These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14188#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 1840 fasta sequence [CCTTTTAGGTTTTTTTTTTGACACAGTCATCACCGCATGCCCTTTCAAGCACAGGCCTTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAAT-CTGCACTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAA-CCCAGGCCTAGTTG-CCTTCTCCTCCATAGCCCAAACCCCATACTTGGCCTAAAT------CTGATAGTGCTAATGTATGACGACCACCAGCAGCTACTGCCATTATTTTAACTCCTGTATTAAATGTCACTACACAAGGGGGTGCTGAAAGGTTTTCATCACTGGACGTTGAACTTTCGGGTGCATGTTTGGTTGAAGACAA-CNTCGTCTCTTCGTGCTATCATCAGTACCTCTA-TTTCAGAAGGACCAGATGCTG-TCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCA---CTTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTGGTCAGAAATGACCCTTCCTGTTGGAACACATTCTTTCCAACCCCATGTATAGACATCCCCTTCATCAGTTATTGCAACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTCACTAGGAAGTGGAAAAGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACATAGCTTTGGCCCATATCATCAGCAGAACCCCAAGTGAGGAGTTTACCAGACTCTGAGATGGCCATGGCGAAGCCGCAGCCGCCTCCGCATACGTCCCTCCACCCATCGCCGCCCGCCGCGGCCGGTAGCCTCACGGGTACGGGCCCGAGCAGCGGGGAGCGCTGCGGCGAGACGCCGGGGAGGTACCCCCACATAAGCACCACCCGCTCCTTCCTCCCCGCAGAAACCCGCGCGCGAAGCCCGGCGCCGTCCTCCTCCATCTCCATCTGCTCCTCGCCTCCCGCTCCCACCACCCCCACGCCTCCGCCTNCCGCGCCGCCGCGGCCGTTCATCTCCTCGGNAGCACCCGTCCTCCCCGTATCCGCCGCCGATTCCTCCGCTACCTTC] [+] EMBL CB622366 [CCTTTTAGGTTTTTTTTTTGACACAGTCATCACCGCATGCCCTTTCAAGCACAGGCCTTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGA ] [+] EMBL CB666912 [ GCCTTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAAAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAAT CTGCACTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGC ] [+] EMBL CB660576 [ GCCTTACAGCCATTCCTACCCAACTCTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAAT CTGCACTTCAGCACTTTT ] [-] EMBL AK063080 [ CTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCT ] [+] EMBL CB622747 [ tcctTTTTTTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAAT CTGCGCTTCAGCACTTTT ] [+] EMBL CB622746 [ AGCGCACCGGAAAGAATGCCTCTTCCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATAGACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAATCCTGCGCTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCC ] [-] EMBL AU063373 [ TGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCNACATGCAATGGCCTTCACGCAATTTCCCATGAC TTGCTAAT CTGCACTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAACCCCAGGCCTAGTTG CCTTCTCCTCCATAGCCCAAACCCCATACTTGGCCTAAAT CTGATAGTGCTAATGTATGACGACCACCAGCAGCTACTGCCATTATTTTAACTCCTGTATTAAATGTCACTACACAAGGGGGTGCTGAAAGGTTTTCATCACTGGACGTTGAACTTTCGGGTGCATGTTTGGTTGAAGACAA CNTCGTCTCTTCGTGCTATCATCAGTACCTCTA TTTCAGAAGGACCAGATGCTG TCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCA CTTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTGGTCAGAAATGACCCTTCCTGTTGGAACACATTCTTTCCAACCC ] [-] EMBL CB660575 [ CTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAAT CTGCACTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAA