These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14179#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1117 fasta sequence [GATCTCGATCTCTTGGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT-GAGGAACCCAAGAGTGATC-ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA-GAGGAATGAATCGATGTGACGAATTCATGGACGC-TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTC-TTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAAAAAAAAAAAAAA] [+] EMBL BE039961 [GATCTCGATCTCTTGGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTNGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATNGTCAGGAGCACCGTGAAAGGACGGTGCGGCTNGCAAAGAACAGCGCGGTGCCAATGACCGTTGTGATTCCACCTGCAGTGCAAGAGATGAACATGGCAGAAAGCCGTGGTCCTGTTTTCCCCGGTATGGAGAACGAGGCACCATAAAACT TAAGGGTGAGCATGGAGGAACCCAA AGTGATCAACCATGATGTTGAGG GA ACCCTTTTATGGTGAATGAAAGAAAGA ATTCTTTCTGTTAATTGGAT GCAAGGAGG ATGAAATG TTTGGCGAAATAATTGGCGCTTTGGGAACAAT TTTTTGT ] [+] EMBL AK103196 [ GGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTC TTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGT ] [+] EMBL AK061092 [ ACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCAT ] [+] EMBL AK104399 [ TCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGGTGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGCGATACTCTTTC TTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGG ] [+] EMBL CA999023 [ CCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCAT GAGGAACCCAAGAGTGATC ACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCAA GAGGAATGAATCGATGTGACGAATTCATGGACGC TTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTC TTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAAAAAAAAAAAAAA] [+] EMBL AU069909 [ TGACGAATTCATGGACGC TTGGCGACGNTGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTNTC TTTNTTTTTTGTACTAGTATTAAAACTNCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCAaaaaaa ] consensusID : consensus_14179#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 984 fasta sequence [TCTGCCGGCGCCGGCGTTGGTA-GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGGTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGGCATC-TTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTTCA-TGTGACCCTTGCATGGTCCATT-GCTGC-TTGCACTGGTGCCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGATAGCAAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCAT] [+] EMBL AK061186 [TCTGCCGGCGCCGGCGTTGGTA GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATC TTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTCCA TGTGACCCTTGCATGGTCCATT GCTGC TTGCACTGGTG CGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGATAGCAAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCTTTCTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCAT] [+] EMBL AU063526 [ CGGCGTTGGTA GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCANCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGNCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTNAAATTCTCACCGNAATATTTCATGGTGTTGATNCCAGAACGTNTTTCCTG ] [+] EMBL AU063522 [ CGGCGTTGGTA GGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGANGNCCCCGNCCCCGTCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCANCTCGAGGGCANGAGGTGCAGCGAGTGCGGNCAGGTCCTNCCGGAATCCTACGAGCCCNCCNTCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTNCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGC ] [+] EMBL CA752719 [ GCGTTGGTA GGGTGGGCATGGCGGA GAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGT CCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTG CATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGAT CCA AACGTCTTT CTGATTGGAGAAAGGTTGGTGNT ACTGGTGGTTGTGTGGTACTT ] [+] EMBL CA752683 [ GCGTTGGTA GGGT GGCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTT CTGATTGGAGAAGGTTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGGCATC TTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTC TCA TGTGACCCTTGCATGGTCCATTGGTTGCTTTGCACTGGTGCCGCGAATTGTCAG ] [+] EMBL CA752686 [ gcTTGGTA GGG GGCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGGTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGGCATCTTTTCGCCCAGAACTTCAGAGGAAATACCATCT AAGAATTCTTCA TGTGACCCTTGCATGGTCCATT GCTGC TTGCACTGGTGCCCCGAATTGTAAGGAGCACCG ] [+] EMBL CA752710 [ gcTTGGTATGGGTAGCCATGGCGGAGGAGG GCCCT AGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAAGGTTGGTGTTCAACTGGTGGTTGTGTGG ACTTATACCGGCATCTTTTCG