These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14175#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 15 consensus length = 600 fasta sequence [TAACAATTCAACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC-GAATGGAAC-GGCCTTCAGTGTCCCGCTCCAGGA-CGACGCTCGTGCCGTCGGCTTCTTT-GCGCGCT-CTGG-ACT-GCTCGTCGATG-CT-ATTGGCGTCTATGTCCAA-CCA-TG-ATGCGATGCCCTGCAGCTAC-GTACCTGTGCCATTGCCCGTTAC-TGC-ATGCTCTACAAT-GG--TTTG-TGAGAATC-A-GAGTGGATTATAT-A-TGT-A--TTTGCACAACCGA-ATA-TTTCAAT-AA--TTCCACTCTGATTC-TGTGTC-GTAAGTCATATATATGTATTGTAAATC-GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC-GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACATTATAAAAAAAAANNA] [+] EMBL AK062553 [TAACAATTCAACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GAGTGGATTATAT A TGT A TTTGCACAACCGA ATA TTTCAAT AA TTCCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACAT ] [+] EMBL AU066308 [ AACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGNTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTNACGGATGTTACCACGCACGANTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGNTCGTGCCGTCGGCTTCTTT GNGCGCT CTNG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATNCCCTGCAGCTAC GTACCTGTG ] [+] EMBL AU066225 [ AACAACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGTTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTNTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GAGTGGA TATAT A TGT A TTT ] [+] EMBL AU066245 [ AACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTGTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATTCTCTACAAT GGT TTTT TGAGAATC ANGAGTGGATTATAT ATTGTAA TTTTCACAACCGG ATA TTTCAAT AA TTtc ] [+] EMBL AU066246 [ AACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT TCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTTGCCGTTACTTGCAATGCTCTACAAT GGGTTTTGTTGAGAATCAA GAGTNGATTATATAA TGT AATTTTGCACAACCGA ATATTTTCAAT AAATTTCCACTCTGATTC Tn ] [+] EMBL AU223373 [ ACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GAGTGGATTATAT A TGT A TTTGCACAACCGA ATA TTTCAAT AA TTCCACTCTGATTC TGTGTC GTAAGTCATAT ] [+] EMBL OS1321879 [ ACCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTNCCGTCGGCTTCTTT GCGCGCT CTGG ACT NCTCGTCGATG CT ATTGGCGTNTATGTCCAA CCA TN ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTNAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GAGTGGATTATAT A TGT A TTTGNACAACCGA ATA TTTCAAT AA TTNCACTCTGATTCTTTTGTC GTAAGTCATATATA ] [+] EMBL OSS1715A [ CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTNAAGATTGTCACGGATGTTACCACGNACGNGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGN CGNCGNTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT TCTCGTCGATG CT ATTGGCGTGTATNTCCAA CCATTG ATGCGATGNCCTNCAGCTACGGNACCTGTGCCATTNCCCGTTAC TGC ATGCTCTACAATGGG TTTT TGAGAATC A GAGTGGGTTATAT A TGT AT TTTGCACAACCGATAT TTTCAATAAA TTNCACTCTGATTtt ] [+] EMBL OSS2087A [ CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTNTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA ] [+] EMBL OS1321741 [ CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT A ] [+] EMBL OSS2185A [ CCATTCCATATAAAGAAGCATCGACATCGAGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTNAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTNAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTG ] [+] EMBL OSC0321 [ AGTACTACACAAAACGATCAAGTTTGGCCCTTCCGAGCGTGTGAAGGAAGTTTCTGGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTNACGTACCTGAAGATTGTCACGGATGTTACCACGCACGANTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTNCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TNAGAATC A GAGTGGATTATAT A TGT A TTTGCACAACCGA ATA TTTCAAT AA TTNCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTA ] [+] EMBL AU223331 [ GGAACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGACGTACCTGAAGATTGTCNCGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG ACT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GAGTGGATTATAT A TGT A TTTGCACAACCGA ATA TTTCAAT AA TTCCACTCTGATTC TGTGTCGGTAAGTCATATATATGTATTGTAAATCGGTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGCGGTTCTACCTGATAACCTCAAAaaaaaaa ] [+] EMBL AU033048 [ ACTCATGGCACGCTCCAAACCCTAGCGGATATTCTGANGTACCTGAAGATTGTCACGGATGTTACCACGCACGAGTTTGGTGTCCC GAATGGAAC GGCCTTCAGTGTCCCGCTCCAGGA CGACGCTCGTGCCGTCGGCTTCTTT GCGCGCT CTGG NCT GCTCGTCGATG CT ATTGGCGTCTATGTCCAA CCA TG ATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GNGTGGATTATAT A TGT A TTTGCACAACCGA ATA TTTCAAT AA TTCCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTNATTGAATAAAGAATTGTGGTNCATACCACATTATAAAAAAAAANNA] [+] EMBL AU161918 [ GGTGTCCCGGAATGGAACTGGCCTTCAGTGTCCCGGTTCAGGANCGACGCTCGT CCGTCGGNTTCTTTGGCGCGCTCCTGGAACTGGCTCGTCGATGCCTAATTGGCGTCTATGTCCAACCCATTGAATGCGATGCCCTGCAGCTAC GTACCTGTGCCATTGCCCGTTAC TGC ATGCTCTACAAT GG TTTG TGAGAATC A GAGTGGATTATAT A TGT A TTTGCACAACCGA ATA TTTCAAT AA TTCCACTCTGATTC TGTGTC GTAAGTCATATATATGTATTGTAAATC GTATATGTATTGTAAGTTGAGGGATCCTGCTGAGTCTGC GTTCTACCTGATAACCTCAAACCTTGCCTTGTTATTATTTACAAAGTGTGTGCCGTCATTGAATAAAGAATTGTGGTACATACCACATTATAAAAAAAAAaaa] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||