Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 14206 cluster # 14206       Sequences # 15       consensus # 4


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_14206#0 length = 993 sequences # 12  
consensus_14206#1 length = 547 sequences # 1  
consensus_14206#2 length = 424 sequences # 1  
consensus_14206#3 length = 289 sequences # 1  

consensusID : consensus_14206#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 12
consensus length = 993
fasta sequence
                              [CTGAAGGAGTAAGAAAGGTTCGCCTTCGGCTTCGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT-TTTAGTGGAAA-GA-CCAT-CACAGTA-TGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA-CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA-AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA-GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA-AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGTAGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTATAGTTCTGTTTAAAAAATTGACAGTTCAAAAAAAAAAAAAAAA]

[+] EMBL CF281872             [CTGAAGGAGTAAGAAAGGTTCGCCTTCGGCTTCGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGGGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GA CCAT CACAGTA TGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGC                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CF320081             [                        TTCGGCTTCGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GA CCAT CACAGTA TGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACG                                                                                                                                                                                                                                                                                   ]
[+] EMBL CF317284             [                        TTCGGCTTCGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GA CCAT CACAGTA TGCTCGTAGGGTAGAGGATATTTCACTCATTNTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTCTGATTCACATGCTTGAGAACCA                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF281292             [                                                   GTCTCCGTCTCCGCCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTATTTTTTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGATTTTTCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GA CCAT CACAGTA TGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGC                                                                                                                                                                                                                                                                                                                                                                                                           ]
[+] EMBL CA756523             [                                                                                                                                                                                                                                                                      ATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GA CCAT CACAGTA TGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTTAACATTGAACCTATCCTGGACTTGACG                                                                                                     ]
[-] EMBL CF317283             [                                                                                                                                                                                                                                                                                                                                                    TCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GACCCAT CACAGTANTGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTTTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGTAGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTAaaaaa                                      ]
[-] EMBL CF281291             [                                                                                                                                                                                                                                                                                                                                                                                                                  TCCATATTTTGGAGCTAGCAGATAT TTTAGTGGAAA GA CCATCCACAGTA TGCTCGTAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTTTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGTAGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTATAGTTCTGTTTAAAAAA                          ]
[+] EMBL BI805760             [                                                                                                                                                                                                                                                                                                                                                                                                                                   aCAGATATGTTTAGTGGAAAGGA CCAT CACAGTA TGCTCGTA GGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCANCTCTGATTCACATGCTTGAGAACCCAATTCAGCGTCGGAAACACAGCCATTGAAGATATAAAGCAGAGGAGAGAGGAGGCNCCAAAGCTACTTGGGGAATCCCTGCTAATCTTAGATGGAAACCACGCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCANAGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCNTGGGAGATACTTCTGGCTTTTGTCNNAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACCTTGAACCTATCCTGGACTTGACGGTAGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATAATGTTTAGAACCTATAGTTCTG                                   ]
[-] EMBL CF320082             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TAGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTTTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGTAGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTATAGTTCTGTTTAATTGCTTGACAGTTCAAAAAAA         ]
[-] EMBL CF281179             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                               AGGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCA CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGGAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGTAGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTATAGTTCTGTTTAATTGCTTGACAGTTCCATTATTAAAAAAAAA]
[+] EMBL CA999467             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     CCAGAGCCA CTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACA AGCAATTGAAGATATAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACCA GCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGTGCCA AGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATT                                                                                                                          ]
[-] EMBL CF292304             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       GAGGAGGCGCAAAAGCTACTTGGGGAATCACTGTTAATCTTAGATGGAAACCA CCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATATGCTTCCCCGCTTCCCAACGTGCCA AGTTGGGTAGATAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAGTAGTGTGACCGTGGGAGATACTTTTGGCTTTTGTGCAAACTCCCTATTTATAGCCCGTTTGTGTGTTGTGATTTGTGAAACTTTAAACACTGAACCCATATTGGACTTGACGGTAGAAAAGCTTCAATGTTTTCCTGTAATGCACACAGTTTCATGATGTTTAGAACCCATAGTTCTGTTTAAAAAAaaaa                      ]


>consensus_14206#0 CTGAAGGAGTAAGAAAGGTTCGCCTTCGGCTTCGGGTCGGTTCGGTCGCTCGTCTCCGTC TCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCG AGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCAC CTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAAC CTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGG TGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCG ATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAG CAGATATTTTAGTGGAAAGACCATCACAGTATGCTCGTAGGGTAGAGGATATTTCACTCA TTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAGCCACTC TGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACAAGCAATTGAAGATATAAAGC AGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATGGAAACC AGCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCCTAACGT GCCAAGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCTAGTGAG TAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGCCTGTTT GTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGTAGAAAA GCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTATAGTTCTGTT TAAAAAATTGACAGTTCAAAAAAAAAAAAAAAA



consensusID : consensus_14206#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 547
fasta sequence
                              [CGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGTCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGGTTGGCATCCCCATATGTGCTTCATCCAAACACCTGTTCATGTTTTTCCCATTTTTTCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCTTCATCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAATCTTATAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATATTTTAGTGGAAAGACCATCACAGTATGCTCGTAAGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTC]

