These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14190#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 12 consensus length = 1532 fasta sequence [AGGAGCTATAAAAAGAAGCAGGAAGCCACTCGCTCTCCTCACAGCCACAGCTCGCCATCGTCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC-GGCACCGGC-ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA-TC-GTC-TAT-AACCGCGCCCACGCATGGCACGA-CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC-GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAATTCCATCT-CC-AATGTGAATTTTACTAGTTACTATTTTTA-----AAAAAAAAAATCCCCTCTTATGTTATGTGTGATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTGTTAGTGCTATACTGATATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAATGCCACGGTGTATGAAAAAACTTACGAATTGTGCAAAAA] [+] EMBL AK102174 [AGGAGCTATAAAAAGAAGCAGGAAGCCACTCGCTCTCCTCACAGCCACAGCTCGCCATCGTCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGTTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCACCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTG ] [+] EMBL CA756499 [ GTCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGAAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGGCTGTGCGCCATCTGCGGTGCCGGCGTGGTGGAGGGGTTCCAGGGGCGGTTGTACATGGGCTCCGGGGGCGGCGCCAACGCCGTGAACCC GGGTACCCCAg ] [+] EMBL BE607372 [ AGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGG ] [+] EMBL CB618084 [ GTGGCCACTTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACG ] [-] EMBL CB618085 [ GCTGTCGCTGACGCGGGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAAGGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGGGTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACACCGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCACCC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAAT ] [+] EMBL CK085184 [ CCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGCGCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACC GGCACCGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCACCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAG ] [+] EMBL BI796654 [ ACCATCCCCATCACCGGGCACCGGC ATCAACCCCGCCCGCAG CTCGGC CC CCA TCTGTC TAT AACCGCGCCCACGCAT GCACGA CCACTGGATTTTCT GGTT GTCC TTCATCGGAGC GCACTGGC GCCATCTACCACGT GTGGTGATCAGA CAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATC ATTCCATCT CC AATGTGAATTTTACTAGTTACTATTTTTACCTCCAAAAAAAAAA ] [+] EMBL CB000076 [ CC GGCACCGGC ATCAACCCCGCCCGCAGCCTCCCCTTCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCACCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACCTGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGTTTGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTCGGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTG ] [+] EMBL BM038795 [ GCACCGGCGATCAACCCCGCCCGCAGCCTCGGCGCCGCCAGTC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATC ACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATC ATTCCATCT CC AATGTGAATTTTACTAaaaaaaa ] [+] EMBL BI796201 [ CGGC ATCAACCCCGCCCGCAGCCTCGGCGCCGCCA TC GTC TAT AACCGCGCCCACGCATGGCACGA CCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACT GCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAATTCCATCTCCC AATGTGAATTTTACTAGTTACTATTTTTA AAAAAAAAA ] [+] EMBL BI809246 [ CCA TC GTCTTATAAACCGCGCCCACGCATGGCACGACCCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCATCTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCATGCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCAACC GAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCAaaaa ] [-] EMBL CF295406 [ AGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACGCCTTCAGCTATATATAGCTTTGCATCAATTCCATCT CCAAATGTGAATTTTACTAGTTACTATTTTTA