These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_14202#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 10 consensus length = 771 fasta sequence [CTAGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC-GCCAACGCCGCCCGGAAGGACCTCCCCCAGA-TCGTCTGCCCCAACT-GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT-ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT-GTGT-ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT-ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAATGGAACAATATTAACATGTTCTTACTCCTCAAACCTAAAAAGA] [+] EMBL AK099779 [CTAGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTC ] [+] EMBL CA754499 [ AGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACTGGCACGGGCCTCGGCAAGGTCCGGCAGATCGACAAGGAATCATCCATCTCT ACCTACCTGGTTCATCGACGATGCATCCGTCCGTCCATCATCATCCAGGTGCCAGCTTCTGATCATCTGAT ACTATATACTTGT GTGT ATCTCACCATCTGGGTGCGGCGTCGATATGACTATATCCCTATCATCCGGAGTTTGCAACGGTGGAATAA TCCGTATATCTGCGGTAAT ] [+] EMBL CB667299 [ CACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCACCGCTCTGCAC TCCAcc ] [+] EMBL BE230076 [ GCTTCTCCTGCTTCCACTGCCGCCGCCGTCGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAGTTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGTGGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCACGGAAGGACACGTGCCCGG ] [+] EMBL AK121142 [ GAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAATG ] [+] EMBL CB645094 [ GAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCTGGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGGCGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGC GCCAACGCCGCCCGGAAGGACCTCCCCCAGA TCGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCT ] [+] EMBL BI811399 [ GTTCGTGCGCAA GGCGGCCCCAC TTGCGCTGCCAACGCCGCCCGGAAGGACCTCCCCCCGAGTCGTTTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCTGACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGTGGTGTGATCTCACCATCTGT ] [-] EMBL CB667300 [ CGTCTGCCCCAACT GCAACGGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATGGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAAGGGAACAATATTAACATGTTCTTACTCCTCAAACCTAAAAAGA] [+] EMBL AU032863 [ GGCCTCGGCAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCTGTGTGCGTCGTCTATATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTaa ] [+] EMBL BQ907750 [ CAAGCTCGGCCAGATCGACAAGTAATCATCCATCTCT ACCTACCTGCTTCATCGACGATCCATCCATCCATCCATCATCATCCAGCTGCCAGCTTCTGATCATCTGATCACTATATACATGT GTGT ATCTCACCATCT GTCTACATAACTATAT ACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGG CAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTAATGGAAAAAaaaaa ] consensusID : consensus_14202#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 464 fasta sequence [ACACTTTCCCGGTTTTCGTCGGCCCCGGGTTCGTGCCCAGGTCGGCTCCACTCTGCGCTCCTTCTCCGCCCGGAAGGACCTCCCCCAGTTCGGTTTGCCCCAACTGCAACGGCCCTCGGCAAGCTCGGCCAGAGCGACAAGTATTCATCCATCTTACCCTACCTGCTTCATCGACGATCCATCCAGTCCATCCATCATCAGTCCAGCTGCCAGCTTCTGAGTCACAAAAAACAGGGGTGTATCTTCCCCATCTGTCTACATAACTATATACTATAAGTCGTTAGTTTGGAACG-CTGGAATAATTCC-ATATATA-TGGTCTAA-TTCCAGTGTTCCA-AGCCGG-CAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTC-TGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTTTAATGGAACAAATATTAACATGTTCTTACTAAAAA] [-] EMBL BU672918 [ACACTTTCCCGGTTTTCGTCGGCCCCGGGTTCGTGCCCAGGTCGGCTCCACTCTGCGCTCCTTCTCCGCCCGGAAGGACCTCCCCCAGTTCGGTTTGCCCCAACTGCAACGGCCCTCGGCAAGCTCGGCCAGAGCGACAAGTATTCATCCATCTTACCCTACCTGCTTCATCGACGATCCATCCAGTCCATCCATCATCAGTCCAGCTGCCAGCTTCTGAGTCACAAAAAACAGGGGTGTATCTTCCCCATCTGTCTACATAACTATATACTATAAGTCGTTAGTTTGGAACG CTGGAATAATTCC ATATATA TGGTCTAA TTCCAGTGTTCCA AGCCGG CAATCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTC TGATAAACATATTCATTGTCTCTCGCTGCTCTTCCGTTT ] [-] EMBL CB965547 [ GTTTGGAACGCCTGGAATAATTCCNATATATAGTGGTCTAANTTCCAGTGTTCCACAGCCGGCCATTCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCGTGATATACATATTCATTGTCTCTCGCTGCTCTTCCGTTT ] [+] EMBL BI803182 [ TTCC ATATATA TGGTCTAA TTCCAGTGTTCCA AGCCGC CAATCGCTACTTAAATTCAATGTACTTGT TT CTGA CTACTTTGTCTC TGATATACATATTCATTGTCTCTC CTGCTCTTCCCTCTTAATGGAACAAATATTAACATGTTCTTACTAAAAA] consensusID : consensus_14202#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 405 fasta sequence [GGGACCTCTGCGCTGCCTCNAGATGCTGTGTCTGGCCCNCCCTATGATCCTGTGCCAATACGGGNGCCTCTGGCNGGCAAGCTGCGGCCTAGATCCGGACCAAGGGAATGCATGCCATGCTGCGTGACCTGACCCTGGGCTGTGCATGCGGACCGGATGCCAGTGCCNATGCCGATGCCAATGCATGCATNCCAAGCTGGGCCAAGCTTCTGATCATCTGGATGCACTATATACATGTGTGTATCTGCACCATCTGTGCTACATGAACTGATATGACTATGAATGCGTTACGTTTGGAACGCTGGAATAATTCCATATATATGGGTCTGAATTCCCAGTGTTCCAAGCCGGCAATCGCTACTTAAATTCAAGGTACTTGTGTTGCTGAGCTACTTGTCTCTGATA] [+] EMBL BQ907459 [GGGACCTCTGCGCTGCCTCNAGATGCTGTGTCTGGCCCNCCCTATGATCCTGTGCCAATACGGGNGCCTCTGGCNGGCAAGCTGCGGCCTAGATCCGGACCAAGGGAATGCATGCCATGCTGCGTGACCTGACCCTGGGCTGTGCATGCGGACCGGATGCCAGTGCCNATGCCGATGCCAATGCATGCATNCCAAGCTGGGCCAAGCTTCTGATCATCTGGATGCACTATATACATGTGTGTATCTGCACCATCTGTGCTACATGAACTGATATGACTATGAATGCGTTACGTTTGGAACGCTGGAATAATTCCATATATATGGGTCTGAATTCCCAGTGTTCCAAGCCGGCAATCGCTACTTAAATTCAAGGTACTTGTGTTGCTGAGCTACTTGTCTCTGATA] consensusID : consensus_14202#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 208 fasta sequence [TATACATGTGTGTATCTCACCATCTGTGTGCGTCGTCTATATAACTATATACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG] [+] EMBL CF333130 [TATACATGTGTGTATCTCACCATCTGTGTGCGTCGTCTATATAACTATATACTATAATCGTTAGTTTGGAACGCTGGAATAATTCCATATATATGGTCTAATTCCAGTGTTCCAAGCCGGCTATATATCAATCGCTACTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGTCATGCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_14202#2 ------------------------------------------------------------ consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 CTAGCTAGCTCGTCGTTAGCCACCCATGGCTGCTTCTCCTGCTTCCACTGCCGCCGCCGT 60 consensus_14202#1 ------------------------------------------------------------ consensus_14202#2 ------------------------------------------------------------ consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 CGTGAATGCGCCGGCGGCCACCGGCGGGCTGCTGCTGCCGCGGGGGAGGAGTAGTTGGAG 120 consensus_14202#1 ------------------------------------------------------------ consensus_14202#2 ------------------------------------------------------------ consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 TTGGAGTTGCTGCAACAATAACAATTCTTCGATGGGGAGGAGGTGGCGGGCGGCGGCGGT 180 consensus_14202#1 ------------------------------------------------------------ consensus_14202#2 ------------------------------------------------------------ consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 GGGGGAGGTGGCGGCGGAGGGGAACACGTACCTGATCGCGGGGGCGGTGGCGGTGGCGCT 240 consensus_14202#1 ------------------------------------------------------------ consensus_14202#2 --------------------------------------------------GGGACCTCTG 10 consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 GGTGGGGACGGCGTTCCCGATACTGTTCTCGCGGAAGGACACGTGCCCGGAGTGCGACGG 300 consensus_14202#1 --------------------------------------ACACTTTCCCGGTTTTCGTCGG 22 consensus_14202#2 CGCTGCCTCNAGATGCTGTGTCTGGCCCNCCCTATGATCCTGTGCCAATACGGGNGCCTC 70 consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 CGCCGGGTTCGTGCGCAAGGGCGGCGCCACGCTGCGCGCCAACGCCGCCCGGAAGGACCT 360 consensus_14202#1 CCCCGGGTTCGTGC-CCAGGTCGGCTCCACTCTGCGCTCCTTCTCCGCCCGGAAGGACCT 81 consensus_14202#2 TGGCNGGCAAGCTGCGGCCTAGATCCGGACCAAGGGAATGCATGCCATGCTGCGTGACCT 130 consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 CCCCCAGATCG-TCTGCCCCAA--CTGCAACGGCC-TCGGCAAGCTCGGCCAGATCGACA 416 consensus_14202#1 CCCCCAGTTCGGTTTGCCCCAA--CTGCAACGGCCCTCGGCAAGCTCGGCCAGAGCGACA 139 consensus_14202#2 GACCCTGGGCTGTGCATGCGGACCGGATGCCAGTGCCNATGCCGATGCCAATGCATGCAT 190 consensus_14202#3 ------------------------------------------------------------ consensus_14202#0 AGTAATCATCCATCTCTACCTACCTGCTTC----ATCGACGATCCATCCA-TCCATCCAT 471 consensus_14202#1 AGTATTCATCCATCTTACCCTACCTGCTTC----ATCGACGATCCATCCAGTCCATCCAT 195 consensus_14202#2 NCCAAGCTGGGC--CAAGCTTCTGATCATCTGGATGCACTATATACATGTGTGTATCTGC 248 consensus_14202#3 -----------------------------------------TATACATGTGTGTATCT-C 18 consensus_14202#0 CATCA-TCCAGCTGCCAGCTTCTGATCATCTGAT--CACTATATACATGTGTGTATCT-C 527 consensus_14202#1 CATCAGTCCAGCTGCCAGCTTCTGA-------GT--CACAAAAAACAGGGGTGTATCTTC 246 * *** * ******** * consensus_14202#2 ACCATCTGTGCTACATGAACTGATATGACTATGAATG------CGTTACGTTTGGAACGC 302 consensus_14202#3 ACCATCTGTG-TGCGTCGTCT-ATATAACTATATACTATAA-TCGTTA-GTTTGGAACGC 74 consensus_14202#0 ACCATCTGTG-TGCGTCGTCT-ATATAACTATATACTATAA-TCGTTA-GTTTGGAACGC 583 consensus_14202#1 CCCATCTGT----------CT-ACATAACTATATACTATAAGTCGTTA-GTTTGGAACGC 294 ******** ** * ** ***** * ***** *********** consensus_14202#2 TGGAATAATTCCATATATATGGGTCTGAATTCCCAGTGTTCCAAGCCGGC--------AA 354 consensus_14202#3 TGGAATAATTCCATATATATGG-TCTAA--TTCCAGTGTTCCAAGCCGGCTATATATCAA 131 consensus_14202#0 TGGAATAATTCCATATATATGG-TCTAA--TTCCAGTGTTCCAAGCCGGCTATATATCAA 640 consensus_14202#1 TGGAATAATTCCATATATATGG-TCTAA--TTCCAGTGTTCCAAGCCGGC--------AA 343 ********************** *** * * ****************** ** consensus_14202#2 TCGCTACTTAAATTCAAGGTACTTGTGTTGCTGAGCTACTT-GTCTCTGATA-------- 405 consensus_14202#3 TCGCTACTTAAATTCAAAAAAAAAAAAAAAAAAAAAAAAAA-AAAAAAAAAAAAAAAAAA 190 consensus_14202#0 TCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATT 700 consensus_14202#1 TCGCTACTTAAATTCAATGTACTTGTGTTGCTGAGCTACTTTGTCTCTGATATACATATT 403 ***************** * * * * * consensus_14202#2 ------------------------------------------------------------ consensus_14202#3 AAAAACCCTGTCATGCCG------------------------------------------ 208 consensus_14202#0 CATTGTCTCTCGCTGCTCTTCCGTTT-AATGGAACAA-TATTAACATGTTCTTACTCCTC 758 consensus_14202#1 CATTGTCTCTCGCTGCTCTTCCGTTTTAATGGAACAAATATTAACATGTTCTTACTAAAA 463 consensus_14202#2 ------------- consensus_14202#3 ------------- consensus_14202#0 AAACCTAAAAAGA 771 consensus_14202#1 A------------ 464 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||