These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14184#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 2021 fasta sequence [ACGCGCTGAGGCCTGTGAAAGGAAAGGAAAGGAAAGGAGAGGAGTGGAGGCGAGGCGGCGGCGGCGGCGAGATCCACACATGACACATCTCGAGGCGCGCGGCACCACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG-AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC-ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT-GTTGTACCATTTTT-CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTGTTGACCCGCCAAAAA] [+] EMBL AK069126 [ACGCGCTGAGGCCTGTGAAAGGAAAGGAAAGGAAAGGAGAGGAGTGGAGGCGAGGCGGCGGCGGCGGCGAGATCCACACATGACACATCTCGAGGCGCGCGGCACCACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTG ] [+] EMBL CB672834 [ gagtgaccaGGCACCACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTG ] [+] EMBL AK105717 [ GCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATGCAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGGTGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACATGGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGGAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTT ] [+] EMBL CA998453 [ aagATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCCAGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGCGCAATTTCACCCAAATCAGTACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAGTGCTCTTATCCCTTGGAGAGGATCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTTCAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGACTCCAGCTGGTAGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATT ] [-] EMBL CB672835 [ GAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCGCATCATTTTTCACTGTAGCAAATTTTGATGAG ] [-] EMBL CB672837 [ GTATACCAGAGTCCAGCTGG AGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAGAATATCAGCTAAGAATACATGATTCAGAGAAGTACCGCAGCC ACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACCGGCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCGCATCATTTTTCACTGTAGCAAATTTTGATGAG ] [+] EMBL AU172996 [ ATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCCATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTACCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTTTTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTATTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATCAAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTGCAGAACGTAGTAGATACAACTGGTTTGGCAGTATGAATCACTTAGATCATACAAACTAG ] [+] EMBL BI795188 [ ATACATGATTCAGAGAAGTACTGCAGCCAACTTTAATATGGTTGAAAGTTGGTACCCAGTTCGGTGTGTTACC GCAAACATTGCCCATTGGTTCGAGACCGGGGCTGGTGCCACGTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCACTGGAAGCACC AAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAGTTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGTAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAaa ] [+] EMBL C98712 [ TTGAACCTGTCACTGGAAGCACCAAAAAGGGTTGGNTTTCCCTGTGGTTGTACCATTTTTNCATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTCTCTTGAGTGTTGACCCGCCAAAAA] [-] EMBL D42226 [ GCTGTCACT GAAGCACAAAAAGGGTTTGGTTTTCTCTGT GTTGTACCATTTTT CATTTGCACGGCACTTGAAATCTATACTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGAAAATTTTAATAATTTCAATGGCTCCAGCTCCTGTta ] consensusID : consensus_14184#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence [GAGTGACCCCTTAAACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCCAGGGGGACGGCGAGGCGGCGGCCGCCGACTCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCAGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGGGAAGTTTGTGGTGCATTGCATGCTATCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAGAACTTGAGATGCAAGACTTTGCAAGGTTGGATTATCACTTCACATTCATCTCGCTCTGGAGTTATTGACGGTGACAGCAACTCTTTTAGGAATGACTTC] [+] EMBL CB672836 [GAGTGACCCCTTAAACCACCGCCATGGGAGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAGGAGGAGGAGGATGACCTCGTCCAGGGGGACGGCGAGGCGGCGGCCGCCGACTCCATGGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCAGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATACTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGGTGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTTGCAGAATCCTCAAAGACTGGCTAGGGAAGTTTGTGGTGCATTGCATGCTATCATACAACCTGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAGAACTTGAGATGCAAGACTTTGCAAGGTTGGATTATCACTTCACATTCATCTCGCTCTGGAGTTATTGACGGTGACAGCAACTCTTTTAGGAATGACTTC] consensusID : consensus_14184#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 528 fasta sequence [TGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTNGCACGAATGTAGTATGATACCCANCTGGTTTGGCAGTATGAATCACCTTAGATCATACCNCATACNCTAGAATATCCACGCTAACGAATANCATGATTCACGAGAAGTACCTGCACGCCACCTTTAATATTGGTTGAAAGTTGGTATCCCACGTTCGGTGTGTTACCGGCACAACACTTGCCCACTTGGTTCGAGACCGGGGCTGGTGCCACCGTCTCTNCTGGAAGGAAAATGTCCACTTTGCTTGGTGAGGGAAAATTTTCGTCACCACTGGAAGATTATATTGAAGCTGTCACTGGAAGCACCCACAAAGGGTTTGGTTTTCTCTGTGTTGTACCATTTTTCATTTGCACGGCACTTGAAATCTATACTGCACTAGTTGCAGATGTGCCGAGAAAGATATANACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGTAAATTTTGATGAGATCAAAAAA] [+] EMBL BQ908734 [TGCAACGATTGCAGTTCTGGGTCAGTTTTTGACGGACCCTTCTGCCAAGGCACGCTTTCTNGCACGAATGTAGTATGATACCCANCTGGTTTGGCAGTATGAATCACCTTAGATCATACCNCATACNCTAGAATATCCACGCTAACGAATANCATGATTCACGAGAAGTACCTGCACGCCACCTTTAATATTGGTTGAAAGTTGGTATCCCACGTTCGGTGTGTTACCGGCACAACACTTGCCCACTTGGTTCGAGACCGGGGCTGGTGCCACCGTCTCTNCTGGAAGGAAAATGTCCACTTTGCTTGGTGAGGGAAAATTTTCGTCACCACTGGAAGATTATATTGAAGCTGTCACTGGAAGCACCCACAAAGGGTTTGGTTTTCTCTGTGTTGTACCATTTTTCATTTGCACGGCACTTGAAATCTATACTGCACTAGTTGCAGATGTGCCGAGAAAGATATANACACAGAAGCAATGTTTGTCACATCATTTTTCACTGTAGTAAATTTTGATGAGATCAAAAAA] consensusID : consensus_14184#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 283 fasta sequence [TAAACATTTGCCCNTTGGTTCGAGNCCGGGGCTGGTGCCNCNTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGNTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGTNCCATTTTTCATTTGCACGGCACTTGAAATCTATNCTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCNCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU030838 [TAAACATTTGCCCNTTGGTTCGAGNCCGGGGCTGGTGCCNCNTCTCTCTGGAAGGAAAATGTCCATTTGCTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGNTGTCACTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGTNCCATTTTTCATTTGCACGGCACTTGAAATCTATNCTGCACTAATTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCNCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_14184#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 250 fasta sequence [CTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCCCTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGNACCNTTTTTCATTTGCCCGGCCCTTGAAATCTATNCTGCNCTAATTGCAGATGTGCCGAGAAAGATATATNCCCAGAAGCAATGTTTGTCCCATCATTTTTCNCTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAAAAA] [+] EMBL AT003537 [CTTGGTGAGGGAAAATTTTCGTCACATGGAAGATTATATTGAAGCTGTCCCTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGNACCNTTTTTCATTTGCCCGGCCCTTGAAATCTATNCTGCNCTAATTGCAGATGTGCCGAGAAAGATATATNCCCAGAAGCAATGTTTGTCCCATCATTTTTCNCTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAAAAA] [+] EMBL AT003700 [CTTGGTGAGGGAAAATTTTNGTCNCATGGAAGATTATATTGAAGCTGTCNCTGGAAGCACCAAAAGGGTTTGGTTTTCTCTGTGTTGNACCATTTTTCATTTGCNCGGCNCTTGAAATNTATACTGCNCTAATTGCAGATGTGCCGAGAAAGATATATACNCAGAAGCAATGTTTGTCNCATCNTTTTTCNCTGTAGCAAATTTTNATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 ACGCGCTGAGGCCTGTGAAAGGAAAGGAAAGGAAAGGAGAGGAGTGGAGGCGAGGCGGCG 60 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GCGGCGGCGAGATCCACACATGACACATCTCGAGGCGCGCGGCACCACCACCGCCATGGG 120 