CAAGAACTTTAAAGGAAATACCAT TTAAGAATTCTTCATTGTGACCCTT ] consensusID : consensus_14179#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 712 fasta sequence [CTCGATCTCCTTTAAAGTGCCGGCGCCGGNGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGGCACTCTCCATCCATCCTCTTTTCCCCTATCTTACTTGTCATCATCTCATCTGATCTGCTCCTCTCGATCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGGTGAAATCATGAAAATCCTTTACTGCTTCATTGTCTATATTCCACTTGACTGTTATTCAGACAAAGTGATCCCATGACCTGTATATTT] [+] EMBL CB652534 [CTCGATCTCCTTTAAAGTGCCGGCGCCGGNGTTGGTAGGGTAGCCATGGCGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCCCCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGGCACTCTCCATCCATCCTCTTTTCCCCTATCTTACTTGTCATCATCTCATCTGATCTGCTCCTCTCGATCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCTTGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGGTGAAATCATGAAAATCCTTTACTGCTTCATTGTCTATATTCCACTTGACTGTTATTCAGACAAAGTGATCCCATGACCTGTATATTT] consensusID : consensus_14179#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 510 fasta sequence [GGACCATGCCAGAAACCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAACCCACAGAGTGATCACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCACAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACCAGGGTGATACTCTTTCTTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAGCTGTGTTTGACACTTGTGACCTTCATTGGTCCTAAGAGAAACAGTTAATTCGTCTGTCCATGTAGTAAGTTTGTTCTTAAGAACAAATACAAAAAAAAAA] [+] EMBL BI798888 [GGACCATGCCAGAAACCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAACCCACAGAGTGATCACGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAGATATTCTTTCTGATAATAGGATAGCACAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGCGACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACCAGGGTGATACTCTTTCTTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTAAAATTCATTCTTGATTTTAGCTGTGTTTGACACTTGTGACCTTCATTGGTCCTAAGAGAAACAGTTAATTCGTCTGTCCATGTAGTAAGTTTGTTCTTAAGAACAAATACAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14179#0 GATCTCGATCTCTTGGACTCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGGCGGAGGAG 60 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 GCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGAGCACGACGCCCCCGCC 120 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 CCCGCCGAGGACATCCGCCCCGGCGAGCTCAACCAGCCAGTCCACGTCCCGCAGCTCGAG 180 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 GGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGGAATCCTACGAGCCCCCCGCCGAC 240 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 GAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACGATCCACAAACCTGCCGAACTGGG 300 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 TTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTGAGGCCCTCAGAGAGGATATCCCT 360 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 TGGACAACGCCTTGTGTTTGCCATGCTGTCTTTGTTGAAGGAGGGATTGCGCTTGCAATT 420 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 CTCACCGCAATATTTCATGGTGTTGATCCCAGAACGTCTTTCCTGATTGGAGAAGGTTTG 480 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 GTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGGCATCTTTCGCCAAGAACTTCAGAGG 540 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 AAATACCATCTCAAGAATTCTCCATGTGACCCTTGCATGGTCCATTGCTGCTTGCACTGG 600 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 ------------------------------------------------------------ consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 TGCGCGAATTGTCAGGAGCACCGTGAAAGGACGGGGCGGCTTGCAGAGAACAGCGCGGTG 660 consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 --------------------------TCTGCCGGCGCCGGCGTTGGTAGGGTAGCCATGG 34 consensus_14179#2 -----------CTCGATCTCCTTTAAAGTGCCGGCGCCGGNGTTGGTAGGGTAGCCATGG 49 consensus_14179#0 CCAATGACCGTTGTGAATCCACCTGCAGTGCAAGAGATGAGCATGGCAGAAAGCCGTGGT 720 consensus_14179#3 -------------------------------------GGACCATGCCAGAAA-CCGTGGT 22 consensus_14179#1 CGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGA-GCACGAC 93 consensus_14179#2 CGGAGGAGGCCACCCTGAGCCACCCGTCGCGGTACGTGAAGCTGAGCAGGGA-GCACGAC 108 * * *** * * * consensus_14179#0 CCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAA 780 consensus_14179#3 CCTGTTTCCCCCGGTATGGAGAACGGAGCACCATCAAACTCAAAGGGTGAGCATGAGGAA 82 consensus_14179#1 GCCCCCGCCCCCGCCGAGGACATCC--GCCCCGGCGAGCTCAACCAGCCAGTCCACGTCC 151 consensus_14179#2 GCCCCCGCCCCCGCCGAGGACATCC--GCCCCGGCGAGCTCAACCAGCCAGTCCACGTCC 166 * ****** *** * * ** ** * * ***** * ** * consensus_14179#0 CCCA-AGAGTGATCA-CGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAG 838 consensus_14179#3 CCCACAGAGTGATCA-CGATGATGTGGAGGTGATACCTCTATAGGGTGAATGAAAGAAAG 141 consensus_14179#1 CGCAG------------------------------------------------------- 156 consensus_14179#2 CGCAGGCACTCTCCATCCATCCTCTTTTCCCCTATCTTACTTGTCATCATCTCATCTGAT 226 * ** consensus_14179#0 ATATTCTTTCTGAT-AATAGGATAGCA-AGAG------GAATGAATCGATGT---GACGA 887 consensus_14179#3 ATATTCTTTCTGAT-AATAGGATAGCACAGAG------GAATGAATCGATGT---GACGA 191 consensus_14179#1 -----------------CTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGG 199 consensus_14179#2 CTGCTCCTCTCGATCAGCTCGAGGGCAGGAGGTGCAGCGAGTGCGGCCAGGTCCTGCCGG 286 ** *** * ** ** * * ** * ** consensus_14179#0 ATTCATGGACGCTTGGCGACGATGT-TCTTGTGTCATCTGGAACTGGA---------ATC 937 consensus_14179#3 ATTCATGGACGCTTGGCGACGATGT-TCTTGTGTCATCTGGAACTGGA---------ATC 241 consensus_14179#1 AATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACG 259 consensus_14179#2 AATCCTACGAGCCCCCCGCCGACGAGCCCTGGACCACCGGGATCTTCGCCTGCACCGACG 346 * ** * ** ** *** * * ** ** * *** ** * consensus_14179#0 ATCATAAAACACAC-AGGGTGA--TACTCTTTCTTT----TTTTTTTGTAC-TAGTATTA 989 consensus_14179#3 ATCATAAAACACACCAGGGTGA--TACTCTTTCTTT----TTTTTTTGTAC-TAGTATTA 294 consensus_14179#1 ATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTG 319 consensus_14179#2 ATCCACAAACCTGCCGAACTGGGTTGTTCTGTCCTTGTGTTCTTTTTGGACGCAATATTG 406 *** **** * ** * *** ** ** * ****** ** * **** consensus_14179#0 AAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTG 1049 consensus_14179#3 AAACTTCAAATATAATTAACTGGAGAGCAGGGGCTGCCTGAGTACATTGCTACGTTTCTG 354 consensus_14179#1 AGGCCCTCAGAGAGGATATCCCTTGGACAACGCCT-TGTGTTTGCCATGCTGTCTTTGTT 378 consensus_14179#2 AGGCCCTCAGAGAGGATATCCCTTGGACAACGCCT-TGTGTTTGCCATGCTGTCTTTGTT 465 * * * ** * * ** * ** ** * * **** *** * consensus_14179#0 CATCCACCGGCCGTG--TGTTGTT----------TATGCCATCATGTAAAATTCA----- 1092 consensus_14179#3 CATCCACCGGCCGTG--TGTTGTT----------TATGCCATCATGTAAAATTCA----- 397 consensus_14179#1 GAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACG 438 consensus_14179#2 GAAGGAGGGATTGCGCTTGCAATTCTCACCGCAATATTTCATGGTGTTGATCCCAGAACG 525 * * * * * ** ** *** *** *** * ** consensus_14179#0 ---TTCTTGATTTTAAAAAAAAAAAAAA-------------------------------- 1117 consensus_14179#3 ---TTCTTGATTTTAGCTGTGTTTGACACTTG--TGACCTTCAT-TGGTCCTAAGAGAAA 451 consensus_14179#1 TCTTTCCTGATTGGAGAAG-GGTTGGTGTTCAACTGGTGGTTGTGTGGTACTTATACGGG 497 consensus_14179#2 TCTTTCCTGATTGGAGAAG-GTTTGGTGTTCAGCTGGTGGTTGTGTGGTACTTATACGGG 584 *** ***** * consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 CAGTTAATTCGTCTGTCCATGTAGTAAGTTTGTTCTTAAGAACAAATACAAAAAAAAAA- 510 consensus_14179#1 CATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGAATTCTT-CATGTGACCCTT 556 consensus_14179#2 CATCTTTCGCCAAGAACTTCAGAGGAAATACCATCTCAAGGTGAAAT-CATGAAAATCCT 643 consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 GCATGGTCCATTGCTGCTTGCACTGGTGCCGCGAATTGTCAGGAGCACCGTGAAAGGACG 616 consensus_14179#2 TTACTGCT--TCATTGTCTATATTCCACTTGACTGTTATTCAGA------CAAAGTGATC 695 consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 GGGCGGCTTGCAGAGAACAGCGCGGTGCCAATGACCGTTGTGAATCCACCTGCAGTGCAA 676 consensus_14179#2 CCATGACCTGTATATTT------------------------------------------- 712 consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 GAGATGAGCATGGCAGAAAGCCGTGGTCCTGTTTCCCCCGGTATGGAGAACGGAGCACCA 736 consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 TCAAACTCAAAGGGATAGCAAGAGGAATGAATCGATGTGACGAATTCATGGACGCTTGGC 796 consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 GACGATGTTCTTGTGTCATCTGGAACTGGAATCATCATAAAACACACAGGGTGATACTCT 856 consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 TTCTTTTTTTTTGTACTAGTATTAAAACTTCAAATATAATTAACTGGAGAGCAGGGGCTG 916 consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 ------------------------------------------------------------ consensus_14179#3 ------------------------------------------------------------ consensus_14179#1 CCTGAGTACATTGCTACGTTTCTGCATCCACCGGCCGTGTGTTGTTTATGCCATCATGTA 976 consensus_14179#2 ------------------------------------------------------------ consensus_14179#0 -------- consensus_14179#3 -------- consensus_14179#1 AAATTCAT 984 consensus_14179#2 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||