166#3 CTGGGCCCNTGATACACAGGGATTAAGTTCTCTTTATTA--TGGGNATTTCCATAGAAAC 129 consensus_14166#5 CAAGGCTCTCTGCATA---AATTCGAGGATACTTGGCAAGAACAGCA-TCCCATTGAACT 63 consensus_14166#1 TATCCCTACTCATCC------TTGCGTTTGAACA----GTTTAACAAGATAGCCAATTAA 220 consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CGTTCCTATTCATTC--ATTCTTGGGTTTGAACA----GTTTTATGAGATAACCAATCAA 293 consensus_14166#2 CGTTCCTATTCATTC--ATTCTTGGGTTTGAACA----GTTTTATGAGATAACCAATCAA 269 consensus_14166#3 AACAACNAG--ATGA--AATGTGATGATAAGACA----AATGCTAATGAAGGTGGAATAT 181 consensus_14166#5 AGTAATTGGAAAAGGTGAAAATAATGATACTTCATTTTATCCCTAGTTCTTCTACACTGC 123 consensus_14166#1 GGAGACCAGCCATCGCCAGAAGAGAACTAGGAAATTTGACGCCTTCGGTTTGGGTTCAGG 280 consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 GGACACGAGCCACTGCCAGAAGCGAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGG 353 consensus_14166#2 GGACACGAGCCACTGCCAGAATTTAACGATGGAATTTGACGCCTTCGGCTTGGGTTCGGG 329 consensus_14166#3 ATTAGCNTCATTCTATAAATCACCAGGATAAATATAGGGAATGATCAAACCATTTATGGA 241 consensus_14166#5 ATGCATGCC-TTCTATAGATGATACACATCAA-ATAGCTTACTCTTATGCCATTCTGATC 181 consensus_14166#1 CCTTGGCCCGAACAGACCTTTGTATAGCTCCTTTTGTTTCTGGTACAGAGCTTTATCCTG 340 consensus_14166#4 ------------------TTTGTATAGCTCCTTTGGTTTCTGGTACAGAGCTTTATCCTG 42 consensus_14166#0 CCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTG 413 consensus_14166#2 CCTTGGACCAAAGAGGCCTTTGTACAGCTCCTTCTGTTTTTGGTACAGAGCTTTATCCTG 389 consensus_14166#3 C-----ATACAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATG 296 consensus_14166#5 TTATAGTGCCACAAATAATCTATGATTCTAATAAGGGTTTTGAAAATCAGTTGATCGATC 241 * * ** * * * consensus_14166#1 CTCCGCGAGCGACCG-AAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGG 399 consensus_14166#4 CTCCGCGAGCGACCG-AAGCTCGCGCTGGATCTCCTTGTCTTCTGGAGAATACTTCTTGG 101 consensus_14166#0 TTCCGCGAGAGACCG-AAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGG 472 consensus_14166#2 TTCCGCGAGAGACCG-AAGCTCACGCTGGATCTCCTTGTCTTCTGGGGAATGTTTCTTGG 448 consensus_14166#3 ACTTGTTTTTTAACT-TTG-TCATGAAGGACCTCCATAT-TAGNGGAAACCACAGGTGGG 353 consensus_14166#5 AGCAACTTTCAACTTGCTATTGATATTCTAGTTTTTTTTTTGGGTGTGTGTGTGTGTGTG 301 * * * * * * * * * * consensus_14166#1 CCTTCAGGAA-GTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCT 458 consensus_14166#4 CCTTCAGGAA-GTCCTCCCTTGCTGATTCTGTTTGACCAAGTTCAGCTCTAGCTTTTCCT 160 consensus_14166#0 CTTTCAGGAA-GTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCT 531 consensus_14166#2 CTTTCAGGAA-GTCCTCCCTCGCTGATTCTGTCTGACCAAGTTCAGCTCTTGCTTTTCCT 507 consensus_14166#3 -----ACAGA-GCCATCTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAG-T 406 consensus_14166#5 TGAGGGCGATTGACAACTTGCAAGGA--CATAAAGACTAAATAGTTATATTTTTATTACT 359 * * * * * * ** * * * consensus_14166#1 CGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCG 518 consensus_14166#4 CGTCTGAACAACGCTTTCACGTTGTTTTCATCCTCTGACAACACAATTGTACACTGTGCG 220 consensus_14166#0 CGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACAATACTACACTGTGCG 591 consensus_14166#2 CGTCTGAACAATGCTTTCACATTGTTTTCATCCTCTGCCAACACC-TGAAGAATAGGATT 566 consensus_14166#3 TATCTCATTATCACTTGAACCNGNGGAGGNGGGATCGGCGGCGGCGGCGGGTGCCG-GCG 465 consensus_14166#5 AATATATTTCCCCCCCTGTTTTCTGATGGTTCACTAAATATACAATACAGGTACAGGGTA 419 * * * * consensus_14166#1 ATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGC-AGGG 577 consensus_14166#4 ATAGCTTCATCAAATCTCTTCAGTTTGATCAGGCATGCGGCCATGTTGAGATGGC-AGGG 279 consensus_14166#0 ATAGCTTCATCGAATCTCTTCAGTTTGATTAGGCATGCGGCCATGTTGAGATGAC-ATGG 650 consensus_14166#2 ATGAGTTCATCA------TCCAGTC--AATAATTATTCGGTTTCGGAAAAAGGGGGAAAA 618 consensus_14166#3 GCGAGCCCTCTT--CTTCCTCCACCACAGCCATCGCGCGNGTGCACGGTGGTTTGGTTGG 523 consensus_14166#5 ACTATATAACTT----TCCTACAA-ATATCTTTTGGACACTCTT---------------- 