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 AGCGCTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGA 180 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GGAGGAGGAGGAGGATGACCTCGTCGAGGGGGACGGCGAGGCGGCGGCCGCCGACGCCAT 240 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GGAGCCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCT 300 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GCGGAGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCA 360 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 AAAAGTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGAC 420 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TGGTTCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGATCTTTTCTCATA 480 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 CTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGG 540 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTT 600 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GCAGAATCCTCAAAGACTGGCTAGTGAAGTTTGTGGTGCATTGCATGCTAGCATACAACC 660 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAAAACTTGAAATG 720 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 CAAGACTTTGCAAGGTTGGATTAGCACTTCACATTCATCTCGCTCTGGAGTTTTTGAGGG 780 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TGAGAGCAGCTCTTTTTGGAATGACTTCTCAGCCCTTCTTAAGCTTAGGGGCATAGACAT 840 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GGAGAGGGACAGCCATTCTGCCTCCATAGCTTGGTGCCCTTTAAGGTCTCATGATGTCCC 900 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 AGTCTGCAATGGGCACTGCAAGAAGGCTACAACCAACGGTGCAATTTCACCCAAATCAGT 960 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 ACCAGCTCCCTCTAATATGGTTTCTGCTGTTAGCTCAATGCTCTTATCCCTTGGAGAGGA 1020 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TCCCTTCAGGAAAGAACTTGTAGGTACTCCTCAGCGTTACGTGCAATGGCTGATGAAGTT 1080 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 CAGAGCATGTAACCTAGATGTGAAGCTGAATGGCTTTACACTCAATAATTTGAGTGTATA 1140 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 CCAGAGTCCAGCTGGAGATGCTGCTGACCATCGAGCAATCCATTCTGAGCTGCATTTGCC 1200 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 ATTTTGTGCGCAGTGCGAGCACCATCTTCTGCCGTTCTATGGAGTAGTGCATATTGGCTA 1260 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 CCTTGACGGCGGAGATGGTGAAGTGATTGATCGATCTCATTTTCAGGCCTTGGTTCATTT 1320 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TTATGGATGCAAGCTTCAGGTTCAAGAGAGAATGACAAGGCAGATAGCTGAAGCAGTTTA 1380 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TTCTGTTTCGCATTGTGGGGCCATAGTTGTTGTAGAAGCTAACCACATTTGCATGATATC 1440 consensus_14184#1 ------------------------------------------------------------ consensus_14184#2 ------------------------------TGCAACGATTGCAGTTCTGGGTCAGTTTTT 30 consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 AAGGGGAATAGAGAAAATCAGGAGTAGCACTGCAACGATTGCAGTTCTGGGTCAGTTTTT 1500 consensus_14184#1 ----------------------------GAGTGACCCCTTAAACCACCGCCATGGGAGCG 32 consensus_14184#2 GACGGACCCTTCTGCCAAGGCACGCTTTCTNGCACGAATGTAGTATGATACCCANCTGGT 90 consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 GACGGACCCTTCTGCCAAGGCACGCTTTCTGC-----AGAACGTAGTAGATACAACTGGT 1555 consensus_14184#1 CTCGAGGAGGCCCACCTCGCCGCCGCCATCTCCGCGTGCGAGTGCGAGTGCTACGAGGAG 92 consensus_14184#2 TTGGCAGTATGAATCACCTTAGATCATACCNCATACNCTAGAATATCCACGCTAACGAAT 150 consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TTGGCAGTATGAATCACTT------AGATCATACAAACTAGAATATCAGCTA-------- 1601 consensus_14184#1 GAGGAGGAGGATGACCTCGTCCAGGGGGACGGCGAGGCGGCGGCCGCCGACTCCATGGAG 152 consensus_14184#2 ANCATGATTCACGAGAAGTACCTGCACGCCACCTTTAATATTGGTTGAAAGTTGGTATCC 210 consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 