cluster # 142

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Oryza sativa
cluster # 142 cluster # 142 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_142#0 length = 753 sequences # 1

consensus_142#1 length = 691 sequences # 1

consensusID : consensus_142#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 753
fasta sequence

                              [ATAGTACATTTTAGTTATACAAGTAAACATTCCATAGACTAATGTTTTGCTATTACTTGATTTGTTCAATAGCATATCAATCCAACCTGTTGCCTGTAATCTCATTTTTTATGTGTTCATGCTATGAATCATGTGCAGCCAGGAGAAGCATGCAGCCTAATCGATCATCAGGTCAGCAGGCTTTGCAGATTCCTGCATCCGTTTCAGCCCCGGCATCAGCAGTCATGTGTCAACCATCGCAACAGGATGCGCAGTCATCCATGGGCAGTTCACCGCGACACCCTTTTGTGACAATAAATCACCATAGCATGGACTATTTGGGCAGATCTGCTACTCCCTTGGCTCACAGTCGAGGTGCTGGCATGGGCTCTGGGATTGCGTACCATGCACCAGAATCCCATCTCCATTCTGTTGTAAGTCCATTGCCAGCATCAGGTCTCCAACTTGGGATCGCGAGCTTGGAACAATAGCTGGGGCTTTTGATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCCGTAAGGNTACATACAGTGTAACCGTATGTGTTTCTATGATGACTTTAACTTCTGAGGTTTTGCTTAGTGAGAAATAGATCCTACTTAGAATCCGATCAGGCCGTATACCTTCTCTAGCTGGGGAGATTAATCTGGTAGTTTATGTTTCGCTTTTCTGCATNCTTCAAGTTCAGTAGCAACAGTTTGACTGAAACTGGANCTGTCACAAGGTGGCNAAAATGTGGNACACCCCAAAATC]

[+] EMBL CA766836             [ATAGTACATTTTAGTTATACAAGTAAACATTCCATAGACTAATGTTTTGCTATTACTTGATTTGTTCAATAGCATATCAATCCAACCTGTTGCCTGTAATCTCATTTTTTATGTGTTCATGCTATGAATCATGTGCAGCCAGGAGAAGCATGCAGCCTAATCGATCATCAGGTCAGCAGGCTTTGCAGATTCCTGCATCCGTTTCAGCCCCGGCATCAGCAGTCATGTGTCAACCATCGCAACAGGATGCGCAGTCATCCATGGGCAGTTCACCGCGACACCCTTTTGTGACAATAAATCACCATAGCATGGACTATTTGGGCAGATCTGCTACTCCCTTGGCTCACAGTCGAGGTGCTGGCATGGGCTCTGGGATTGCGTACCATGCACCAGAATCCCATCTCCATTCTGTTGTAAGTCCATTGCCAGCATCAGGTCTCCAACTTGGGATCGCGAGCTTGGAACAATAGCTGGGGCTTTTGATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCCGTAAGGNTACATACAGTGTAACCGTATGTGTTTCTATGATGACTTTAACTTCTGAGGTTTTGCTTAGTGAGAAATAGATCCTACTTAGAATCCGATCAGGCCGTATACCTTCTCTAGCTGGGGAGATTAATCTGGTAGTTTATGTTTCGCTTTTCTGCATNCTTCAAGTTCAGTAGCAACAGTTTGACTGAAACTGGANCTGTCACAAGGTGGCNAAAATGTGGNACACCCCAAAATC]




>consensus_142#0
ATAGTACATTTTAGTTATACAAGTAAACATTCCATAGACTAATGTTTTGCTATTACTTGA
TTTGTTCAATAGCATATCAATCCAACCTGTTGCCTGTAATCTCATTTTTTATGTGTTCAT
GCTATGAATCATGTGCAGCCAGGAGAAGCATGCAGCCTAATCGATCATCAGGTCAGCAGG
CTTTGCAGATTCCTGCATCCGTTTCAGCCCCGGCATCAGCAGTCATGTGTCAACCATCGC
AACAGGATGCGCAGTCATCCATGGGCAGTTCACCGCGACACCCTTTTGTGACAATAAATC
ACCATAGCATGGACTATTTGGGCAGATCTGCTACTCCCTTGGCTCACAGTCGAGGTGCTG
GCATGGGCTCTGGGATTGCGTACCATGCACCAGAATCCCATCTCCATTCTGTTGTAAGTC
CATTGCCAGCATCAGGTCTCCAACTTGGGATCGCGAGCTTGGAACAATAGCTGGGGCTTT
TGATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCCGTAAGGNTACATACAGTGTAACCGT
ATGTGTTTCTATGATGACTTTAACTTCTGAGGTTTTGCTTAGTGAGAAATAGATCCTACT
TAGAATCCGATCAGGCCGTATACCTTCTCTAGCTGGGGAGATTAATCTGGTAGTTTATGT
TTCGCTTTTCTGCATNCTTCAAGTTCAGTAGCAACAGTTTGACTGAAACTGGANCTGTCA
CAAGGTGGCNAAAATGTGGNACACCCCAAAATC

consensusID : consensus_142#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 691
fasta sequence