[+] EMBL CF281180             [CGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGTCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGGTTGGCATCCCCATATGTGCTTCATCCAAACACCTGTTCATGTTTTTCCCATTTTTTCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCTTCATCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAATCTTATAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATATTTTAGTGGAAAGACCATCACAGTATGCTCGTAAGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTC]


>consensus_14206#1 CGGGTCGGTTCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGTCACCGCCGCCGCCGC TCGCCGGAGGCTCTCGCGCCCTTCCTCGAGGTTGGCATCCCCATATGTGCTTCATCCAAA CACCTGTTCATGTTTTTCCCATTTTTTCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATG GCCACATCTTCATCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAA AAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTC GGTGCTACCTACACAACAGATGTGGTGCTCCCAATCTTATAGGATCAAGGTGTTCGTCAG CTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAG CTTCAGCTCCATATTTTGGAGCTAGCAGATATTTTAGTGGAAAGACCATCACAGTATGCT CGTAAGGTAGAGGATATTTCACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTA CGACCTC



consensusID : consensus_14206#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 424
fasta sequence
                              [TCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGATTCTGTGATGTGACAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATATTTTAGTGGAAAGACCATCACA]

[+] EMBL CF292305             [TCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCGAGATTCTGTGATGTGACAGCTTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACAAGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATATTTTAGTGGAAAGACCATCACA]


>consensus_14206#2 TCGGTCGCTCGTCTCCGTCTCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAG GCTCTCGCGCCCTTCCTCGAGATTCTGTGATGTGACAGCTTGGAAGTTGAGTTGGTTCCG TACCTGGCATGGCCACATCATCAGCATATCCTCCACCTCCTCCATATTACCGACTATACA AGGATTACGAAAAGGATCCTTCATCTGCACCTGAACCTCCACCGCCAGTTGATGGACCAT ATCAACTCTTCGGTGCTACCTACACAACAGATGTGGTGCTCCCAAGCTTAGAGGATCAAG GTGTTCGTCAGCTTTATCCGAAGAGCCCAGATATCGATTTCAAAAAGGAGCTAAGGACCC TGAACAGAGAGCTTCAGCTCCATATTTTGGAGCTAGCAGATATTTTAGTGGAAAGACCAT CACA



consensusID : consensus_14206#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 289
fasta sequence
                              [GTGCCAAGTTGGGCTGAGCTGAGGAGAGTGGCAGCTTGGGCAAGTTGCACCTGTAGAAATAGTCTGAGTGGAGTAGTGTGACCGTGGGAGATACTTCTGGGCTGTTTGTGCAAAACTGCACTGTATGTTATTGCACTGTTTGTGTGTTGTGATGTTGGTGAAACTTTAAACATTGAACACTATCCTGGACTTGACGGTAGAAGCTTCAATGTTCTCCTGTAATGCATACAAGTTTCATAATGTTTAGAACACTATAGTTCTGTTTAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL BI802727             [GTGCCAAGTTGGGCTGAGCTGAGGAGAGTGGCAGCTTGGGCAAGTTGCACCTGTAGAAATAGTCTGAGTGGAGTAGTGTGACCGTGGGAGATACTTCTGGGCTGTTTGTGCAAAACTGCACTGTATGTTATTGCACTGTTTGTGTGTTGTGATGTTGGTGAAACTTTAAACATTGAACACTATCCTGGACTTGACGGTAGAAGCTTCAATGTTCTCCTGTAATGCATACAAGTTTCATAATGTTTAGAACACTATAGTTCTGTTTAAAAAAAAAAAAAAAAAAAAAAAA]


>consensus_14206#3 GTGCCAAGTTGGGCTGAGCTGAGGAGAGTGGCAGCTTGGGCAAGTTGCACCTGTAGAAAT AGTCTGAGTGGAGTAGTGTGACCGTGGGAGATACTTCTGGGCTGTTTGTGCAAAACTGCA CTGTATGTTATTGCACTGTTTGTGTGTTGTGATGTTGGTGAAACTTTAAACATTGAACAC TATCCTGGACTTGACGGTAGAAGCTTCAATGTTCTCCTGTAATGCATACAAGTTTCATAA TGTTTAGAACACTATAGTTCTGTTTAAAAAAAAAAAAAAAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_14206#1      --------------------------------CGGGTCGGTTCGGTCGCTCGTCTCCGTC 28
consensus_14206#2      -----------------------------------------TCGGTCGCTCGTCTCCGTC 19
consensus_14206#0      CTGAAGGAGTAAGAAAGGTTCGCCTTCGGCTTCGGGTCGGTTCGGTCGCTCGTCTCCGTC 60
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      TCCGTCTCCGCCACCGTCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCG 88
consensus_14206#2      TCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCG 79
consensus_14206#0      TCCGTCTCCGCCACCGCCACCGCCGCCGCCGCTCGCCGGAGGCTCTCGCGCCCTTCCTCG 120
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      AGGTTGGCATCCCCATATGTGCTTCATCCAAACACCTGTTCATGTTTTTCCCATTTTTTC 148
consensus_14206#2      AGATT------CTGTGATGTG----------ACAGCT----------------------- 100
consensus_14206#0      AGCTT------------------------------------------------------- 125
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      TTGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCTTCATCATATCCTCCACCTC 208
consensus_14206#2      -TGGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTC 159
consensus_14206#0      --GGAAGTTGAGTTGGTTCCGTACCTGGCATGGCCACATCATCAGCATATCCTCCACCTC 183
consensus_14206#3      ----GTGCCAAGTTGGG-CTGAGCTGAGGAGAGTGGCAGCTTGGGCAAGT--TGCACCTG 53
                             *   ******  * *  *   * *  *   ** * *   **  *  * ***** 