CCTCCTCTCATCCCCTCTTATGTTATGTGTGATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTGTTAGTGCTATACTGATATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAATGCCACGGTGTATGAAAAAACTTACGAATTGTGCAAAAA] consensusID : consensus_14190#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 910 fasta sequence [TCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGGAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTAGCGCTCGTCTACTGCACCGTCGGCATCTCCGGCGGGCACATGAACCCGGTGGTGACGTTCGGGCTGTTCCTGCCGCGGAAGCTGAGACTGACCTCTGGCGGTGACTACATAGCAAAGCCATGCCTGGGCTCTCTCACCGTGCCCCCCTCAACTTGCCTGCTACTCCTCTCTGTTCACCTTTTATTTGCCTCCTCTCATGATTGTACCTCCCTCGTCTTTCTTTTTGACTTTTATCCCCTCCCAACTCTAACTCGTTCCCTCCCTCATTTTTATTAATTCCGCTGTCGACATTTGTTTCACACGGTCTTTTATCCTTTTACCTTTTTTGTATGTTCGTGTTCTCGCCCCACTGTACCTATTCCCTCTCACCTCCTTCTCTTCTCTCTTGTTCTCGGCTTGTAGGTTCTGATGGTCGTTCGTTGTGGTATGCTGCCGGTTATGCGCTCGCAGTTGTGGTGTGTCATTTTATTTCTTACAATACACAATATTTTTATTTCTTTTTATTAGTCTTCTTAGGAGACCGCTGTT] [+] EMBL BE039992 [TCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGGAAGAAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTAGCGCTCGTCTACTGCACCGTCGGCATCTCCGGCGGGCACATGAACCCGGTGGTGACGTTCGGGCTGTTCCTGCCGCGGAAGCTGAGACTGACCTCTGGCGGTGACTACATAGCAAAGCCATGCCTGGGCTCTCTCACCGTGCCCCCCTCAACTTGCCTGCTACTCCTCTCTGTTCACCTTTTATTTGCCTCCTCTCATGATTGTACCTCCCTCGTCTTTCTTTTTGACTTTTATCCCCTCCCAACTCTAACTCGTTCCCTCCCTCATTTTTATTAATTCCGCTGTCGACATTTGTTTCACACGGTCTTTTATCCTTTTACCTTTTTTGTATGTTCGTGTTCTCGCCCCACTGTACCTATTCCCTCTCACCTCCTTCTCTTCTCTCTTGTTCTCGGCTTGTAGGTTCTGATGGTCGTTCGTTGTGGTATGCTGCCGGTTATGCGCTCGCAGTTGTGGTGTGTCATTTTATTTCTTACAATACACAATATTTTTATTTCTTTTTATTAGTCTTCTTAGGAGACCGCTGTT] consensusID : consensus_14190#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 817 fasta sequence [GGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCGCGGAAGCTGTCTTTGTCGCGGTCGGTGATCTACATGGCGATGCATTCTTCTGGGTTTTTAATGCTGTTCCTGTTAGCTGAAAGGGGATTAATTGTTCGTCTTTCTATTTTTCTCTCTCTTTCTCTCTTTTCTTTATTATGCTTTCTTTCTCTTCTGCTCTCTTTCGTCCCTTACTTTTTGTTTTTATTTCAATTCTCGTGTTGTTCTTTTCTTTTCTCCCCGACCACCTGCTTTAATTTTTAATTTTATTTCGCTTCATCTTGACGCCCCACTTTTAGTATTATCTCTCTTTTTTCCATTTGTTCTTAACTTTCTCTACTCTTATCCCTCCTATGTTTTTTTTTTTCTCTCTCCTTTTTCTCTACCGAGTCTCTCTGTACATCACATCATTATTTTTTTCACTTTTTTTTTATTCTCTTTATTTTTTATTATTTTCTTTTTTTATTATTTTTTGTTTCAATTTTCTATCTTTTTATTTAATCATCTTTATAATGTTTTCTTTA] [+] EMBL BE040992 [GGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGCGGAGGAGCTGACGTCGTGGTCGTTCTACCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGACGGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGGGCACATCAACCCGGCGGTGACGTTCGGGCTGTTTCTGGCGCGGAAGCTGTCTTTGTCGCGGTCGGTGATCTACATGGCGATGCATTCTTCTGGGTTTTTAATGCTGTTCCTGTTAGCTGAAAGGGGATTAATTGTTCGTCTTTCTATTTTTCTCTCTCTTTCTCTCTTTTCTTTATTATGCTTTCTTTCTCTTCTGCTCTCTTTCGTCCCTTACTTTTTGTTTTTATTTCAATTCTCGTGTTGTTCTTTTCTTTTCTCCCCGACCACCTGCTTTAATTTTTAATTTTATTTCGCTTCATCTTGACGCCCCACTTTTAGTATTATCTCTCTTTTTTCCATTTGTTCTTAACTTTCTCTACTCTTATCCCTCCTATGTTTTTTTTTTTCTCTCTCCTTTTTCTCTACCGAGTCTCTCTGTACATCACATCATTATTTTTTTCACTTTTTTTTTATTCTCTTTATTTTTTATTATTTTCTTTTTTTATTATTTTTTGTTTCAATTTTCTATCTTTTTATTTAATCATCTTTATAATGTTTTCTTTA] consensusID : consensus_14190#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 299 fasta sequence [GCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCCACCGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACCCCTTCAGCTAATATATATAGCTTTGCACCTCCAAAAAAAAAA] [+] EMBL BI797578 [GCATCATCATCTTAATTAAGCGATAATTACTCTGAAATAATCCACCGAGTTGATGCTGCAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCGATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATTATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCATGCATGTTCTTGGTTGCACCCCTTCAGCTAATATATATAGCTTTGCACCTCCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14190#0 