CCCAGGCCTAGTTGCCCTTCTCCTCCATAGCCCCAACCCCATACTTGGCCTAAATCTGAAGCTGATAGTGCTAATGTATGACGACCACCAGCAGCTACTGCCATTATTTTAACTCCTGTATTAAATGTCACTACACAAGGGGGTGCTGAAAGGTTTTCATCACTGGACGTTGAACTTTCGGGTGCATGTTTGGTTGAAGACAACCTTCGTCTCTTCGTGCTATCATCAGTACCTCTACTTTCAGAAGGACCAGATGCTGCTCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCA CTTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTGGTCAGAAATGACCCTTCCTGTTGGAACACATTCTTTCCAACCCCATGTATAGACATCCCCTTCATCAGTTATTGCAACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTCACTAGGAAGTGGAAAAGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACATAGCTTTGGCCCATATCATCAGCAGAACCCCAAGTGAGGAGTTTACCAGACTCTGAGATGGCCATGGCGAAGCCGCAGCCGCCTCCGCATACGTCCCTCCACCCATCGCCGCCCGCCGCGGCCGG ] [-] EMBL CB679478 [ CAGTACTTCTACTTCCAGAAGGACCAGATGCTGCTCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCACACCTTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTGGTCAGAAATGACCCTTCCTGTTGGAACCGATTCTTTCCAACCCCATGTATAGACATCCCCTTCATCAGTTATTGCAACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTCACTAGGAAGTGGAAAAGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACATAGCTTTGGCCCATATCATCAGCAGAACCCCAAGTGAGGAGTTTACCAGACTCTGAGATGGCCATGGCGAAGCCGCAGCCGCCTCCGCATACGTCCCTCCACCCATCGCCGCCCGCCGCGGCCGGTAGCCTCACGGGTACGGGCCCGAGCAGCGGGGAGCGCTGCGGCGAGACGCCGGGGAGGTACCCCCACATAAGCACCACCCGCTCCTTCCTCCCCGCAGAAACCCGCGCGCGAAGCCCGGCGCCGTCCTCCTCCATCTCCATCTGCTCCTCGCCTCCCGCTCCCAC ] [-] EMBL OSS14517A [ CGCNCGCCGCGGCCGGTAGCCTTACGGGTACGGGNCCGAGCAGCGGGGAGCGCTGCGGCGAGACGCCGGGGAGGTACCCCCANATAAGCACCACCCGCTCCTTCCTCCCCGGAGAAANCCGCGCGCGAAGCCCGGCGCCGTCCTCCTCCATCTCCATCTGCTNCTCGCCTCCCGCTCCCACCACCCCCACGCCTCCGCCTNCCGCGCCGCCGCGGCCGTTCATCTCCTCGGNAGCACCCGTCCTCCCCGTATCCGCCGCCGATTCCTCCGCTACCTTC] consensusID : consensus_14188#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1037 fasta sequence [TTTTTTTGAGGGAAAATTAACACGAANACCGTCAAATTCTGAAGGATTTCAGAGGCGGGAGCAGAAATGTATAGCTCATCAGCCCCATACATGATCGTCCCTGTTCTAGCGTAATCAGCGTTCCGGTTAATTTCGTCTGCATATAGCAACCGGTTAATTTCGTCTGCATATAGCAACTGGAAAATGCAAGACGAAGCATGGACACAGTCATCACCGCATGCACTTTCAAGCACAGGCCTTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGC-GAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAATCTGCGCTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAACCCAGGCCTAGTTGCCCTTCTCCTCCATAGCCCCAACCCCATACTTGGCCTAAATCTGAAGCTGATAGTGCTAATGTATGACGACCACCAGCAGCTACTGCCATTAT] [-] EMBL AU092957 [TTTTTTTGAGGGAAAATTAACACGAANACCGTCAAATTCTGAAGGATTTCAGAGGCGGGAGCAGAAATGTATAGCTCATCAGCCCCATACATGATCGTCCCTGTTCTAGCGTAATCAGCGTTCCGGTTAATTTCGTCTGCATATAGCAACCGGTTAATTTCGTCTGCATATAGCAACTGGAAAATGCAAGACGAAGCATGGACACAGTCATCACCGCATGCACTTTCAAGCACAGGCCTTACAGCCATTCCTACCCAACTGNATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTGACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGGAGCACCAAGGTGTGCCACCAACCGCACGNCACATTCAGTGGGTGGGATGCGTCGACAGGAANACTGCAAGGCACGNTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATNCCCAGCAGAAGA ] [+] EMBL CB618318 [ CACTTTCAAGCACAGGCCTTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGC GAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAATCTGCGCTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAACCCAGGCCTAGTTGCCCTTCTCCTCCATAGCCCCAACCCCATACTTGGCCTAAATCTGAAGCTGATAGTGCTAATGTATGACGACCACCAGCAGCTACTGCCATTAT] [+] EMBL CB618352 [ CACTTTCAAGCACAGGCCTTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTGTACGTTGCCCGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGC GAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTGTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAATCTGCGCTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAACCCAGGCCTAGTTG ] consensusID : consensus_14188#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 808 fasta sequence [TTTTAACTCCTGTATTAAATGTCACTACACAAGGGGGTGCTGAAAGGTTTTCATCACTGGACGTTGAACTTCGGGGTGCATGTTTGGTTGAAGACAACCTTCGTCTCTTCGTGCTATCATCAGTACCTCTACTTTCAGAAGGACCAGATGCTGCTCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCACTGTAATGGAGTTGCCTTTGTTATATCTTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTGGTCAGAAATGACCCTTCCTGTTGGAACACATTCTTTCCAACCCCATGTATAGACATCCCCTTCATCTGGTCCAGTATGACATTTACGAAATTACTAGTAACACAAAAATTATGAGCTCTTGCTGTCCTAAAGTACGCTATGTGTGTTCAACTAGTAGTATACCAGTTATTGCAACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTCACTAGGAAGTGGAAAAGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACATAGCTTTGGCCCATATCATCAGCAGAACCCCAAGTGAGGAGTTTACCAGACTCTGAGATGGCCATGGCGAAGCCGCAGCCGCCTCCGCATACGTCCCTCCACCCATCGCCGCCCGCCGCGGCCGGTAGCCTCACGGGTACGGGCCCGAGCAGCGGGGAGCGCTGCGGCGAGACGCCGGGGAGGTACCCCCACATAAGCACCACCCGCTCCTTCCTCCCCGCAGAAACCCGCGCGCGAAGCCCGGCGCCGTCCTCGTCCAT] [-] EMBL CB666911 [TTTTAACTCCTGTATTAAATGTCACTACACAAGGGGGTGCTGAAAGGTTTTCATCACTGGACGTTGAACTTCGGGGTGCATGTTTGGTTGAAGACAACCTTCGTCTCTTCGTGCTATCATCAGTACCTCTACTTTCAGAAGGACCAGATGCTGCTCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCACTGTAATGGAGTTGCCTTTGTTATATCTTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTGGTCAGAAATGACCCTTCCTGTTGGAACACATTCTTTCCAACCCCATGTATAGACATCCCCTTCATCTGGTCCAGTATGACATTTACGAAATTACTAGTAACACAAAAATTATGAGCTCTTGCTGTCCTAAAGTACGCTATGTGTGTTCAACTAGTAGTATACCAGTTATTGCAACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTCACTAGGAAGTGGAAAAGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACATAGCTTTGGCCCATATCATCAGCAGAACCCCAAGTGAGGAGTTTACCAGACTCTGAGATGGCCATGGCGAAGCCGCAGCCGCCTCCGCATACGTCCCTCCACCCATCGCCGCCCGCCGCGGCCGGTAGCCTCACGGGTACGGGCCCGAGCAGCGGGGAGCGCTGCGGCGAGACGCCGGGGAGGTACCCCCACATAAGCACCACCCGCTCCTTCCTCCCCGCAGAAACCCGCGCGCGAAGCCCGGCGCCGTCCTCGTCCAT] consensusID : consensus_14188#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 643 fasta sequence [CGTTGACCCTTTCAAGGGAAAGAATGAATANACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCCCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAAAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATACACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGCTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGGTCCTGAATCTGTTAC] [+] EMBL CB673880 [CGTTGACCCTTTCAAGGGAAAGAATGAATANACCATATCTGCATGCACTGCCATGTATATACACGAAATGCAACACGGCCCCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGTCAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAGTAGGGGACTCCGCGAGCACCAAGGTGTGCCACCAACCGCACGACACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAAGGCACGTTTCTGTCCATGGAATCGCCGAGACCGAGCTGTCCGTACTTGTTCCATCCCCAGCAGAAGACCTCGCCTTCATCAGTTATTATTGCACTATGACGAGCTCCACAAGAAACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTCAGCTTGATCAAAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAATACACATCGCCATCTACAGATGTGCATACAGTGTGCCACAGCCCTGCACCAATGTCTTGCATCTTGACTCCCAGGATAGACGATACACACGCTTGGACTTAAAACATCATCTGTGTTTCCTTGTCCACACTGTCCGTACAGTCCCCATCCAAATGTAAGTAGTGGTCCTGAATCTGTTAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14188#1 TTTTTTTGAGGGAAAATTAACACGAANACCGTCAAATTCTGAAGGATTTCAGAGGCGGGA 60 consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 ------------------------------------------------------------ consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 GCAGAAATGTATAGCTCATCAGCCCCATACATGATCGTCCCTGTTCTAGCGTAATCAGCG 120 consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 ------------------------------------------------------------ consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 TTCCGGTTAATTTCGTCTGCATATAGCAACCG-GTTAATTTCGTCTGCATATAGCAAC-T 178 consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 ------------------------------------------------------------ consensus_14188#2 --------------------TTTTAACTCCTGTATTAAATGTCACTACACAAGGGGGTGC 40 consensus_14188#1 GGAAAATGCAAGACGAAGCATGGACACAGTCATCACCGCATGCACTTTCAAGCACAGGCC 238 consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 ---CCTTTTAGGTTTTTTTTTTGACACAGTCATCACCGCATGCCCTTTCAAGCACAGGCC 57 consensus_14188#2 TGAAAGGTTTTCATCACTGGACGTTGAACTTCGGGGTGCATGTTTGGTTGAAGACAACCT 100 consensus_14188#1 TTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTG--TACGTTGCC 296 consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TTACAGCCATTCCTACCCAACTGTATACGCGGTGCGATACAAGCTTGTG--TACGTTGCC 115 consensus_14188#2 TCGTCTCTTCGTGCTATCATCAGTACCTCTACTTTCAGAAGGACCAGATGCTGCTCCGCT 160 consensus_14188#1 CGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATAT 356 consensus_14188#3 CGTTGACCCTTTCAAGGGAAAGAATGAATANACCATATCTGCATGCACTGCCATGTATAT 60 consensus_14188#0 CGTTGAAGAGCGCACCGGAAAGAATGAATACACCATATCTGCATGCACTGCCATGTATAT 175 consensus_14188#2 ACTTGTCCTAGACACCTGCGACCTGGGGCTCACTGTAATGGAGTTGCCTTTGTTATATCT 220 *** ** * * * ** ** * * ** * *** * consensus_14188#1 ACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGT 416 consensus_14188#3 ACACGAAATGCAACACGGCCCCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGT 120 consensus_14188#0 ACACGAAATGCAACACGGCCGCACCTTGATGAAAGCCTACCAAACTCCTAACAAAATTGT 235 consensus_14188#2 TGGTCAGCGGCAATCGCACTCTGTCTT--TCATCTTTTTCCAAAGTTCCACCAGAAG-AT 277 * **** * *** * * * ***** * * * ** ** * consensus_14188#1 CAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAG-TAGGGGACTCCGCGAGCACCAAGG 475 consensus_14188#3 CAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAG-TAGGGGACTCCGCGAGCACCAAGG 179 consensus_14188#0 CAACTAGGGAAGTTTGTTCGCCGTCAGGTTTTAAG-TAGGGGACTCCGCGAGCACCAAGG 294 consensus_14188#2 