consensus_14206#1      CTCCATATTACCGACTATACAAG---GATTACGAAAAGGATCCTTCATCTGCACCTG--A 263
consensus_14206#2      CTCCATATTACCGACTATACAAG---GATTACGAAAAGGATCCTTCATCTGCACCTG--A 214
consensus_14206#0      CTCCATATTACCGACTATACAAG---GATTACGAAAAGGATCCTTCATCTGCACCTG--A 238
consensus_14206#3      TAGAAATAGTCTGAGTGGAGTAGTGTGACCGTGGGAGATACTTCTGGGCTGTTTGTGCAA 113
                           *     * ** *  *  **   **    *  *   *    *   ***    **  *

consensus_14206#1      ACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGT 323
consensus_14206#2      ACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGT 274
consensus_14206#0      ACCTCCACCGCCAGTTGATGGACCATATCAACTCTTCGGTGCTACCTACACAACAGATGT 298
consensus_14206#3      AACTGCACTGTATGTTATTGCACTGTTTGTGTGTTGTGATGTTGGTGAAACTTTAAACAT 173
                       * ** *** *   ***  ** **  * *      *  * ** *    * **   * *  *

consensus_14206#1      GGTGC----TCCCAATCTTATAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAG 379
consensus_14206#2      GGTGC----TCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAG 330
consensus_14206#0      GGTGC----TCCCAAGCTTAGAGGATCAAGGTGTTCGTCAGCTTTATCCGAAGAGCCCAG 354
consensus_14206#3      TGAACACTATCCTGGACTTGACGGTAGAAGCT-----TCAATGTTCTCCTGTAA---TGC 225
                        *  *    ***    ***   **   *** *     ***   ** ***    *      

consensus_14206#1      ATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGG 439
consensus_14206#2      ATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGG 390
consensus_14206#0      ATATCGATTTCAAAAAGGAGCTAAGGACCCTGAACAGAGAGCTTCAGCTCCATATTTTGG 414
consensus_14206#3      ATACAAGTTTCATAAT---GTTTAGAACACT--ATAG-----TTCTGTTTAAAAAAAAAA 275
                       ***    ***** **    * * ** ** **  * **     *** * *  * *      

consensus_14206#1      AGCTAGCAGATATTTTAGTGGAAAGACCATCACAGTATGCTCGTAAGGTAGAGGATATTT 499
consensus_14206#2      AGCTAGCAGATATTTTAGTGGAAAGACCATCACA-------------------------- 424
consensus_14206#0      AGCTAGCAGATATTTTAGTGGAAAGACCATCACAGTATGCTCGTAGGGTAGAGGATATTT 474
consensus_14206#3      AAAAAAAAAAAAAA---------------------------------------------- 289
                       *   *  * * *                                                

consensus_14206#1      CACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTC------------ 547
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      CACTCATTTTCAAGAACTTGCACCACCTTCTTAATTCCTTACGACCTCACCAAGCCAGAG 534
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      CCACTCTGATTCACATGCTTGAGAACCAAATTCAGCGTCGGAAACAAGCAATTGAAGATA 594
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      TAAAGCAGAGGAGAGAGGAGGCACAAAAGCTACTTGGGGAATCACTGCTAATCTTAGATG 654
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      GAAACCAGCCGAGTTTGCCTGCAATGTGAAGACATGTGATGTATCTGCTTCCCTGCTTCC 714
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      TAACGTGCCAAGTTGGCTAGCTAGAGAGTGCACTTGGCAGTTCACCTGTAGAAATAGTCT 774
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      AGTGAGTAGTGTGACCGTGGGAGATACTTCTGGCTTTTGTGCAAACTCCTTATTTATTGC 834
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      CTGTTTGTGTGTTGTGATTTGTGAAACTTTAAACATTGAACCTATCCTGGACTTGACGGT 894
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ------------------------------------------------------------
consensus_14206#2      ------------------------------------------------------------
consensus_14206#0      AGAAAAGCTTCAATGTTCTCCTGTAATGCATACAGTTTCATGATGTTTAGAACCTATAGT 954
consensus_14206#3      ------------------------------------------------------------
                                                                                   

consensus_14206#1      ---------------------------------------
consensus_14206#2      ---------------------------------------
consensus_14206#0      TCTGTTTAAAAAATTGACAGTTCAAAAAAAAAAAAAAAA 993
consensus_14206#3      ---------------------------------------
                                                              




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)