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Oryza sativa
cluster # 14175 cluster # 14175       Sequences # 15       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14175#0 length = 600 sequences # 15  

consensusID : consensus_14175#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 15
consensus length = 600
fasta sequence
                              [TAACAATTCAACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC-GAATGGAAC-GGCCTTCAGTGTCCCGCTCCAGGA-CGACGCTCGTGCCGTCGGCTTCTTT-GCGCGCT-CTGG-ACT-GCTCGTCGATG-CT-ATTGGCGTCTATGTCCAA-CCA-TG-ATGCGATGCCCTGCAGCTAC-GTACCTGTGCCATTGCCCGTTAC-TGC-ATGCTCTACAAT-GG--TTTG-TGAGAATC-A-GAGTGGATTATAT-A-TGT-A--TTTGCACAACCGA-ATA-TTTCAAT-AA--TTCCACTCTGATTC-TGTGTC-GTAAGTCATATATATGTATTGTAAATC-GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC-GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACATTATAAAAAAAAANNA]

[+] EMBL AK062553             [TAACAATTCAACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GAGTGGATTATAT A TGT A  TTTGCACAACCGA ATA TTTCAAT AA  TTCCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACAT               ]
[+] EMBL AU066308             [         AACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGNTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTNACGGATGTTACCACGCACGANTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGNTCGTGCCGTCGGCTTCTTT GNGCGCT CTNG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATNCCCTGCAGCTAC GTACCTGTG                                                                                                                                                                                                                                                                                                          ]
[+] EMBL AU066225             [         AACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGTTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTNTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GAGTGGA TATAT A TGT A  TTT                                                                                                                                                                                                                            ]
[+] EMBL AU066245             [            AACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTGTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATTCTCTACAAT GGT TTTT TGAGAATC ANGAGTGGATTATAT ATTGTAA  TTTTCACAACCGG ATA TTTCAAT AA  TTtc                                                                                                                                                                                             ]
[+] EMBL AU066246             [            AACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT TCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTTGCCGTTACTTGCAATGCTCTACAAT GGGTTTTGTTGAGAATCAA GAGTNGATTATATAA TGT AATTTTGCACAACCGA ATATTTTCAAT AAATTTCCACTCTGATTC Tn                                                                                                                                                                                ]
[+] EMBL AU223373             [             ACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GAGTGGATTATAT A TGT A  TTTGCACAACCGA ATA TTTCAAT AA  TTCCACTCTGATTC TGTGTC GTAAGTCATAT                                                                                                                                                                ]
[+] EMBL OS1321879            [             ACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTNCCGTCGGCTTCTTT GCGCGCT CTGG ACT NCTCGTCGATG CT ATTGGCGTNTATGTCCAA CCA TN ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTNAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GAGTGGATTATAT A TGT A  TTTGNACAACCGA ATA TTTCAAT AA  TTNCACTCTGATTCTTTTGTC GTAAGTCATATATA                                                                                                                                                             ]
[+] EMBL OSS1715A             [              CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTNAAGATTGTCACGGATGTTACCACGNACGNGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGN CGNCGNTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT TCTCGTCGATG CT ATTGGCGTGTATNTCCAA CCATTG ATGCGATGNCCTNCAGCTACGGNACCTGTGCCATTNCCCGTTAC TGC ATGCTCTACAATGGG  TTTT TGAGAATC A GAGTGGGTTATAT A TGT AT TTTGCACAACCGATAT  TTTCAATAAA  TTNCACTCTGATTtt                                                                                                                                                                                  ]
[+] EMBL OSS2087A             [              CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTNTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL OS1321741            [              CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT A                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL OSS2185A             [              CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTNAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTNAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTG                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL OSC0321              [                                           AGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTNACGTACCTGAAGATTGTCACGGATGTTACCACGCACGANTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTNCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TNAGAATC A GAGTGGATTATAT A TGT A  TTTGCACAACCGA ATA TTTCAAT AA  TTNCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTA                                                                                                                                 ]
[+] EMBL AU223331             [                                                                                                  GGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCNCGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GAGTGGATTATAT A TGT A  TTTGCACAACCGA ATA TTTCAAT AA  TTCCACTCTGATTC TGTGTCGGTAAGTCATATATATGTATTGTAAATCGGTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGCGGTTCTACCTGATAACCTCAAAaaaaaaa                                                                           ]
[+] EMBL AU033048             [                                                                                                     ACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGANGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG NCT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GNGTGGATTATAT A TGT A  TTTGCACAACCGA ATA TTTCAAT AA  TTCCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTNATTGAATAAAGAATTGTGGTNCATACCACATTATAAAAAAAAANNA]
[+] EMBL AU161918             [                                                                                                                                                                                   GGTGTCCCGGAATGGAACTGGCCTTCAGTGTCCCGGTTCAGGANCGACGCTCGT CCGTCGGNTTCTTTGGCGCGCTCCTGGAACTGGCTCGTCGATGCCTAATTGGCGTCTATGTCCAACCCATTGAATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG  TTTG TGAGAATC A GAGTGGATTATAT A TGT A  TTTGCACAACCGA ATA TTTCAAT AA  TTCCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACATTATAAAAAAAAAaaa]


>consensus_14175#0 TAACAATTCAACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGA TCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAA CCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTG GTGTCCCGAATGGAACGGCCTTCAGTGTCCCGCTCCAGGACGACGCTCGTGCCGTCGGCT TCTTTGCGCGCTCTGGACTGCTCGTCGATGCTATTGGCGTCTATGTCCAACCATGATGCG ATGCCCTGCAGCTACGTACCTGTGCCATTGCCCGTTACTGCATGCTCTACAATGGTTTGT GAGAATCAGAGTGGATTATATATGTATTTGCACAACCGAATATTTCAATAATTCCACTCT GATTCTGTGTCGTAAGTCATATATATGTATTGTAAATCGTATATGTATTGTAAGTTGAGG GATCCTGCTGAGTCTGCGTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACA AAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACATTATAAAAAAAAANNA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)