TGGTCAGAAATGACCCTTC-CTGTTGGAACACATTCTTTCCAACCCCATGTATAGACATC 336 ** * * *** * ** * * * ** ** * * * consensus_14188#1 TGTGCCACCAACCGCACGAC-ACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAA 534 consensus_14188#3 TGTGCCACCAACCGCACGAC-ACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAA 238 consensus_14188#0 TGTGCCACCAACCGCACGAC-ACATTCAGTGGGTGGTATGCGTCGACAGGAACACTGCAA 353 consensus_14188#2 CCCTTCATCTGGTCCAGTATGACATTTACGAAAT--TACTAGT-AACACAAAAATTATGA 393 ** * ** * ***** * * ** ** *** ** * * * consensus_14188#1 GGCACGTTTCTGTCCATGGAATCGCCGAGACCG---AGCTGTCCGTACTTGTTCCATCCC 591 consensus_14188#3 GGCACGTTTCTGTCCATGGAATCGCCGAGACCG---AGCTGTCCGTACTTGTTCCATCCC 295 consensus_14188#0 GGCACGTTTCTGTCCATGGAATCGCCGAGACCG---AGCTGTCCGTACTTGTTCCATCCC 410 consensus_14188#2 GCT--CTTGCTGTCCTAAAGTACGCTATGTGTGTTCAACTAGTAGTATACCAGTTATTGC 451 * ** ****** *** * * * ** *** ** * consensus_14188#1 CA-GCAGAAGACCTCGCCTTCATCAGTT---ATTATTGCACTATGACGAGCTCCACAAGA 647 consensus_14188#3 CA-GCAGAAGACCTCGCCTTCATCAGTT---ATTATTGCACTATGACGAGCTCCACAAGA 351 consensus_14188#0 CA-GCAGAAGACCTCGCCTTCATCAGTT---ATTATTGCACTATGACGAGCTCCACAAGA 466 consensus_14188#2 AACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTCACTAGGAAGTGGAAA 511 * ** ** ** ****** * * ****** * ** ** * * consensus_14188#1 AACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCTG 707 consensus_14188#3 AACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCT- 410 consensus_14188#0 AACAGCTCGTGCATTCTTATTCTCCAAGCTTGAGGCATCTACCAGTTTTGGTACAGTCT- 525 consensus_14188#2 AGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACAT-----AGCTTTGGCCCATATCA 566 * * ** * * * ** ** ** * * * *** ** ***** ** consensus_14188#1 TCCGTACAGTCCCCATCCAAATGTAAGTAGTGCTCCTGAATCTG--TTACTACAGCACTG 765 consensus_14188#3 ------CAG-CTTGATCAAAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAA 463 consensus_14188#0 ------CAG-CTTGATCAGAACCAGTGCCCAGCTGCCCAAACTGGTTTCCTCCGAAGGAA 578 consensus_14188#2 TCAGCAGAACCCCAAGTGAGGAGTTTACCAGACT-CTGAGATGG--CCATGGCGAAGCCG 623 * * * ** * * * * consensus_14188#1 TGGCGACCCCCACATGCAATGGCCTTCACGCAATTTCCCATGACTTTGCTAATCTGCGCT 825 consensus_14188#3 TACACATCGCCATCTACA--GATGTGCATACAGTGTGCCACAGCCCTGC--ACCAATGTC 519 consensus_14188#0 TAGACATCGCCATCTACA--GATGTGCATACAGTGTGCCACAGCCCTGC--ACCAATGTC 634 consensus_14188#2 CAGCCGCCTCCGCATACG--TCCCTCCACCCATCGCCGCCCGCCGCGGC----CGGTAGC 677 * ** * * * ** ** * * ** * consensus_14188#1 TCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCCGATCTTTGCTGTACAATGCTGATTCA 885 consensus_14188#3 TT-GCA-TCTTGACTCCCAGGATAGACGATACACACGCTTGGACTTAAAACATCATCTGT 577 consensus_14188#0 TT-GCA-TCTTGACTCCCAGGATAGACGATACACACG-TTGGACTTAAAACATCATCTGT 691 consensus_14188#2 CTCACGGGTACGGGCCCGAGCA---GCGGGGAGCGCT----GCGGCGAGACGCCGGGGAG 730 * * ** * * * * * consensus_14188#1 ATGCACGGGATAGGATGTGGAGAGGAAACAGTCCGGATTCTAGAACCCAGGCCTAGTTGC 945 consensus_14188#3 GTTTCC----TTGTCCACACTGTCCGTACAGTCCCCATCC--AAATGTAAG--TAGTGGT 629 consensus_14188#0 GTTTCC----TTGTCCACACTGTCCGTACAGTCCCCATCC--AAATGTAAG--TAGTGCT 