AGGAGCTATAAAAAGAAGCAGGAAGCCACTCGCTCTCCTCACAGCCACAGCTCGCCATCG 60 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 TCGTCGTCGTCGTCGTCGTCTCCGGCTCCGGCAAGAGAGCTAGTAGTGAGTAGTAGAAAG 120 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 AAGAAGAGGCAAATTAATAGTAATGGAGGGGAAGGAGGAGGATGTGAGGCTGGGGGCGAA 180 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 CAGGTACACGGAGAGGCAGCCGATCGGGACGGCGGCGCAGGGGGCGGAGGAGAAGGACTA 240 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 CCGGGAGCCGCCGGCGGCGCCGGTGTTCGAGGTGGAGGAGCTGACGTCGTGGTCGTTCTA 300 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 CCGGGCGGGGATCGCGGAGTTCGTGGCGACGTTCCTGTTCCTGTACATCAGCATCCTGAC 360 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GGTGATGGGGGTGAACAAGTCGGCGTCCAAGTGCGCCACCGTGGGGATCCAGGGCATCGC 420 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GTGGTCGTTCGGCGGCATGATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGG 480 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GCACATCAACCCGGCGGTGACGTTCGGGCTGTTCCTGGCGCGGAAGCTGTCGCTGACGCG 540 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GGCGGTGTTCTACATGGCGATGCAGTGCCTGGGCGCCATCTGCGGCGCCGGCGTGGTGAA 600 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GGGGTTCCAGCGGGGGCTGTACATGGGCTCCGGCGGCGGCGCCAACGCCGTGAACCCGGG 660 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GTACACCAAGGGGGACGGGCTCGGGGCGGAGATCGTGGGCACCTTCGTCCTCGTCTACAC 720 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 CGTCTTCTCCGCCACCGACGCCAAGCGCAACGCCAGGGACTCCCACGTCCCCATCCTGGC 780 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 GCCGCTCCCCATCGGCTTCGCCGTCTTCCTCGTCCACCTCGCCACCATCCCCATCACCGG 840 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ------------------------------------------------------------ consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 CACCGGCATCAACCCCGCCCGCAGCCTCGGCGCCGCCATCGTCTATAACCGCGCCCACGC 900 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 -----------------------------------TCGTCGTCGTCGTCGTCTCCGGCTC 25 consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 ATGGCACGACCACTGGATTTTCTGGGTTGGTCCGTTCATCGGAGCGGCACTGGCGGCCAT 960 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 CGGCAAGAGAGCTAGTAGTGAGTAGTAGGAAGAAGAAGAGGCAAATTAATAGTAATGGAG 85 consensus_14190#2 ------------------------------------------------------------ consensus_14190#0 CTACCACGTGGTGGTGATCAGAGCAATCCCCTTCAAGAGCCGGGACTAATTAATTACCAT 1020 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 GGGAAGGAGGAGGATGTGAGGCTGGGGGCGAACAGGTACACGGAGAGGCAGCCGATCGGG 145 consensus_14190#2 ----------------------------------------------------------GG 2 consensus_14190#0 GCATCATCATCTTAATTAAGCGATAATTACT--CTGAAATAATCAACCGAGTTGATGCTG 1078 consensus_14190#3 GCATCATCATCTTAATTAAGCGATAATTACT--CTGAAATAATCCACCGAGTTGATGCTG 58 consensus_14190#1 ACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTT- 204 consensus_14190#2 ACGGCGGCGCAGGGGGCGGAGGAGAAGGACTACCGGGAGCCGCCGGCGGCGCCGGTGTT- 61 * * * ** ** *** * * * * * * * * ** * consensus_14190#0 CAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCG 1138 consensus_14190#3 CAAGATGATGGAGGATCAAGTCTCTACAGTACTACGTGTGTTATTACCGTCTGGTGATCG 118 consensus_14190#1 CGAGGCGGAGGAGC-TGACGTCGTGGTCGTTCTAC-CGGGCGGGGATCGCGGAGTTCGTG 262 consensus_14190#2 CGAGGCGGAGGAGC-TGACGTCGTGGTCGTTCTAC-CGGGCGGGGATCGCGGAGTTCGTG 119 * ** * **** * * *** ** **** * * * ** ** * consensus_14190#0 ATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATT 1198 consensus_14190#3 ATGAAGCTAGCCGCTGCATAATTATAAGCGCGTTTATATATATCTGATGTTGCTGTAATT 178 consensus_14190#1 GCGACGTT--CCTGTTCCTGTACATCAGCATCCTGACG-GTGATGGGGGTGAACAAGTCG 