AGAATACATGATTCAGAGAAGTACCGCAGCCACTTTAATAT-GGTTGAAAGTTGGTACCC 1660 consensus_14184#1 CCGGCGGTGCGCGCGCTGCTGCTGGGGCTCGGCGAGGACGCGCGCCGGGAGGGGCTGCAG 212 consensus_14184#2 CACGTTCGGTGTGTTACCGGCACAACACTTGCCCACTTGGTTCGAGAC--CGGGGCTGGT 268 consensus_14184#3 ---------------------TAAACATTTGCCCN-TTGGTTCGAGNC--CGGGGCTGGT 36 consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 A--GTTCGGTGTGTTACCGGC-AAACA-TTGCCCA-TTGGTTCGAGAC--CGGGGCTGGT 1713 consensus_14184#1 AGGACGCCCAAGCGCGTCGCCAAGGCCTTCCGCGACGGCACCCGAGGTTACAAGCAAAAA 272 consensus_14184#2 GCCACCGTCTCTNCTGGAAGGAAAATGTCCACTTTGCTTGGTGAGGG-AAAATTTTCGTC 327 consensus_14184#3 GCCNCN-TCTCTC-TGGAAGGAAAATGTCCA-TTTGCTTGGTGAGGG-AAAATTTTCGTC 92 consensus_14184#4 ------------------------------------CTTGGTGAGGG-AAAATTTTCGTC 23 consensus_14184#0 GCCACG-TCTCTC-TGGAAGGAAAATGTCCA-TTTGCTTGGTGAGGG-AAAATTTTCGTC 1769 consensus_14184#1 GTAAAGGACATTGTGCAGGGGGCTCTCTTTCCTGAGGTTGGTGTTGACAAGAGGACTGGT 332 ****** * ** * * consensus_14184#2 ACCACTGGAAGA-TTATATTG-AAGCTGTCACTGGAAGCACCCACAAAGGGTTTGGTTTT 385 consensus_14184#3 ACA--TGGAAGA-TTATATTG-AAGNTGTCACTGGAAGCACCAA--AAGGGTTTGGTTTT 146 consensus_14184#4 ACA--TGGAAGA-TTATATTG-AAGCTGTCCCTGGAAGCACCAA--AAGGGTTTGGTTTT 77 consensus_14184#0 ACA--TGGAAGA-TTATATTG-AAGCTGTCACTGGAAGCACCAA--AAGGGTTTGGTTTT 1823 consensus_14184#1 TCTGCTGGAGGAACTGGAGGGCAAGTTGTTGTTCGTGATATTGA----TCTTTTCTCATA 388 * **** ** * * * *** *** * * * * *** * consensus_14184#2 CTCTGTGTTGTACCATTTTTCATTT-GCACGGCACTTGAAAT---CTATAC-TGCACTAG 440 consensus_14184#3 CTCTGTGTTGTNCCATTTTTCATTT-GCACGGCACTTGAAAT---CTATNC-TGCACTAA 201 consensus_14184#4 CTCTGTGTTGNACCNTTTTTCATTT-GCCCGGCCCTTGAAAT---CTATNC-TGCNCTAA 132 consensus_14184#0 CTCTGTGTTGTACCATTTTTCATTT-GCACGGCACTTGAAAT---CTATAC-TGCACTAA 1878 consensus_14184#1 CTGTGAGTCATGCTTACTTCCATTCAGCATACAATTCCATGTTGGCTATGTGCCCTCTGG 448 ** ** ** * ** **** ** * * * **** * ** consensus_14184#2 TTGCAGATGTGCCGAGAAAGATATANACACAGAAGCAATGTTTGTCA-CATCATTTTTCA 499 consensus_14184#3 TTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCN-CATCA------A 254 consensus_14184#4 TTGCAGATGTGCCGAGAAAGATATATNCCCAGAAGCAATGTTTGTCC-CATCATTTTTCN 191 consensus_14184#0 TTGCAGATGTGCCGAGAAAGATATATACACAGAAGCAATGTTTGTCA-CATCATTTTTCA 1937 consensus_14184#1 TGGAAGGGTTGTTGGGTTAAGCAAGCTTTCGAGAGTAGCTGATGTCTTCGCCAAGAGGTT 508 * * ** ** * * * * * ** * **** * ** consensus_14184#2 CTGTAGTAAATTTTGATGAGATCAAAAAA------------------------------- 528 consensus_14184#3 AAAAAAAAAAAAAAAAAAAAAAAAAAAAA------------------------------- 283 consensus_14184#4 CTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAAAAAAAAAAAAAAAA- 250 consensus_14184#0 CTGTAGCAAATTTTGATGAGATCAATGGCTCCAGCTCCTGTGAAATGAATGTGATTGTTC 1997 consensus_14184#1 GCAGAATCCTCAAAGACTGGCTAGGGAAGTTTGTGGTGCATTGCATGCTATCATACAACC 568 * * consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 TCTTGAGTGTTGACCCGCCAAAAA------------------------------------ 2021 consensus_14184#1 TGCTGGTGTGGCTGTTGCTCTGCAATGTTGGCACATACCTTTGCCAGAGAACTTGAGATG 628 consensus_14184#2 ------------------------------------------------------------ consensus_14184#3 ------------------------------------------------------------ consensus_14184#4 ------------------------------------------------------------ consensus_14184#0 ------------------------------------------------------------ consensus_14184#1 CAAGACTTTGCAAGGTTGGATTATCACTTCACATTCATCTCGCTCTGGAGTTATTGACGG 688 consensus_14184#2 ---------------------------- consensus_14184#3 ---------------------------- consensus_14184#4 ---------------------------- consensus_14184#0 ---------------------------- consensus_14184#1 TGACAGCAACTCTTTTAGGAATGACTTC 716 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||