                              [ATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCGTAAGGTTACATACAGTGTACCCGTATGTGTTTCTATGATGACTTTACCTTTTGAGTTTTGCTTAGTGAGAAATAGATCCTACTTAGAATCCGATCAGGCCGTATACTTCTCTAGCTGGGAGATTAATCTGTTAGTTTATGTTTCGCTTTCTGCATCCTTCAAGTTCAGTAGCAACAGTTTGACTGAGACTGGAGCTGTCACAGGTGGCAGACATGTGGTACACCCAAAATCCTGAAACCAGCCTGCATTTGAAGTGCTTGGCCGTCCTTTTCTCGTCTTTGGTCCTGAGCCTGCGTTATTTCTCCCTACGTTGGTCCTGCACAGAATGCATTTACAGTCATGGATCCCATGTCAATTTCTCATGGACCATGCGCATTGGAGTACTCCTCTCGTAGTCTCATCAGAATGGTCCTGCTCAGTGTCATGGGGAAGGATAACCGAAGTGATGGTTGAATGTCTTCACTCGTGCAAATACCTATGAGGCCAAGCATCGGTGGTGTCTGGTCATCTGGTGTGGTACTGTGGTGTGAATTGTTTGCACTGCATCTCAATTTTGAATTGTGATACGGTAGTCGCGTACCCATTGGGATGGTTGTAGTTGTACTCATCATGGTAATATGGGAGGATTGGTGGTCCAAAAAAAAAAAAAAAAAAAAAA]

[-] EMBL CA760990             [ATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCGTAAGGTTACATACAGTGTACCCGTATGTGTTTCTATGATGACTTTACCTTTTGAGTTTTGCTTAGTGAGAAATAGATCCTACTTAGAATCCGATCAGGCCGTATACTTCTCTAGCTGGGAGATTAATCTGTTAGTTTATGTTTCGCTTTCTGCATCCTTCAAGTTCAGTAGCAACAGTTTGACTGAGACTGGAGCTGTCACAGGTGGCAGACATGTGGTACACCCAAAATCCTGAAACCAGCCTGCATTTGAAGTGCTTGGCCGTCCTTTTCTCGTCTTTGGTCCTGAGCCTGCGTTATTTCTCCCTACGTTGGTCCTGCACAGAATGCATTTACAGTCATGGATCCCATGTCAATTTCTCATGGACCATGCGCATTGGAGTACTCCTCTCGTAGTCTCATCAGAATGGTCCTGCTCAGTGTCATGGGGAAGGATAACCGAAGTGATGGTTGAATGTCTTCACTCGTGCAAATACCTATGAGGCCAAGCATCGGTGGTGTCTGGTCATCTGGTGTGGTACTGTGGTGTGAATTGTTTGCACTGCATCTCAATTTTGAATTGTGATACGGTAGTCGCGTACCCATTGGGATGGTTGTAGTTGTACTCATCATGGTAATATGGGAGGATTGGTGGTCCAAAAAAAAAAAAAAAAAAAAAA]




>consensus_142#1
ATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCGTAAGGTTACATACAGTGTACCCGTATG
TGTTTCTATGATGACTTTACCTTTTGAGTTTTGCTTAGTGAGAAATAGATCCTACTTAGA
ATCCGATCAGGCCGTATACTTCTCTAGCTGGGAGATTAATCTGTTAGTTTATGTTTCGCT
TTCTGCATCCTTCAAGTTCAGTAGCAACAGTTTGACTGAGACTGGAGCTGTCACAGGTGG
CAGACATGTGGTACACCCAAAATCCTGAAACCAGCCTGCATTTGAAGTGCTTGGCCGTCC
TTTTCTCGTCTTTGGTCCTGAGCCTGCGTTATTTCTCCCTACGTTGGTCCTGCACAGAAT
GCATTTACAGTCATGGATCCCATGTCAATTTCTCATGGACCATGCGCATTGGAGTACTCC
TCTCGTAGTCTCATCAGAATGGTCCTGCTCAGTGTCATGGGGAAGGATAACCGAAGTGAT
GGTTGAATGTCTTCACTCGTGCAAATACCTATGAGGCCAAGCATCGGTGGTGTCTGGTCA
TCTGGTGTGGTACTGTGGTGTGAATTGTTTGCACTGCATCTCAATTTTGAATTGTGATAC
GGTAGTCGCGTACCCATTGGGATGGTTGTAGTTGTACTCATCATGGTAATATGGGAGGAT
TGGTGGTCCAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_142#0      ATAGTACATTTTAGTTATACAAGTAAACATTCCATAGACTAATGTTTTGCTATTACTTGA 60
consensus_142#1      ATTCTTCTTCGAAGCT-TTTGGGCATGCAGCCCGTAAGGTTACATACAG-TGTACCCGTA 58
                     **  * * *   ** * *    * *  **  ** **   * *  *   * * *  *   *