458 * * consensus_14166#1 ATTTTTCACA-GCTAAG--GCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATC 634 consensus_14166#4 ATTTTTCACA-GCTAAG--GCCATGTCTCTGTACTTCCCAAACAATTGAAACATGAAATC 336 consensus_14166#0 ATTTTTCACA-GCCAAG--GCCATATCTCTGTATTTCCCGAACAATTGAAACATGAAGTC 707 consensus_14166#2 ATTCTTCACTTGATGAATTGCCAGGTCAGT-TACGTCATGA--AATTAGTGAGGGTTGTC 675 consensus_14166#3 GTTTGGGGGCTTCCGAGCTCCGAGGCGGACG---GTTCGAGGAGATGAGACTGAGAAGTC 580 consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 A-TCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTT 693 consensus_14166#4 A-TCCCCCATGTATGCAATTGCCATTTCATATTGCTGCATAGCCTCCTCGAACTTCTTTT 395 consensus_14166#0 A-TCTCCCATGTATGCAATCGCCATTTCATATTGCTGCATGGCCTCCTCAAACTTCTTTT 766 consensus_14166#2 --TTACAAAAATAAGTTGAGGAAAATATAGGCAACTGCACTATATTCTTCA---CTTTTT 730 consensus_14166#3 AAACAGTTGAGAATACCACGAGAGACTCCAGCAGCAGCA--GCCGCCAGCGAGACGTCGC 638 consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 CTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTG---CTGCTTCAATCCTTTCTT 750 consensus_14166#4 CTTTGAAATATTCATTGCCTTCAATCTTCCTCCTGTCTGAG-CGGCCGCGAAT-TCGCGG 453 consensus_14166#0 CTTTGAAATACTCATTGCCCTCAATCTTCCTCCTGTCCG---CTGCTTCAATCCTTTCCT 823 consensus_14166#2 GGTCCAAGCGTCTAGTTA------------------------------------------ 748 consensus_14166#3 CGTCCGGCCGCCGCTTGATGCGGGCTTCCCTTTTCGACGCGGCCGTATCAA--------- 689 consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 CCACTG------------------------------------------------------ 756 consensus_14166#4 CCGCTAGCGGC------------------------------------------------- 464 consensus_14166#0 CTACTGTCATGTCACTTCGGGCTTTCCCCTCTTTGACATCATCAAACCCAATAAGTTCAA 883 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CTTCATATAAAAGATCTGCCATTGGAGGGACATTTGGGAATGAAAAGCTCCCTTCTTTCC 943 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CATAGCCTAGCTCCCAGCCAACATGCAACAGTGCACGCTCCCCACTTCTCATGTTACCAA 1003 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CACCAATGCCTAAACCAGACATTTGTTTTTTCTCTTTTCCAATTACTAGTTCAATGGGAT 1063 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 GCTGTTCTTGCCAAGTATCCTCGAATTTATGCAGAGAGCCTTGAACCCAAGCTCTATAGT 1123 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 GCAAAAAGCACGTCGCGAACTTTGATGGTTTCTTGCCATGGCCTTCTTTGATGACTTGTT 1183 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 TTTTAACTTTGTCATGAAGGACCTCCATATTAGAGGAAACCACAGGTGGGACAGAGCCAT 1243 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CTTGCGGAGGTTCAGTATGCACAAAAGAAGCTTCCTCTACAGTTATCTCATTATCACTTG 1303 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 AACCAGAGGAGGCGGGATCGGCGGCGGCGGCGGGTGCCGGCGGCGAGCCCTCTTCTTCCT 1363 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CCACCACAGCCATCGCGCGCGTGCACGGTGGTTTGGTTGGGTTTGGGGGCTTCCGAGCTC 1423 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 CGAGGCGGACGGTTCGAGGAGATGAGACTGAGAAGTCAAACAGTTGAGAATACCACGAGA 1483 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 ------------------------------------------------------------ consensus_14166#4 ------------------------------------------------------------ consensus_14166#0 GACTCCAGCAGCAGCAGCCGCCAGCGAGACGTCGCCGTCCGGCCGCCGCTTGATGCGGGC 1543 consensus_14166#2 ------------------------------------------------------------ consensus_14166#3 ------------------------------------------------------------ consensus_14166#5 ------------------------------------------------------------ consensus_14166#1 -------------------- consensus_14166#4 -------------------- consensus_14166#0 TTCCCTTTTCGACGCGGCCG 1563 consensus_14166#2 -------------------- consensus_14166#3 -------------------- consensus_14166#5 -------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||