319 consensus_14190#2 GCGACGTT--CCTGTTCCTGTACATCAGCATCCTGACG-GTGATGGGGGTGAACAAGTCG 176 ** * * ** * * * ** *** * * * * ** consensus_14190#0 ATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCAT 1258 consensus_14190#3 ATATCTATGTGTACGTAGTATGTTTGGTGTGAGAAATGGTACTTGTGTGTGCGGAGGCAT 238 consensus_14190#1 GCGTCCAAGTGCGC----CACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCAT 375 consensus_14190#2 GCGTCCAAGTGCGC----CACCGTGGGGATCCAGGGCATCGCGTGGTCGTTCGGCGGCAT 232 ** * *** * * * ** * * ** ** *** ***** consensus_14190#0 GCATGTTCTTGGTTGCACGCCTT-CAGCTA---TATATAGCTTTGCATCAATTCCATCTC 1314 consensus_14190#3 GCATGTTCTTGGTTGCACCCCTT-CAGCTAATATATATAGCTTTGCACC---TCCAAAAA 294 consensus_14190#1 G-ATCTTAGCGCTCGTCTACTGCACCGTCGGCATCTCCGGCGG-GCACATGAACCCGGTG 433 consensus_14190#2 G-ATCTTCGCGCTCGTCTACTGCACCGCCGGCATCTCCGGCGG-GCACATCAACCCGGCG 290 * ** ** * * * * * * * * ** *** ** consensus_14190#0 CAATGTGAATTTTACTAGTTACTATTTTTAAAAAAAAAAATCCCCTCTTATGTTATGTGT 1374 consensus_14190#3 AAAAA------------------------------------------------------- 299 consensus_14190#1 GTGACGTTCGGGCTGTTCCTGCCGCGGAAGCTGAGACTGACCTCTGGCGGTGA-CTACAT 492 consensus_14190#2 GTGACGTTCGGGCTGTTTCTGGCGCGGAAGCTGTCTTTG-TCGCGGTCGGTGATCTACAT 349 consensus_14190#0 GATCAAGTATTTGATCCCCTCTCGTTAAGTAAATGTTAAGCATGCGTATTTGTAAACTTG 1434 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 AGCAAAGCCATGCCTGGGCTCTCTCACCGTGCCCCCCTCAACT----------TGCCTGC 542 consensus_14190#2 GGCGATGCATTCTTCTGGGTTTTTAATGCTGTTCCTGTTAGCTGAAAGGGGATTAATTGT 409 consensus_14190#0 TTAGTGCTATACTGATATGCTATCGGCCCTATCGGCGCCATTATTGCCGGGTCTTCAAAT 1494 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 TACTCCTCTCTGTTCACCTTTTATTTGCCTCCTCTCATGATTGTACCTCCCTCGTCTT-- 600 consensus_14190#2 TCGTCTTTCTATTTTTCTCTCTCTTTCTCTCTTTTCTTTATTATGCTTTCTTTCTCTTCT 469 consensus_14190#0 GCCACGGTGTATGAAAAAACTTACGAATTGTGCAAAAA---------------------- 1532 consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 ----TCTTT------TTGACTTTTATCCCC-TCCCAACTCTAAC-TCGTTCCCTCCCTCA 648 consensus_14190#2 GCTCTCTTTCGTCCCTTACTTTTTGTTTTTATTTCAATTCTCGTGTTGTTCTTTTCTTTT 529 consensus_14190#0 ------------------------------------------------------------ consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 TTTTT-----ATTAATTCCGCTGTCGACATTTGTTTCACACGGTCTT----------TTA 693 consensus_14190#2 CTCCCCGACCACCTGCTTTAATTTTTAATTTTATTTCGCTTCATCTTGACGCCCCACTTT 589 consensus_14190#0 ------------------------------------------------------------ consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 TCCTTTTACCTTTTTTGTATGTTCGTGTTCTCGCCCCACTGTACC--TATTCCCTCTCAC 751 consensus_14190#2 TAGTATTATCTCTCTTTTTTCCATTTGTTCTTAACTTTCTCTACTCTTATCCCTCCTATG 649 consensus_14190#0 ------------------------------------------------------------ consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 CTCCTTCTCTTCTCTCTTGTTCTCGGCTTGTAGGTTCTGATGGTCGTT-CGTTGTGGTAT 810 consensus_14190#2 TTTTTTTTTTTCTCTCTCCTTTTTCTCTACCGAGTCTCTCTGTACATCACATCATTATTT 709 consensus_14190#0 ------------------------------------------------------------ consensus_14190#3 ------------------------------------------------------------ consensus_14190#1 GCTGC-CGGTTATGCGCTCGCAGTTGTGGTGTGTCATTTTATTTCTT----ACAATACAC 865 consensus_14190#2 TTTTCACTTTTTTTTTATTCTCTTTATTTTTTATTATTTTCTTTTTTTATTATTTTTTGT 769 consensus_14190#0 ------------------------------------------------ consensus_14190#3 ------------------------------------------------ consensus_14190#1 AATATTTTTATTTCTTTTTATT-AGTCTTCTTAGGAGACCGCTGTT-- 910 consensus_14190#2 TTCAATTTTCTATCTTTTTATTTAATCATCTTTATAATGTTTTCTTTA 817 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||