consensus_142#0      TTTGTTCAATAGCATATCAATCCAACCTGTTGCCTGTAATCTCATTTTTTATGTGTTCAT 120
consensus_142#1      TGTGTTTC----TATGATGACTTTACCTTTTGAGTTTTGCTTAGTGAGAAATA-GATCCT 113
                     * ****       **    *    **** ***  * *    *  *     **  * ** *

consensus_142#0      GCTATGAATCATGTGCAGCCAGGAGAAGCATGCAGCCTAATCGATCATCAGGTCAGCAGG 180
consensus_142#1      ACTTAGAATC-CGATCAGGCCGTATACTTCTCTAGC-TGGGAGATTAATCTGTTAGTTTA 171
                      **  *****  *  *** * * * *    *  *** *    *** *    ** **    

consensus_142#0      CTTTGCAGATTCCTGCATCCGTTTCAGCCCCGGCATCAGCAGTCATGTGTCAACCATCGC 240
consensus_142#1      TGTTTC-GCTTTCTGCATCC--TTCAAGTTCAGTAGCAACAGTT---TGACTGAGACTGG 225
                       ** * * ** ********  ****    * * * ** ****    ** *    *  * 

consensus_142#0      AACAGGATGCGCAGTCATCCATGGGCAGTTCACCGCGACACCCTTTTGTGACAATAAATC 300
consensus_142#1      AGCTGTCACAGGTGGCAGACAT--GTGGTACACC-CAAAATCCT------GAAACCAGCC 276
                     * * *     *  * **  ***  *  ** **** * * * ***        **  *  *

consensus_142#0      ACCATAGCATGGACTATTTGGGCAGATCTGCTACTCCCTTGGCTCACAGTCGAGGTGCTG 360
consensus_142#1      TGCAT---TTGAAGTGCTTGGCCGTCCTTTTCTCGTCTTTGGTCCTGAGCCTGCGT---- 329
                       ***    ** * *  **** *     *    *  * ****  *  ** *   **    

consensus_142#0      GCATGGGCTCTGGGATTGCGTACCATGCACCAGAATCCCATCTCCATTCTGTTGTAAGTC 420
consensus_142#1      -TATTTCTCCCTACGTTG---GTCCTGCAC-AGAATGC-ATTTACA----GTCATGGATC 379
                       **     *     ***     * ***** ***** * ** * **    **  *   **

consensus_142#0      CATTGCCAGCATCAGGTCTCCAACTTGGGATCGCGAGCTTGGAACAATAGCTGGGGCTTT 480
consensus_142#1      CCATGTCAATTTCTCATGGACCATGCGCATTGGAGTACTCCTCTCGTAGTCTCATCAGAA 439
                     *  ** **   **   *   * *   *   * * *  **     *     **        

consensus_142#0      TGATTCTTCTTCGAAGCTTTTGGGCATGCAGCCCC-GTAAGGNTACATACAGTGTAACCG 539
consensus_142#1      TGGTCCTGCTCAGTGTCATGGGGAAGGATAACCGAAGTGATGGTTGAATGTCTTCACTCG 499
                     ** * ** **  *   * *  **      * **   ** * * *  *     *  *  **

consensus_142#0      TATGTGTTTCTATGATGACTTTAACTTCTGAGGTTTTGCTTAGTGAGAAATAGATCCTAC 599
consensus_142#1      TGCAAATACCTATGAGGCCA--AGCATCGGTGGTGTCTGGTCATCTGGTGTGG----TAC 553
                     *     *  ****** * *   * * ** * *** *    *  *  *   * *    ***

consensus_142#0      TTAGAATCCGATCAGGCCGTATACCTTCTCTAGCTGGGGAGATTAATCTGGTAGTTTATG 659
consensus_142#1      T-GTGGTGTGAATTGTTTGCACTGCATCTC-AATTTTGAATTGTGATACGGTAGTC-GCG 610
                     *     *  **   *   * *   * **** *  *  * *   * **  ******    *

consensus_142#0      TTTCGCTTTTCTGCATNCTTCAAGTT-CAGTAGCAACAGTTTGACTGAAACTGGANCTGT 718
consensus_142#1      T---ACCCATTGGGATGGTTGTAGTTGTACTCATCATGGTAATATGGGAGGATTGGTGGT 667
                     *    *   *  * **  **  ****  * *    *  **   *  * *         **

consensus_142#0      CACAAGGTGGCNAAAATGTGGNACACCCCAAAATC 753
consensus_142#1      C-CAAAAAAAAAAAAAAAAAAAAAA---------- 691
                     * ***       ****      * *