743 consensus_14188#2 GTACCCCC--ACATAAGCACCACCCGCTCCTTCCTCCCCGCAGAAACCCGCGCGCGAAGC 788 * * * *** ** * consensus_14188#1 CCTTCTCCTCCATAGCCCCAACCCCATACTTGGCCTAAATCTGAAGCTGATAGTGCTAAT 1005 consensus_14188#3 CCTGAATCT--GTTAC-------------------------------------------- 643 consensus_14188#0 CCTGAATCT--GTTACTACAGCACTGTGGCGACCCCCACATGCAATGGCCTTCACGCAAT 801 consensus_14188#2 CCGGCGCCGTCCTCGTCCAT---------------------------------------- 808 ** * * consensus_14188#1 GTATGACGACCACCAGCAGCTAC-TGCCATTAT--------------------------- 1037 consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TTCCCATGACTTTGCTAATCTGCACTTCAGCACTTTTGTTTCCTTTCATAGCTGCTGGCC 861 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 GATCTTTGCTGTACAATGCTGATTCAATGCACGGGATAGGATGTGGAGAGGAAACAGTCC 921 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 GGATTCTAGAACCCAGGCCTAGTTGCCTTCTCCTCCATAGCCCAAACCCCATACTTGGCC 981 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TAAATCTGATAGTGCTAATGTATGACGACCACCAGCAGCTACTGCCATTATTTTAACTCC 1041 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TGTATTAAATGTCACTACACAAGGGGGTGCTGAAAGGTTTTCATCACTGGACGTTGAACT 1101 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TTCGGGTGCATGTTTGGTTGAAGACAACNTCGTCTCTTCGTGCTATCATCAGTACCTCTA 1161 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TTTCAGAAGGACCAGATGCTGTCCGCTACTTGTCCTAGACACCTGCGACCTGGGGCTCAC 1221 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TTGGTCAGCGGCAATCGCACTCTGTCTTTCATCTTTTTCCAAAGTTCCACCAGAAGATTG 1281 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 GTCAGAAATGACCCTTCCTGTTGGAACACATTCTTTCCAACCCCATGTATAGACATCCCC 1341 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TTCATCAGTTATTGCAACACAATGAGCCCATCCAGCATCAGCTCTCACTATTGCCACGTC 1401 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 ACTAGGAAGTGGAAAAGCTTCTGGAGTTTCCTCATGCTTCCCGGCAGTCACATAGCTTTG 1461 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 GCCCATATCATCAGCAGAACCCCAAGTGAGGAGTTTACCAGACTCTGAGATGGCCATGGC 1521 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 GAAGCCGCAGCCGCCTCCGCATACGTCCCTCCACCCATCGCCGCCCGCCGCGGCCGGTAG 1581 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 CCTCACGGGTACGGGCCCGAGCAGCGGGGAGCGCTGCGGCGAGACGCCGGGGAGGTACCC 1641 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 CCACATAAGCACCACCCGCTCCTTCCTCCCCGCAGAAACCCGCGCGCGAAGCCCGGCGCC 1701 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 GTCCTCCTCCATCTCCATCTGCTCCTCGCCTCCCGCTCCCACCACCCCCACGCCTCCGCC 1761 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------------------------------------------------ consensus_14188#3 ------------------------------------------------------------ consensus_14188#0 TNCCGCGCCGCCGCGGCCGTTCATCTCCTCGGNAGCACCCGTCCTCCCCGTATCCGCCGC 1821 consensus_14188#2 ------------------------------------------------------------ consensus_14188#1 ------------------- consensus_14188#3 ------------------- consensus_14188#0 CGATTCCTCCGCTACCTTC 1840 consensus_14188#2 ------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||